Wall clock time and date at job start Tue Mar 31 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86793 * 119.99864 * 2 1 4 4 H 1.48509 * 109.47215 * 274.98366 * 3 2 1 5 5 H 1.48497 * 109.47400 * 34.98242 * 3 2 1 6 6 H 1.48496 * 109.47275 * 154.98645 * 3 2 1 7 7 C 1.39923 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 160.86573 * 7 2 1 9 9 C 1.41407 * 120.00329 * 340.87012 * 7 2 1 10 10 C 1.40791 * 120.20682 * 334.66754 * 9 7 2 11 11 C 1.37657 * 119.89987 * 179.97438 * 10 9 7 12 12 C 1.38513 * 120.32675 * 359.97438 * 11 10 9 13 13 C 1.39319 * 120.41865 * 0.04128 * 12 11 10 14 14 N 1.39694 * 119.95009 * 179.97438 * 13 12 11 15 15 C 1.40008 * 120.00244 * 330.19788 * 14 13 12 16 16 C 1.38896 * 119.99763 * 149.86482 * 15 14 13 17 17 C 1.38083 * 120.01821 * 180.02562 * 16 15 14 18 18 C 1.38848 * 120.01401 * 0.02562 * 17 16 15 19 19 N 1.40046 * 120.00190 * 179.97438 * 18 17 16 20 20 C 1.38951 * 119.99253 * 359.97438 * 18 17 16 21 21 Cl 1.73605 * 120.00836 * 180.02562 * 20 18 17 22 22 C 1.38174 * 119.98396 * 359.72816 * 20 18 17 23 23 C 1.38343 * 120.09666 * 359.95711 * 13 12 11 24 24 H 0.96997 * 119.99747 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.04774 * 359.95719 * 10 9 7 26 26 H 1.07994 * 119.83325 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.79225 * 180.02562 * 12 11 10 28 28 H 0.97003 * 119.99951 * 150.20346 * 14 13 12 29 29 H 1.08005 * 119.99113 * 0.03043 * 16 15 14 30 30 H 1.08004 * 119.99552 * 180.02562 * 17 16 15 31 31 H 0.96999 * 119.99960 * 0.02562 * 19 18 17 32 32 H 0.97001 * 120.00030 * 179.97438 * 19 18 17 33 33 H 1.08007 * 120.00973 * 180.27661 * 22 20 18 34 34 H 1.07999 * 120.16294 * 180.29689 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3845 2.1072 -1.3949 5 1 1.4964 2.6200 0.8027 6 1 3.5886 1.4121 0.5920 7 6 2.0079 -1.2118 0.0005 8 1 3.0432 -1.2378 -0.3060 9 6 1.3595 -2.4024 0.4024 10 6 0.2563 -2.3482 1.2755 11 6 -0.3706 -3.5112 1.6621 12 6 0.0782 -4.7359 1.1961 13 6 1.1688 -4.8052 0.3319 14 7 1.6135 -6.0457 -0.1317 15 6 1.4504 -7.1886 0.6603 16 6 1.2826 -8.4305 0.0612 17 6 1.1212 -9.5579 0.8420 18 6 1.1259 -9.4506 2.2263 19 7 0.9616 -10.5941 3.0179 20 6 1.2937 -8.2085 2.8261 21 17 1.3003 -8.0739 4.5569 22 6 1.4614 -7.0813 2.0448 23 6 1.8117 -3.6474 -0.0679 24 1 -0.4849 0.8400 -0.0004 25 1 -0.0974 -1.3956 1.6415 26 1 -1.2164 -3.4684 2.3322 27 1 -0.4203 -5.6429 1.5047 28 1 2.0354 -6.1152 -1.0024 29 1 1.2785 -8.5143 -1.0155 30 1 0.9912 -10.5234 0.3758 31 1 0.8449 -11.4612 2.5991 32 1 0.9653 -10.5192 3.9850 33 1 1.5963 -6.1163 2.5106 34 1 2.6543 -3.6995 -0.7416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212119000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:44 Heat of formation + Delta-G solvation = 21.460749 kcal Electronic energy + Delta-G solvation = -19191.412250 eV Core-core repulsion = 16113.260013 eV Total energy + Delta-G solvation = -3078.152237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86426 -39.38956 -37.53086 -36.81899 -35.30645 -33.98571 -31.89205 -31.51403 -30.13731 -27.69440 -27.13546 -24.02823 -23.19166 -22.49517 -21.89104 -19.34410 -18.46443 -17.97086 -17.64343 -17.17285 -16.60341 -16.34302 -15.58508 -15.29512 -14.92724 -14.73057 -14.64307 -14.44096 -14.05270 -13.69623 -13.58654 -13.12958 -12.76796 -12.67741 -12.48571 -12.36955 -12.19906 -11.97444 -11.90532 -11.68381 -11.34269 -11.03816 -10.46894 -9.73207 -9.37756 -8.83122 -8.63604 -7.63920 -6.33773 0.30282 0.54758 1.01137 1.22699 1.30344 1.39961 1.51937 1.57538 2.22501 2.62513 2.74732 2.89216 3.04453 3.78647 3.91350 4.28310 4.41188 4.43664 4.58522 4.67621 4.85882 5.03959 5.07745 5.12470 5.22437 5.24848 5.35348 5.38958 5.61655 5.69604 5.94122 6.01764 6.15685 6.24351 6.52762 6.59742 6.82694 6.97126 6.98609 7.03395 7.14634 8.35126 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030113 B = 0.003601 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.611448 B = 7774.671900 C = 8226.170084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.107 3.893 10 C -0.212 4.212 11 C -0.084 4.084 12 C -0.270 4.270 13 C 0.205 3.795 14 N -0.686 5.686 15 C 0.134 3.866 16 C -0.114 4.114 17 C -0.148 4.148 18 C 0.190 3.810 19 N -0.867 5.867 20 C -0.096 4.096 21 Cl -0.077 7.077 22 C -0.121 4.121 23 C -0.282 4.282 24 H 0.288 0.712 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.410 0.590 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.412 0.588 32 H 0.400 0.600 33 H 0.111 0.889 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -17.459 2.811 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.093 0.907 9 C 0.104 3.896 10 C -0.232 4.232 11 C -0.102 4.102 12 C -0.292 4.292 13 C 0.109 3.891 14 N -0.312 5.312 15 C 0.035 3.965 16 C -0.136 4.136 17 C -0.171 4.171 18 C 0.083 3.917 19 N -0.410 5.410 20 C -0.128 4.128 21 Cl -0.048 7.048 22 C -0.144 4.144 23 C -0.305 4.305 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.247 0.753 29 H 0.167 0.833 30 H 0.182 0.818 31 H 0.243 0.757 32 H 0.230 0.770 33 H 0.129 0.871 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.355 -17.266 3.022 17.581 hybrid contribution 0.279 0.923 0.108 0.970 sum 1.635 -16.343 3.130 16.720 Atomic orbital electron populations 1.69906 1.09045 1.30555 1.35232 1.26733 0.95417 1.04431 0.91117 0.85236 0.79231 0.76112 0.79391 1.18627 1.19055 1.18359 1.19791 0.98851 0.92705 1.41803 0.90711 1.17698 0.91032 0.92459 0.88423 1.21132 1.01771 0.96782 1.03499 1.20728 0.98342 0.92538 0.98640 1.20276 1.01669 0.96676 1.10602 1.17405 0.92194 0.84412 0.95120 1.41921 1.65793 1.02983 1.20479 1.17598 1.02003 0.87392 0.89507 1.20955 1.01345 0.90191 1.01140 1.20626 1.06656 0.99910 0.89930 1.17468 0.96868 0.85999 0.91355 1.42423 1.83621 1.06453 1.08510 1.20142 1.14812 0.93849 0.84005 1.98313 1.97475 1.98123 1.10934 1.20604 1.03416 0.97583 0.92806 1.20749 1.06186 0.92064 1.11520 0.90144 0.88555 0.87426 0.87821 0.75309 0.83255 0.81810 0.75725 0.77017 0.87123 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.70 11.09 21.82 0.24 -43.46 16 2 C 0.04 1.97 5.10 85.25 0.43 2.40 16 3 Si 0.98 38.68 29.60 68.60 2.03 40.71 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.50 -27.60 9.04 23.46 0.21 -27.39 16 8 H 0.07 3.97 7.92 -2.91 -0.02 3.95 16 9 C 0.11 5.90 5.56 -21.31 -0.12 5.79 16 10 C -0.21 -11.49 8.69 22.76 0.20 -11.29 16 11 C -0.08 -4.05 10.02 22.20 0.22 -3.83 16 12 C -0.27 -12.27 7.93 22.60 0.18 -12.09 16 13 C 0.21 9.13 5.92 38.17 0.23 9.35 16 14 N -0.69 -24.16 5.46 -180.51 -0.99 -25.14 16 15 C 0.13 4.21 5.91 38.14 0.23 4.44 16 16 C -0.11 -2.69 9.95 22.39 0.22 -2.47 16 17 C -0.15 -2.92 9.89 22.38 0.22 -2.70 16 18 C 0.19 4.24 6.76 38.15 0.26 4.50 16 19 N -0.87 -13.45 9.06 -51.15 -0.46 -13.91 16 20 C -0.10 -2.72 6.33 22.43 0.14 -2.58 16 21 Cl -0.08 -2.03 27.58 -2.72 -0.08 -2.10 16 22 C -0.12 -4.06 7.68 22.40 0.17 -3.89 16 23 C -0.28 -14.07 9.69 22.86 0.22 -13.85 16 24 H 0.29 13.79 8.30 -92.71 -0.77 13.03 16 25 H 0.10 5.45 6.27 -2.91 -0.02 5.44 16 26 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 27 H 0.10 4.41 6.59 -2.91 -0.02 4.39 16 28 H 0.41 12.43 8.90 -92.71 -0.83 11.61 16 29 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.41 3.91 8.84 -92.71 -0.82 3.09 16 32 H 0.40 6.10 7.50 -92.71 -0.70 5.41 16 33 H 0.11 4.35 6.63 -2.91 -0.02 4.33 16 34 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -62.61 305.76 2.40 -60.20 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -1.16 Total: 37.31 kcal Atomic # 6 Polarization: -56.43 SS G_CDS: 2.82 Total: -53.61 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -1.21 Total: -82.52 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.10 kcal Total: -62.61 2.40 -60.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212119000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.664 kcal (2) G-P(sol) polarization free energy of solvation -62.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds