Wall clock time and date at job start Tue Mar 31 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86793 * 119.99864 * 2 1 4 4 H 1.48509 * 109.47215 * 274.98366 * 3 2 1 5 5 H 1.48497 * 109.47400 * 34.98242 * 3 2 1 6 6 H 1.48496 * 109.47275 * 154.98645 * 3 2 1 7 7 C 1.39923 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 160.86573 * 7 2 1 9 9 C 1.41407 * 120.00329 * 340.87012 * 7 2 1 10 10 C 1.40791 * 120.20682 * 334.66754 * 9 7 2 11 11 C 1.37657 * 119.89987 * 179.97438 * 10 9 7 12 12 C 1.38513 * 120.32675 * 359.97438 * 11 10 9 13 13 C 1.39319 * 120.41865 * 0.04128 * 12 11 10 14 14 N 1.39694 * 119.95009 * 179.97438 * 13 12 11 15 15 C 1.40008 * 120.00244 * 330.19788 * 14 13 12 16 16 C 1.38896 * 119.99763 * 149.86482 * 15 14 13 17 17 C 1.38083 * 120.01821 * 180.02562 * 16 15 14 18 18 C 1.38848 * 120.01401 * 0.02562 * 17 16 15 19 19 N 1.40046 * 120.00190 * 179.97438 * 18 17 16 20 20 C 1.38951 * 119.99253 * 359.97438 * 18 17 16 21 21 Cl 1.73605 * 120.00836 * 180.02562 * 20 18 17 22 22 C 1.38174 * 119.98396 * 359.72816 * 20 18 17 23 23 C 1.38343 * 120.09666 * 359.95711 * 13 12 11 24 24 H 0.96997 * 119.99747 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.04774 * 359.95719 * 10 9 7 26 26 H 1.07994 * 119.83325 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.79225 * 180.02562 * 12 11 10 28 28 H 0.97003 * 119.99951 * 150.20346 * 14 13 12 29 29 H 1.08005 * 119.99113 * 0.03043 * 16 15 14 30 30 H 1.08004 * 119.99552 * 180.02562 * 17 16 15 31 31 H 0.96999 * 119.99960 * 0.02562 * 19 18 17 32 32 H 0.97001 * 120.00030 * 179.97438 * 19 18 17 33 33 H 1.08007 * 120.00973 * 180.27661 * 22 20 18 34 34 H 1.07999 * 120.16294 * 180.29689 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3845 2.1072 -1.3949 5 1 1.4964 2.6200 0.8027 6 1 3.5886 1.4121 0.5920 7 6 2.0079 -1.2118 0.0005 8 1 3.0432 -1.2378 -0.3060 9 6 1.3595 -2.4024 0.4024 10 6 0.2563 -2.3482 1.2755 11 6 -0.3706 -3.5112 1.6621 12 6 0.0782 -4.7359 1.1961 13 6 1.1688 -4.8052 0.3319 14 7 1.6135 -6.0457 -0.1317 15 6 1.4504 -7.1886 0.6603 16 6 1.2826 -8.4305 0.0612 17 6 1.1212 -9.5579 0.8420 18 6 1.1259 -9.4506 2.2263 19 7 0.9616 -10.5941 3.0179 20 6 1.2937 -8.2085 2.8261 21 17 1.3003 -8.0739 4.5569 22 6 1.4614 -7.0813 2.0448 23 6 1.8117 -3.6474 -0.0679 24 1 -0.4849 0.8400 -0.0004 25 1 -0.0974 -1.3956 1.6415 26 1 -1.2164 -3.4684 2.3322 27 1 -0.4203 -5.6429 1.5047 28 1 2.0354 -6.1152 -1.0024 29 1 1.2785 -8.5143 -1.0155 30 1 0.9912 -10.5234 0.3758 31 1 0.8449 -11.4612 2.5991 32 1 0.9653 -10.5192 3.9850 33 1 1.5963 -6.1163 2.5106 34 1 2.6543 -3.6995 -0.7416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212119000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:45 Heat of formation + Delta-G solvation = 36.874810 kcal Electronic energy + Delta-G solvation = -19190.743846 eV Core-core repulsion = 16113.260013 eV Total energy + Delta-G solvation = -3077.483833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62710 -37.80243 -36.32257 -35.48601 -33.69513 -32.60289 -30.60064 -29.80534 -28.61962 -26.35414 -25.25293 -22.84014 -21.86023 -20.73418 -20.27844 -17.67056 -17.26278 -16.86770 -16.42175 -15.46248 -15.01028 -14.55315 -14.33654 -14.09308 -13.66081 -13.48842 -13.18805 -12.84705 -12.55015 -12.19121 -11.96965 -11.52343 -11.37726 -11.21596 -11.07765 -10.86689 -10.78737 -10.58247 -10.47168 -9.87520 -9.53902 -9.31503 -8.93033 -8.59637 -7.48761 -7.41496 -6.77515 -6.24109 -4.36620 1.40492 1.73805 2.34070 2.79938 3.06742 3.08706 3.12624 3.23884 3.85559 3.93530 3.97975 4.10627 4.64307 4.95155 5.30505 5.55348 5.61355 5.71130 5.98544 6.13563 6.29472 6.32411 6.48816 6.54685 6.75633 6.94762 7.03964 7.08906 7.24930 7.29899 7.44761 7.73522 7.75735 7.81994 8.05499 8.12257 8.39691 8.43049 8.67441 8.90860 8.99374 10.18735 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030113 B = 0.003601 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.611448 B = 7774.671900 C = 8226.170084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.079 3.921 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.133 3.867 10 C -0.181 4.181 11 C -0.083 4.083 12 C -0.271 4.271 13 C 0.188 3.812 14 N -0.690 5.690 15 C 0.166 3.834 16 C -0.129 4.129 17 C -0.155 4.155 18 C 0.178 3.822 19 N -0.882 5.882 20 C -0.077 4.077 21 Cl -0.080 7.080 22 C -0.105 4.105 23 C -0.262 4.262 24 H 0.280 0.720 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.400 0.600 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.395 0.605 32 H 0.396 0.604 33 H 0.142 0.858 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 -14.990 3.178 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.130 3.870 10 C -0.201 4.201 11 C -0.102 4.102 12 C -0.293 4.293 13 C 0.093 3.907 14 N -0.313 5.313 15 C 0.065 3.935 16 C -0.152 4.152 17 C -0.178 4.178 18 C 0.074 3.926 19 N -0.425 5.425 20 C -0.108 4.108 21 Cl -0.052 7.052 22 C -0.127 4.127 23 C -0.285 4.285 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.235 0.765 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.223 0.777 32 H 0.225 0.775 33 H 0.160 0.840 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.249 -14.697 3.380 15.133 hybrid contribution 0.348 0.482 -0.071 0.599 sum 1.597 -14.216 3.309 14.683 Atomic orbital electron populations 1.69853 1.07604 1.29215 1.34822 1.25887 0.94662 1.01246 0.92166 0.86358 0.80879 0.80841 0.79001 1.19635 1.20034 1.18402 1.19536 0.98625 0.91401 1.39894 0.90471 1.17356 0.90423 0.91321 0.87900 1.21226 1.00436 0.96722 1.01747 1.20490 0.98151 0.92716 0.98804 1.20135 1.01620 0.96778 1.10769 1.17422 0.93337 0.83225 0.96667 1.42074 1.65607 1.03851 1.19816 1.17410 0.99326 0.86966 0.89791 1.20659 1.03600 0.91286 0.99659 1.20195 1.08435 0.98737 0.90465 1.17285 0.98811 0.85970 0.90580 1.42409 1.85171 1.06563 1.08333 1.20071 1.13558 0.93432 0.83752 1.98318 1.97449 1.98060 1.11356 1.20778 1.01673 0.98117 0.92155 1.20628 1.05474 0.91770 1.10602 0.90895 0.86810 0.89267 0.89079 0.76505 0.85748 0.85690 0.77675 0.77453 0.84029 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.33 11.09 55.55 0.62 -19.72 16 2 C 0.08 1.96 5.10 -17.34 -0.09 1.87 16 3 Si 0.90 18.53 29.60 -169.99 -5.03 13.50 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.47 -12.25 9.04 -37.75 -0.34 -12.59 16 8 H 0.08 1.96 7.92 -52.49 -0.42 1.54 16 9 C 0.13 3.51 5.56 -106.85 -0.59 2.92 16 10 C -0.18 -4.69 8.69 -38.83 -0.34 -5.03 16 11 C -0.08 -1.94 10.02 -39.69 -0.40 -2.34 16 12 C -0.27 -6.08 7.93 -39.08 -0.31 -6.39 16 13 C 0.19 4.11 5.92 -83.83 -0.50 3.62 16 14 N -0.69 -12.33 5.46 -8.41 -0.05 -12.38 16 15 C 0.17 2.72 5.91 -83.65 -0.49 2.23 16 16 C -0.13 -1.74 9.95 -39.39 -0.39 -2.14 16 17 C -0.15 -1.87 9.89 -39.41 -0.39 -2.26 16 18 C 0.18 2.28 6.76 -83.61 -0.56 1.72 16 19 N -0.88 -8.51 9.06 32.48 0.29 -8.21 16 20 C -0.08 -1.14 6.33 -39.34 -0.25 -1.39 16 21 Cl -0.08 -1.10 27.58 -51.86 -1.43 -2.53 16 22 C -0.10 -1.77 7.68 -39.37 -0.30 -2.07 16 23 C -0.26 -6.31 9.69 -38.67 -0.37 -6.69 16 24 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 25 H 0.11 3.04 6.27 -52.48 -0.33 2.71 16 26 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.09 1.95 6.59 -52.49 -0.35 1.60 16 28 H 0.40 6.24 8.90 -40.82 -0.36 5.88 16 29 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.40 2.79 8.84 -40.82 -0.36 2.43 16 32 H 0.40 3.65 7.50 -40.82 -0.31 3.35 16 33 H 0.14 2.69 6.63 -52.48 -0.35 2.34 16 34 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -27.78 305.76 -9.62 -37.39 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -3.29 Total: 15.88 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -5.33 Total: -28.54 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.86 Total: -40.31 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.43 Total: -2.53 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.78 -9.62 -37.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212119000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.268 kcal (2) G-P(sol) polarization free energy of solvation -27.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds