Wall clock time and date at job start Tue Mar 31 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76195 * 103.00132 * 2 1 4 4 C 1.38878 * 120.15387 * 0.21222 * 3 2 1 5 5 C 1.38051 * 120.08887 * 180.25053 * 4 3 2 6 6 C 1.38809 * 120.39687 * 359.79231 * 5 4 3 7 7 F 1.35096 * 119.85057 * 180.02562 * 6 5 4 8 8 C 1.38000 * 120.29988 * 359.97438 * 6 5 4 9 9 C 1.39686 * 119.90310 * 0.02562 * 8 6 5 10 10 C 1.47613 * 120.19374 * 179.97438 * 9 8 6 11 11 C 1.39331 * 120.35155 * 65.01769 * 10 9 8 12 12 C 1.37962 * 119.97188 * 179.97438 * 11 10 9 13 13 C 1.39001 * 120.69814 * 359.74549 * 12 11 10 14 14 C 1.36379 * 120.71077 * 0.51964 * 13 12 11 15 15 C 1.40766 * 119.99884 * 359.48513 * 14 13 12 16 16 C 1.40809 * 120.34048 * 180.23640 * 15 14 13 17 17 H 1.07998 * 120.00008 * 150.98123 * 16 15 14 18 18 C 1.40017 * 119.99813 * 330.97725 * 16 15 14 19 19 N 1.30811 * 119.99657 * 161.03448 * 18 16 15 20 20 Si 1.86804 * 120.00132 * 341.03325 * 18 16 15 21 21 H 1.48503 * 109.46775 * 95.44215 * 20 18 16 22 22 H 1.48492 * 109.47004 * 215.44152 * 20 18 16 23 23 H 1.48500 * 109.46808 * 335.44417 * 20 18 16 24 24 H 1.09002 * 109.47125 * 300.00252 * 1 2 3 25 25 H 1.09000 * 109.46889 * 59.99748 * 1 2 3 26 26 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.95437 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.80036 * 179.76503 * 5 4 3 29 29 H 1.07999 * 120.04948 * 180.02562 * 8 6 5 30 30 H 1.08004 * 120.01383 * 0.02562 * 11 10 9 31 31 H 1.08008 * 119.65039 * 180.02562 * 12 11 10 32 32 H 1.07993 * 119.64395 * 180.27662 * 13 12 11 33 33 H 1.08007 * 119.99780 * 179.76745 * 14 13 12 34 34 H 0.97004 * 119.99650 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1973 2.6667 0.0044 5 6 1.5094 4.0114 -0.0008 6 6 2.8344 4.4249 -0.0062 7 9 3.1273 5.7438 -0.0107 8 6 3.8540 3.4950 -0.0058 9 6 3.5525 2.1310 -0.0005 10 6 4.6380 1.1307 -0.0007 11 6 5.5032 1.0305 1.0868 12 6 6.5148 0.0925 1.0786 13 6 6.6805 -0.7630 -0.0043 14 6 5.8532 -0.6859 -1.0858 15 6 4.8112 0.2603 -1.1088 16 6 3.9498 0.3428 -2.2195 17 1 2.9325 0.6816 -2.0900 18 6 4.4120 -0.0144 -3.4920 19 7 3.5587 -0.2980 -4.4420 20 14 6.2473 -0.0859 -3.8330 21 1 6.7278 -1.4810 -3.6657 22 1 6.5103 0.3649 -5.2232 23 1 6.9625 0.8016 -2.8811 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.1639 2.3529 0.0075 28 1 0.7178 4.7461 -0.0011 29 1 4.8835 3.8212 -0.0096 30 1 5.3815 1.6864 1.9362 31 1 7.1823 0.0190 1.9246 32 1 7.4753 -1.4940 0.0092 33 1 5.9947 -1.3539 -1.9226 34 1 3.8789 -0.5451 -5.3237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205974968.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:02 Heat of formation + Delta-G solvation = -16.146410 kcal Electronic energy + Delta-G solvation = -20080.422806 eV Core-core repulsion = 16982.763545 eV Total energy + Delta-G solvation = -3097.659261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83371 -40.36420 -38.80149 -35.48683 -33.53054 -32.29269 -31.73664 -29.89912 -29.52064 -26.98939 -24.31732 -23.75242 -22.89066 -21.54530 -19.29933 -18.63976 -18.24065 -17.32757 -17.25780 -16.55307 -16.21025 -15.82843 -15.69797 -15.48509 -15.18782 -14.57920 -14.49755 -14.37044 -14.15042 -13.72802 -13.65182 -13.31937 -13.22014 -12.88328 -12.66008 -12.57865 -12.16844 -12.05869 -11.62271 -11.36723 -11.03275 -10.85658 -10.26960 -9.99628 -9.43032 -9.23547 -8.84428 -8.01697 -6.34099 0.08657 0.22778 0.75138 0.83376 0.96277 1.27669 1.41209 1.49242 1.75754 2.13697 2.56021 2.68982 3.30664 3.56357 3.83394 3.96818 4.18832 4.31799 4.33227 4.35945 4.41205 4.43197 4.73112 4.79797 4.85612 4.90080 5.01856 5.08567 5.16442 5.19593 5.36824 5.45105 5.65298 5.84901 5.93238 6.03825 6.10648 6.34484 6.52822 6.84955 6.93302 8.20845 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.007473 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.994316 B = 3745.722524 C = 3998.757742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.117 6.117 3 C -0.098 4.098 4 C -0.109 4.109 5 C -0.142 4.142 6 C 0.078 3.922 7 F -0.145 7.145 8 C -0.147 4.147 9 C 0.035 3.965 10 C -0.187 4.187 11 C -0.060 4.060 12 C -0.240 4.240 13 C -0.077 4.077 14 C -0.255 4.255 15 C 0.102 3.898 16 C -0.450 4.450 17 H 0.092 0.908 18 C 0.054 3.946 19 N -0.833 5.833 20 Si 0.949 3.051 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.257 1.257 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.156 0.844 28 H 0.164 0.836 29 H 0.135 0.865 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 3.582 7.552 9.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.129 5.871 3 C -0.212 4.212 4 C -0.133 4.133 5 C -0.162 4.162 6 C 0.056 3.944 7 F -0.124 7.124 8 C -0.168 4.168 9 C 0.029 3.971 10 C -0.189 4.189 11 C -0.078 4.078 12 C -0.259 4.259 13 C -0.095 4.095 14 C -0.274 4.274 15 C 0.099 3.901 16 C -0.479 4.479 17 H 0.109 0.891 18 C -0.163 4.163 19 N -0.459 5.459 20 Si 0.774 3.226 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.181 1.181 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.136 0.864 27 H 0.174 0.826 28 H 0.181 0.819 29 H 0.152 0.848 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.428 2.457 7.281 8.415 hybrid contribution -0.005 1.097 -0.708 1.305 sum -3.433 3.553 6.574 8.223 Atomic orbital electron populations 1.23830 0.94212 1.07982 1.06046 1.86486 1.06850 1.02896 1.90904 1.22226 0.95999 0.97515 1.05436 1.21200 0.99060 0.91778 1.01244 1.21189 0.94718 0.96818 1.03458 1.17609 0.94192 0.77153 1.05420 1.91447 1.94386 1.32253 1.94309 1.21235 0.99516 0.91695 1.04310 1.18216 0.91210 0.91964 0.95695 1.18656 1.00699 1.00729 0.98789 1.20958 0.93656 0.97259 0.95966 1.20681 1.02934 1.01839 1.00463 1.20759 0.97465 0.97870 0.93408 1.20872 1.02673 1.03402 1.00430 1.17700 0.90768 0.89124 0.92539 1.19736 1.00131 1.37029 0.90986 0.89057 1.26730 1.02922 0.90552 0.96046 1.69720 1.38642 1.32872 1.04646 0.85752 0.79834 0.80010 0.77033 1.18733 1.21004 1.18127 0.88224 0.89729 0.86375 0.82610 0.81853 0.84754 0.86487 0.85536 0.86105 0.88791 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.15 113.37 1.04 -2.81 16 2 S -0.12 -4.46 18.84 -56.49 -1.06 -5.52 16 3 C -0.10 -3.77 5.11 22.96 0.12 -3.65 16 4 C -0.11 -3.36 9.36 22.38 0.21 -3.15 16 5 C -0.14 -4.12 10.01 22.36 0.22 -3.90 16 6 C 0.08 2.62 7.29 22.35 0.16 2.78 16 7 F -0.15 -4.65 17.26 44.97 0.78 -3.87 16 8 C -0.15 -5.55 9.72 22.56 0.22 -5.33 16 9 C 0.04 1.46 4.70 -19.91 -0.09 1.37 16 10 C -0.19 -8.41 4.65 -19.61 -0.09 -8.51 16 11 C -0.06 -2.43 9.73 22.47 0.22 -2.21 16 12 C -0.24 -9.23 10.03 22.39 0.22 -9.01 16 13 C -0.08 -3.15 9.96 22.02 0.22 -2.93 16 14 C -0.25 -12.01 7.13 22.45 0.16 -11.85 16 15 C 0.10 5.05 4.55 -21.11 -0.10 4.96 16 16 C -0.45 -23.88 8.09 23.33 0.19 -23.69 16 17 H 0.09 5.07 5.18 -2.91 -0.02 5.06 16 18 C 0.05 2.80 5.40 85.28 0.46 3.26 16 19 N -0.83 -44.30 13.93 21.84 0.30 -44.00 16 20 Si 0.95 42.74 24.52 68.60 1.68 44.43 16 21 H -0.26 -11.26 6.69 99.48 0.67 -10.59 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.26 -11.99 6.88 99.48 0.68 -11.31 16 24 H 0.10 2.00 7.74 -2.39 -0.02 1.99 16 25 H 0.08 2.07 7.76 -2.39 -0.02 2.06 16 26 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.16 3.76 5.88 -2.91 -0.02 3.74 16 28 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 33 H 0.09 4.47 4.68 -2.91 -0.01 4.45 16 34 H 0.29 14.05 8.30 -92.71 -0.77 13.29 16 Total: -1.00 -59.17 298.06 5.93 -53.24 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 1.07 Total: 20.38 kcal Atomic # 6 Polarization: -67.82 SS G_CDS: 3.16 Total: -64.66 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.30 Total: -44.00 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.68 Total: 44.43 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -1.06 Total: -5.52 kcal Total: -59.17 5.93 -53.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205974968.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.098 kcal (2) G-P(sol) polarization free energy of solvation -59.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds