Wall clock time and date at job start Tue Mar 31 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30922 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47258 * 239.99741 * 3 2 1 5 5 H 1.48502 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47203 * 119.99634 * 3 2 1 7 7 C 1.39825 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00112 * 195.53307 * 7 2 1 9 9 C 1.41099 * 119.99869 * 15.52871 * 7 2 1 10 10 C 1.40908 * 120.15281 * 25.96466 * 9 7 2 11 11 C 1.36284 * 119.84235 * 180.02562 * 10 9 7 12 12 C 1.39630 * 120.16032 * 0.02562 * 11 10 9 13 13 N 1.38735 * 119.85042 * 179.97438 * 12 11 10 14 14 C 1.39796 * 120.00103 * 24.23633 * 13 12 11 15 15 C 1.38965 * 120.00357 * 212.52801 * 14 13 12 16 16 C 1.38049 * 120.01372 * 179.71992 * 15 14 13 17 17 C 1.38882 * 120.01708 * 0.23897 * 16 15 14 18 18 N 1.39962 * 119.99490 * 180.02562 * 17 16 15 19 19 C 1.39003 * 120.00529 * 0.02562 * 17 16 15 20 20 Cl 1.73593 * 120.00719 * 179.97438 * 19 17 16 21 21 C 1.38135 * 119.98381 * 0.02562 * 19 17 16 22 22 C 1.39636 * 120.30136 * 0.24782 * 12 11 10 23 23 C 1.36298 * 120.15358 * 359.44762 * 22 12 11 24 24 H 0.97002 * 120.00439 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.07362 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.92311 * 179.97438 * 11 10 9 27 27 H 0.97001 * 119.99939 * 204.23313 * 13 12 11 28 28 H 1.07998 * 119.99456 * 0.02562 * 15 14 13 29 29 H 1.08004 * 119.98771 * 180.25900 * 16 15 14 30 30 H 0.96996 * 120.00103 * 359.97438 * 18 17 16 31 31 H 0.97004 * 119.99444 * 179.97438 * 18 17 16 32 32 H 1.08000 * 120.00841 * 179.97438 * 21 19 17 33 33 H 1.07997 * 119.92088 * 179.70652 * 22 12 11 34 34 H 1.07999 * 120.07738 * 180.24526 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0970 1.6964 -1.2124 5 1 1.2782 2.7464 -0.0006 6 1 3.0969 1.6965 1.2126 7 6 2.0083 -1.2109 0.0005 8 1 3.0588 -1.2279 0.2510 9 6 1.3415 -2.4107 -0.3261 10 6 0.1993 -2.3837 -1.1508 11 6 -0.4403 -3.5463 -1.4618 12 6 0.0334 -4.7622 -0.9649 13 7 -0.6229 -5.9418 -1.2852 14 6 -1.3965 -6.0180 -2.4471 15 6 -2.5298 -6.8217 -2.4759 16 6 -3.2971 -6.8926 -3.6213 17 6 -2.9342 -6.1646 -4.7469 18 7 -3.7128 -6.2364 -5.9077 19 6 -1.7977 -5.3647 -4.7207 20 17 -1.3436 -4.4552 -6.1278 21 6 -1.0292 -5.2944 -3.5750 22 6 1.1614 -4.7957 -0.1425 23 6 1.8143 -3.6412 0.1715 24 1 -0.4851 0.8400 0.0004 25 1 -0.1689 -1.4438 -1.5348 26 1 -1.3161 -3.5271 -2.0935 27 1 -0.5449 -6.7136 -0.7029 28 1 -2.8130 -7.3872 -1.6004 29 1 -4.1801 -7.5142 -3.6418 30 1 -4.5056 -6.7949 -5.9261 31 1 -3.4595 -5.7276 -6.6938 32 1 -0.1459 -4.6734 -3.5544 33 1 1.5197 -5.7391 0.2423 34 1 2.6889 -3.6690 0.8045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212112655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:46 Heat of formation + Delta-G solvation = 40.460600 kcal Electronic energy + Delta-G solvation = -19307.794306 eV Core-core repulsion = 16230.465965 eV Total energy + Delta-G solvation = -3077.328341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.60723 -37.87038 -36.28856 -35.49319 -33.70352 -32.46500 -30.59634 -29.48299 -29.06518 -26.98513 -24.57229 -22.77347 -21.74999 -20.95525 -20.16251 -17.32956 -17.20847 -17.10967 -16.44147 -15.95391 -15.09481 -14.34806 -14.11132 -13.97248 -13.60848 -13.44172 -13.10708 -12.71325 -12.51482 -12.12136 -11.88302 -11.61142 -11.38509 -11.16914 -11.12178 -11.05306 -10.77250 -10.67049 -10.47661 -9.79772 -9.46276 -9.25687 -8.90780 -8.54054 -7.57700 -7.39244 -6.71900 -6.29323 -4.19076 1.46053 1.78384 2.39858 2.83834 3.04569 3.09915 3.12510 3.24750 3.92210 3.97367 4.02265 4.20558 4.67822 5.00293 5.35665 5.60727 5.67919 5.71518 6.04203 6.17493 6.21752 6.27866 6.37661 6.61986 6.76259 6.90227 7.02980 7.10222 7.25711 7.45498 7.54747 7.60100 7.78191 7.80936 8.05532 8.20275 8.38452 8.52889 8.66753 8.93543 9.01955 10.25688 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.004263 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.923797 B = 6565.905997 C = 7445.861769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.092 3.908 10 C -0.135 4.135 11 C -0.133 4.133 12 C 0.040 3.960 13 N -0.679 5.679 14 C 0.167 3.833 15 C -0.133 4.133 16 C -0.154 4.154 17 C 0.175 3.825 18 N -0.882 5.882 19 C -0.075 4.075 20 Cl -0.081 7.081 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.201 4.201 24 H 0.280 0.720 25 H 0.121 0.879 26 H 0.094 0.906 27 H 0.395 0.605 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.395 0.605 31 H 0.396 0.604 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 -10.025 -8.098 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.089 3.911 10 C -0.155 4.155 11 C -0.154 4.154 12 C -0.054 4.054 13 N -0.301 5.301 14 C 0.065 3.935 15 C -0.155 4.155 16 C -0.177 4.177 17 C 0.070 3.930 18 N -0.425 5.425 19 C -0.106 4.106 20 Cl -0.052 7.052 21 C -0.133 4.133 22 C -0.149 4.149 23 C -0.221 4.221 24 H 0.090 0.910 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.229 0.771 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.223 0.777 31 H 0.225 0.775 32 H 0.158 0.842 33 H 0.107 0.893 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.382 -9.630 -8.178 14.154 hybrid contribution 0.143 0.592 -0.082 0.614 sum -6.240 -9.038 -8.259 13.742 Atomic orbital electron populations 1.69837 1.07421 1.29111 1.36245 1.25855 0.94740 1.01136 0.92507 0.86388 0.80096 0.80459 0.79872 1.18915 1.20418 1.19118 1.19431 0.97218 0.91078 1.41446 0.90652 1.17591 0.91965 0.92079 0.89451 1.20976 0.98393 0.96463 0.99646 1.20337 0.99871 0.91747 1.03455 1.17227 0.96625 0.84764 1.06828 1.41461 1.52827 1.13200 1.22656 1.17390 0.91704 0.97753 0.86672 1.20652 0.93680 1.02905 0.98302 1.20186 1.01933 1.03528 0.92081 1.17271 0.91113 0.96185 0.88398 1.42379 1.31075 1.55800 1.13246 1.20083 0.98475 1.02122 0.89970 1.98318 1.92203 1.73817 1.40902 1.20784 1.00326 1.02618 0.89532 1.19948 0.95274 0.97209 1.02475 1.20543 1.02892 0.92770 1.05921 0.90951 0.86116 0.88782 0.77051 0.85890 0.85803 0.77729 0.77482 0.84205 0.89275 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.85 10.90 55.54 0.61 -20.24 16 2 C 0.07 1.87 5.17 -17.35 -0.09 1.78 16 3 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.22 9.04 -37.90 -0.34 -12.56 16 8 H 0.08 1.91 7.89 -52.49 -0.41 1.50 16 9 C 0.09 2.43 5.57 -106.79 -0.59 1.83 16 10 C -0.13 -3.49 8.62 -39.28 -0.34 -3.82 16 11 C -0.13 -3.11 7.79 -39.77 -0.31 -3.42 16 12 C 0.04 0.85 6.09 -83.70 -0.51 0.34 16 13 N -0.68 -11.87 5.43 -8.27 -0.04 -11.92 16 14 C 0.17 2.76 5.88 -83.69 -0.49 2.27 16 15 C -0.13 -1.83 9.96 -39.38 -0.39 -2.22 16 16 C -0.15 -1.93 9.89 -39.41 -0.39 -2.32 16 17 C 0.17 2.34 6.76 -83.62 -0.57 1.77 16 18 N -0.88 -9.00 9.05 32.48 0.29 -8.70 16 19 C -0.07 -1.16 6.33 -39.34 -0.25 -1.41 16 20 Cl -0.08 -1.16 27.58 -51.86 -1.43 -2.59 16 21 C -0.11 -1.90 7.47 -39.36 -0.29 -2.19 16 22 C -0.13 -2.78 9.87 -39.76 -0.39 -3.17 16 23 C -0.20 -4.83 9.74 -39.27 -0.38 -5.21 16 24 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 25 H 0.12 3.26 6.17 -52.49 -0.32 2.93 16 26 H 0.09 2.12 6.23 -52.49 -0.33 1.79 16 27 H 0.40 5.89 8.88 -40.82 -0.36 5.53 16 28 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.40 2.99 8.84 -40.82 -0.36 2.63 16 31 H 0.40 3.88 7.50 -40.82 -0.31 3.57 16 32 H 0.14 2.70 6.60 -52.49 -0.35 2.35 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -27.71 304.67 -9.62 -37.33 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -3.27 Total: 16.04 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -5.34 Total: -28.32 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.85 Total: -40.86 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.43 Total: -2.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.71 -9.62 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212112655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.795 kcal (2) G-P(sol) polarization free energy of solvation -27.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds