Wall clock time and date at job start Tue Mar 31 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30922 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47258 * 239.99741 * 3 2 1 5 5 H 1.48502 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47203 * 119.99634 * 3 2 1 7 7 C 1.39825 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00112 * 195.53307 * 7 2 1 9 9 C 1.41099 * 119.99869 * 15.52871 * 7 2 1 10 10 C 1.40908 * 120.15281 * 25.96466 * 9 7 2 11 11 C 1.36284 * 119.84235 * 180.02562 * 10 9 7 12 12 C 1.39630 * 120.16032 * 0.02562 * 11 10 9 13 13 N 1.38735 * 119.85042 * 179.97438 * 12 11 10 14 14 C 1.39796 * 120.00103 * 24.23633 * 13 12 11 15 15 C 1.38965 * 120.00357 * 212.52801 * 14 13 12 16 16 C 1.38049 * 120.01372 * 179.71992 * 15 14 13 17 17 C 1.38882 * 120.01708 * 0.23897 * 16 15 14 18 18 N 1.39962 * 119.99490 * 180.02562 * 17 16 15 19 19 C 1.39003 * 120.00529 * 0.02562 * 17 16 15 20 20 Cl 1.73593 * 120.00719 * 179.97438 * 19 17 16 21 21 C 1.38135 * 119.98381 * 0.02562 * 19 17 16 22 22 C 1.39636 * 120.30136 * 0.24782 * 12 11 10 23 23 C 1.36298 * 120.15358 * 359.44762 * 22 12 11 24 24 H 0.97002 * 120.00439 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.07362 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.92311 * 179.97438 * 11 10 9 27 27 H 0.97001 * 119.99939 * 204.23313 * 13 12 11 28 28 H 1.07998 * 119.99456 * 0.02562 * 15 14 13 29 29 H 1.08004 * 119.98771 * 180.25900 * 16 15 14 30 30 H 0.96996 * 120.00103 * 359.97438 * 18 17 16 31 31 H 0.97004 * 119.99444 * 179.97438 * 18 17 16 32 32 H 1.08000 * 120.00841 * 179.97438 * 21 19 17 33 33 H 1.07997 * 119.92088 * 179.70652 * 22 12 11 34 34 H 1.07999 * 120.07738 * 180.24526 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0970 1.6964 -1.2124 5 1 1.2782 2.7464 -0.0006 6 1 3.0969 1.6965 1.2126 7 6 2.0083 -1.2109 0.0005 8 1 3.0588 -1.2279 0.2510 9 6 1.3415 -2.4107 -0.3261 10 6 0.1993 -2.3837 -1.1508 11 6 -0.4403 -3.5463 -1.4618 12 6 0.0334 -4.7622 -0.9649 13 7 -0.6229 -5.9418 -1.2852 14 6 -1.3965 -6.0180 -2.4471 15 6 -2.5298 -6.8217 -2.4759 16 6 -3.2971 -6.8926 -3.6213 17 6 -2.9342 -6.1646 -4.7469 18 7 -3.7128 -6.2364 -5.9077 19 6 -1.7977 -5.3647 -4.7207 20 17 -1.3436 -4.4552 -6.1278 21 6 -1.0292 -5.2944 -3.5750 22 6 1.1614 -4.7957 -0.1425 23 6 1.8143 -3.6412 0.1715 24 1 -0.4851 0.8400 0.0004 25 1 -0.1689 -1.4438 -1.5348 26 1 -1.3161 -3.5271 -2.0935 27 1 -0.5449 -6.7136 -0.7029 28 1 -2.8130 -7.3872 -1.6004 29 1 -4.1801 -7.5142 -3.6418 30 1 -4.5056 -6.7949 -5.9261 31 1 -3.4595 -5.7276 -6.6938 32 1 -0.1459 -4.6734 -3.5544 33 1 1.5197 -5.7391 0.2423 34 1 2.6889 -3.6690 0.8045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212112655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:46 Heat of formation + Delta-G solvation = 24.972261 kcal Electronic energy + Delta-G solvation = -19308.465931 eV Core-core repulsion = 16230.465965 eV Total energy + Delta-G solvation = -3077.999966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.89245 -39.45400 -37.54511 -36.84231 -35.28089 -33.88638 -31.87228 -31.21340 -30.73888 -28.33252 -26.28712 -24.02743 -23.15347 -22.65300 -21.76446 -19.20481 -18.43068 -18.34137 -17.63257 -17.36050 -16.83925 -15.74761 -15.60487 -15.26913 -14.84976 -14.70788 -14.63319 -14.37627 -13.89259 -13.78027 -13.59859 -13.17000 -12.95977 -12.75381 -12.55310 -12.43546 -12.23613 -11.91283 -11.85387 -11.60410 -11.27957 -11.01865 -10.43475 -9.72239 -9.42650 -8.87026 -8.55345 -7.72763 -6.10668 0.31709 0.55245 1.10728 1.17423 1.26402 1.39577 1.50644 1.57716 2.24631 2.71396 2.79234 2.93253 3.06346 3.80160 3.92250 4.29752 4.40209 4.46890 4.47463 4.61099 4.84780 5.03732 5.04961 5.18049 5.23812 5.27397 5.38209 5.46411 5.62531 5.75462 5.83446 5.97435 6.14490 6.35016 6.53221 6.64212 6.82941 7.01835 7.03393 7.09240 7.21635 8.42484 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.004263 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.923797 B = 6565.905997 C = 7445.861769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.032 3.968 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.501 4.501 8 H 0.073 0.927 9 C 0.055 3.945 10 C -0.155 4.155 11 C -0.141 4.141 12 C 0.068 3.932 13 N -0.675 5.675 14 C 0.137 3.863 15 C -0.116 4.116 16 C -0.149 4.149 17 C 0.186 3.814 18 N -0.868 5.868 19 C -0.097 4.097 20 Cl -0.080 7.080 21 C -0.127 4.127 22 C -0.134 4.134 23 C -0.208 4.208 24 H 0.284 0.716 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.410 0.590 28 H 0.151 0.849 29 H 0.164 0.836 30 H 0.412 0.588 31 H 0.400 0.600 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 -12.157 -8.581 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.052 3.948 10 C -0.175 4.175 11 C -0.162 4.162 12 C -0.028 4.028 13 N -0.300 5.300 14 C 0.037 3.963 15 C -0.138 4.138 16 C -0.172 4.172 17 C 0.079 3.921 18 N -0.411 5.411 19 C -0.129 4.129 20 Cl -0.052 7.052 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.228 4.228 24 H 0.094 0.906 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.247 0.753 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.242 0.758 31 H 0.229 0.771 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.953 -11.825 -8.704 16.699 hybrid contribution 0.429 0.974 -0.106 1.070 sum -7.524 -10.851 -8.810 15.873 Atomic orbital electron populations 1.69913 1.08838 1.30095 1.37552 1.26664 0.95473 1.04278 0.91630 0.85313 0.78748 0.76056 0.79933 1.18741 1.19459 1.18324 1.19666 0.97401 0.92356 1.43733 0.90851 1.17892 0.92915 0.93268 0.90721 1.20863 0.99327 0.96528 1.00802 1.20352 0.99950 0.91973 1.03885 1.17286 0.95668 0.85597 1.04286 1.41297 1.52903 1.12254 1.23592 1.17579 0.93110 0.99627 0.86025 1.20977 0.92053 1.01138 0.99661 1.20636 1.02616 1.03001 0.90912 1.17472 0.90200 0.94807 0.89592 1.42394 1.30987 1.55412 1.12294 1.20180 0.99545 1.03396 0.89780 1.98311 1.92350 1.73966 1.40553 1.20630 1.00112 1.03190 0.91099 1.20258 0.94966 0.97935 1.02344 1.20770 1.03310 0.92914 1.05792 0.90565 0.88384 0.88566 0.75269 0.83120 0.81902 0.75764 0.77098 0.87377 0.85729 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.65 10.90 21.81 0.24 -45.41 16 2 C 0.03 1.70 5.17 85.21 0.44 2.14 16 3 Si 0.98 39.79 29.59 68.60 2.03 41.82 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.50 -27.82 9.04 23.36 0.21 -27.61 16 8 H 0.07 3.91 7.89 -2.91 -0.02 3.89 16 9 C 0.05 3.02 5.57 -21.27 -0.12 2.90 16 10 C -0.16 -8.46 8.62 22.47 0.19 -8.27 16 11 C -0.14 -6.76 7.79 22.15 0.17 -6.58 16 12 C 0.07 2.88 6.09 38.72 0.24 3.12 16 13 N -0.67 -22.50 5.43 -180.07 -0.98 -23.48 16 14 C 0.14 4.30 5.88 38.22 0.22 4.53 16 15 C -0.12 -2.77 9.96 22.40 0.22 -2.55 16 16 C -0.15 -3.07 9.89 22.38 0.22 -2.85 16 17 C 0.19 4.40 6.76 38.18 0.26 4.66 16 18 N -0.87 -14.72 9.05 -51.15 -0.46 -15.18 16 19 C -0.10 -2.90 6.33 22.43 0.14 -2.76 16 20 Cl -0.08 -2.27 27.58 -2.72 -0.08 -2.35 16 21 C -0.13 -4.39 7.47 22.42 0.17 -4.23 16 22 C -0.13 -5.72 9.87 22.15 0.22 -5.50 16 23 C -0.21 -10.18 9.74 22.47 0.22 -9.96 16 24 H 0.28 14.15 8.30 -92.71 -0.77 13.39 16 25 H 0.10 5.69 6.17 -2.91 -0.02 5.67 16 26 H 0.10 4.49 6.23 -2.91 -0.02 4.47 16 27 H 0.41 11.10 8.88 -92.71 -0.82 10.27 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 29 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.41 4.45 8.84 -92.71 -0.82 3.63 16 31 H 0.40 6.73 7.50 -92.71 -0.70 6.04 16 32 H 0.11 4.37 6.60 -2.91 -0.02 4.35 16 33 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -63.29 304.67 2.40 -60.89 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -1.16 Total: 36.67 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 2.81 Total: -52.95 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.20 Total: -84.07 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.08 Total: -2.35 kcal Total: -63.29 2.40 -60.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212112655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.860 kcal (2) G-P(sol) polarization free energy of solvation -63.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds