Wall clock time and date at job start Tue Mar 31 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86797 * 120.00233 * 2 1 4 4 H 1.48497 * 109.47389 * 269.99863 * 3 2 1 5 5 H 1.48503 * 109.47147 * 30.00039 * 3 2 1 6 6 H 1.48502 * 109.47090 * 150.00026 * 3 2 1 7 7 C 1.39893 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99892 * 191.91491 * 7 2 1 9 9 C 1.40993 * 120.00139 * 11.91094 * 7 2 1 10 10 C 1.40748 * 120.31325 * 26.55815 * 9 7 2 11 11 C 1.36410 * 119.95552 * 179.72339 * 10 9 7 12 12 C 1.38942 * 120.61393 * 0.30121 * 11 10 9 13 13 C 1.38094 * 120.63980 * 0.02562 * 12 11 10 14 14 C 1.38843 * 120.01569 * 359.97438 * 13 12 11 15 15 N 1.38600 * 120.29961 * 179.97438 * 14 13 12 16 16 C 1.39803 * 119.99614 * 6.01890 * 15 14 13 17 17 C 1.38770 * 120.10054 * 42.48189 * 16 15 14 18 18 C 1.38297 * 119.97583 * 179.74161 * 17 16 15 19 19 Cl 1.73602 * 119.90720 * 180.23220 * 18 17 16 20 20 C 1.38407 * 120.18576 * 0.53470 * 18 17 16 21 21 C 1.38246 * 120.20293 * 359.71970 * 20 18 17 22 22 C 1.38677 * 120.01498 * 0.02562 * 21 20 18 23 23 N 1.39959 * 120.09132 * 179.97438 * 22 21 20 24 24 H 0.97003 * 119.99402 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.01755 * 359.97438 * 10 9 7 26 26 H 1.08003 * 119.69117 * 180.27882 * 11 10 9 27 27 H 1.08009 * 119.68402 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.98692 * 179.97438 * 13 12 11 29 29 H 0.96993 * 119.99754 * 186.01994 * 15 14 13 30 30 H 1.07997 * 120.01385 * 359.97438 * 17 16 15 31 31 H 1.07999 * 119.89935 * 179.74900 * 20 18 17 32 32 H 1.07994 * 119.99538 * 180.02562 * 21 20 18 33 33 H 0.96997 * 119.99622 * 180.02562 * 23 22 21 34 34 H 0.96992 * 120.00101 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4406 2.6527 0.7001 6 1 3.5406 1.4400 0.7000 7 6 2.0084 -1.2115 0.0005 8 1 3.0710 -1.2216 0.1937 9 6 1.3262 -2.4195 -0.2509 10 6 0.1485 -2.4231 -1.0216 11 6 -0.5026 -3.5968 -1.2651 12 6 -0.0179 -4.7942 -0.7535 13 6 1.1316 -4.8187 0.0114 14 6 1.8153 -3.6395 0.2756 15 7 2.9693 -3.6572 1.0430 16 6 3.5198 -4.8763 1.4493 17 6 3.5925 -5.9383 0.5590 18 6 4.1425 -7.1415 0.9621 19 17 4.2381 -8.4670 -0.1550 20 6 4.6113 -7.2939 2.2554 21 6 4.5378 -6.2426 3.1502 22 6 3.9927 -5.0307 2.7534 23 7 3.9170 -3.9655 3.6580 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2372 -1.4977 -1.4233 26 1 -1.4035 -3.5952 -1.8608 27 1 -0.5457 -5.7147 -0.9553 28 1 1.4988 -5.7554 0.4041 29 1 3.3948 -2.8238 1.2981 30 1 3.2232 -5.8241 -0.4494 31 1 5.0362 -8.2368 2.5665 32 1 4.9049 -6.3650 4.1584 33 1 3.5352 -3.1186 3.3791 34 1 4.2464 -4.0742 4.5638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212437401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:54 Heat of formation + Delta-G solvation = 43.227626 kcal Electronic energy + Delta-G solvation = -19779.692686 eV Core-core repulsion = 16702.484332 eV Total energy + Delta-G solvation = -3077.208354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72800 -37.71616 -36.28134 -34.45987 -34.01011 -33.56673 -30.26832 -29.12320 -28.53667 -27.15374 -25.19845 -22.47760 -22.03162 -20.68845 -20.03029 -17.47588 -17.21297 -16.90206 -16.24081 -15.92800 -14.94078 -14.69053 -14.19011 -14.06774 -13.56733 -13.48578 -12.86909 -12.69423 -12.34278 -12.10009 -11.86312 -11.76581 -11.43430 -11.34710 -11.14692 -10.98385 -10.60663 -10.52424 -9.98240 -9.81332 -9.61373 -9.57815 -9.25144 -8.29956 -7.42344 -7.32311 -6.76944 -6.27009 -4.29434 1.61587 1.67969 2.53077 2.76162 3.03820 3.05201 3.09483 3.18306 3.89247 3.99936 4.02879 4.30105 4.65040 5.07794 5.36954 5.60610 5.68848 5.77178 6.06521 6.22353 6.31944 6.40346 6.43898 6.55427 6.63325 6.87477 6.96110 7.11214 7.18697 7.38966 7.57574 7.67151 7.77581 7.94119 8.10304 8.11669 8.33631 8.58072 8.66593 8.86369 8.97795 10.20522 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.005129 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.918665 B = 5457.340464 C = 6444.732387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.071 0.929 9 C 0.077 3.923 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.198 4.198 13 C -0.158 4.158 14 C 0.078 3.922 15 N -0.669 5.669 16 C 0.138 3.862 17 C -0.109 4.109 18 C -0.062 4.062 19 Cl -0.090 7.090 20 C -0.105 4.105 21 C -0.169 4.169 22 C 0.178 3.822 23 N -0.876 5.876 24 H 0.278 0.722 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.403 0.597 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.400 0.600 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.131 -7.063 5.015 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.089 0.911 9 C 0.072 3.928 10 C -0.155 4.155 11 C -0.157 4.157 12 C -0.218 4.218 13 C -0.180 4.180 14 C -0.018 4.018 15 N -0.294 5.294 16 C 0.035 3.965 17 C -0.132 4.132 18 C -0.090 4.090 19 Cl -0.062 7.062 20 C -0.126 4.126 21 C -0.193 4.193 22 C 0.071 3.929 23 N -0.416 5.416 24 H 0.089 0.911 25 H 0.142 0.858 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.240 0.760 30 H 0.157 0.843 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.230 0.770 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.870 -7.086 4.859 11.001 hybrid contribution 0.370 1.272 0.297 1.357 sum 7.240 -5.814 5.156 10.621 Atomic orbital electron populations 1.69821 1.07282 1.28806 1.36920 1.25778 0.94771 1.00901 0.92660 0.86322 0.80164 0.80967 0.79244 1.19434 1.20421 1.18922 1.19150 0.95551 0.90684 1.44373 0.91109 1.17243 0.93645 0.90270 0.91605 1.20969 0.97430 0.96988 1.00122 1.20402 0.99549 0.93448 1.02263 1.20226 0.98901 0.96472 1.06206 1.20459 0.97883 0.95716 1.03914 1.17848 0.89595 0.94922 0.99469 1.41368 1.26715 1.04147 1.57121 1.17088 1.00241 0.88868 0.90300 1.20838 1.00713 0.91679 0.99995 1.20340 1.07616 0.89604 0.91483 1.98321 1.97410 1.47584 1.62867 1.20503 1.01575 0.98950 0.91528 1.20205 1.07166 0.91939 1.00031 1.17804 0.98084 0.88947 0.88052 1.42349 1.71783 1.14015 1.13487 0.91058 0.85795 0.89556 0.89355 0.88050 0.75972 0.84313 0.85804 0.85811 0.77037 0.77710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.05 10.75 55.55 0.60 -19.45 16 2 C 0.08 1.80 5.25 -17.33 -0.09 1.71 16 3 Si 0.91 18.03 29.58 -169.99 -5.03 13.00 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.47 -11.50 8.44 -37.92 -0.32 -11.82 16 8 H 0.07 1.65 6.81 -52.49 -0.36 1.29 16 9 C 0.08 1.93 5.59 -106.63 -0.60 1.34 16 10 C -0.13 -3.42 8.62 -39.29 -0.34 -3.76 16 11 C -0.14 -3.20 9.96 -39.98 -0.40 -3.60 16 12 C -0.20 -4.44 10.03 -39.37 -0.40 -4.83 16 13 C -0.16 -3.53 8.05 -39.41 -0.32 -3.85 16 14 C 0.08 1.80 6.48 -83.30 -0.54 1.26 16 15 N -0.67 -13.15 4.89 -7.90 -0.04 -13.19 16 16 C 0.14 2.43 5.89 -83.53 -0.49 1.94 16 17 C -0.11 -1.89 7.13 -39.36 -0.28 -2.17 16 18 C -0.06 -0.94 6.32 -39.50 -0.25 -1.19 16 19 Cl -0.09 -1.28 28.95 -51.86 -1.50 -2.79 16 20 C -0.10 -1.41 9.82 -39.52 -0.39 -1.80 16 21 C -0.17 -2.22 9.89 -39.42 -0.39 -2.61 16 22 C 0.18 2.67 6.78 -83.49 -0.57 2.10 16 23 N -0.88 -11.02 9.08 32.55 0.30 -10.72 16 24 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 25 H 0.12 3.26 6.08 -52.49 -0.32 2.94 16 26 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 27 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.10 2.13 5.27 -52.49 -0.28 1.85 16 29 H 0.40 7.65 6.37 -40.82 -0.26 7.39 16 30 H 0.14 2.60 6.64 -52.49 -0.35 2.25 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.40 5.34 7.62 -40.82 -0.31 5.03 16 34 H 0.40 3.80 8.84 -40.82 -0.36 3.44 16 LS Contribution 300.97 15.07 4.54 4.54 Total: -1.00 -26.32 300.97 -9.56 -35.88 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -3.06 Total: 20.03 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -5.36 Total: -27.29 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.85 Total: -43.36 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.32 -9.56 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212437401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.109 kcal (2) G-P(sol) polarization free energy of solvation -26.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds