Wall clock time and date at job start Tue Mar 31 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86797 * 120.00233 * 2 1 4 4 H 1.48497 * 109.47389 * 269.99863 * 3 2 1 5 5 H 1.48503 * 109.47147 * 30.00039 * 3 2 1 6 6 H 1.48502 * 109.47090 * 150.00026 * 3 2 1 7 7 C 1.39893 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99892 * 191.91491 * 7 2 1 9 9 C 1.40993 * 120.00139 * 11.91094 * 7 2 1 10 10 C 1.40748 * 120.31325 * 26.55815 * 9 7 2 11 11 C 1.36410 * 119.95552 * 179.72339 * 10 9 7 12 12 C 1.38942 * 120.61393 * 0.30121 * 11 10 9 13 13 C 1.38094 * 120.63980 * 0.02562 * 12 11 10 14 14 C 1.38843 * 120.01569 * 359.97438 * 13 12 11 15 15 N 1.38600 * 120.29961 * 179.97438 * 14 13 12 16 16 C 1.39803 * 119.99614 * 6.01890 * 15 14 13 17 17 C 1.38770 * 120.10054 * 42.48189 * 16 15 14 18 18 C 1.38297 * 119.97583 * 179.74161 * 17 16 15 19 19 Cl 1.73602 * 119.90720 * 180.23220 * 18 17 16 20 20 C 1.38407 * 120.18576 * 0.53470 * 18 17 16 21 21 C 1.38246 * 120.20293 * 359.71970 * 20 18 17 22 22 C 1.38677 * 120.01498 * 0.02562 * 21 20 18 23 23 N 1.39959 * 120.09132 * 179.97438 * 22 21 20 24 24 H 0.97003 * 119.99402 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.01755 * 359.97438 * 10 9 7 26 26 H 1.08003 * 119.69117 * 180.27882 * 11 10 9 27 27 H 1.08009 * 119.68402 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.98692 * 179.97438 * 13 12 11 29 29 H 0.96993 * 119.99754 * 186.01994 * 15 14 13 30 30 H 1.07997 * 120.01385 * 359.97438 * 17 16 15 31 31 H 1.07999 * 119.89935 * 179.74900 * 20 18 17 32 32 H 1.07994 * 119.99538 * 180.02562 * 21 20 18 33 33 H 0.96997 * 119.99622 * 180.02562 * 23 22 21 34 34 H 0.96992 * 120.00101 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4406 2.6527 0.7001 6 1 3.5406 1.4400 0.7000 7 6 2.0084 -1.2115 0.0005 8 1 3.0710 -1.2216 0.1937 9 6 1.3262 -2.4195 -0.2509 10 6 0.1485 -2.4231 -1.0216 11 6 -0.5026 -3.5968 -1.2651 12 6 -0.0179 -4.7942 -0.7535 13 6 1.1316 -4.8187 0.0114 14 6 1.8153 -3.6395 0.2756 15 7 2.9693 -3.6572 1.0430 16 6 3.5198 -4.8763 1.4493 17 6 3.5925 -5.9383 0.5590 18 6 4.1425 -7.1415 0.9621 19 17 4.2381 -8.4670 -0.1550 20 6 4.6113 -7.2939 2.2554 21 6 4.5378 -6.2426 3.1502 22 6 3.9927 -5.0307 2.7534 23 7 3.9170 -3.9655 3.6580 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2372 -1.4977 -1.4233 26 1 -1.4035 -3.5952 -1.8608 27 1 -0.5457 -5.7147 -0.9553 28 1 1.4988 -5.7554 0.4041 29 1 3.3948 -2.8238 1.2981 30 1 3.2232 -5.8241 -0.4494 31 1 5.0362 -8.2368 2.5665 32 1 4.9049 -6.3650 4.1584 33 1 3.5352 -3.1186 3.3791 34 1 4.2464 -4.0742 4.5638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212437401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:54 Heat of formation + Delta-G solvation = 29.759673 kcal Electronic energy + Delta-G solvation = -19780.276700 eV Core-core repulsion = 16702.484332 eV Total energy + Delta-G solvation = -3077.792368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06227 -39.32194 -37.44932 -35.95407 -35.45288 -35.03475 -31.87409 -30.70188 -29.94704 -28.52925 -26.99446 -23.78208 -23.48650 -22.27165 -21.63717 -19.15308 -18.64466 -18.16950 -17.65952 -17.26910 -16.59630 -16.08839 -15.66404 -15.32420 -14.93980 -14.79189 -14.48224 -14.36632 -13.90861 -13.70104 -13.18951 -13.04271 -12.95880 -12.79620 -12.78074 -12.49327 -12.14088 -11.78690 -11.45632 -11.37167 -11.36638 -11.04082 -10.96784 -9.67181 -9.27331 -8.67435 -8.48107 -7.81933 -6.13478 0.38860 0.49235 1.02396 1.29989 1.39259 1.40729 1.51537 1.53925 2.23135 2.69009 2.79557 2.89020 3.09242 3.79636 3.95365 4.27351 4.44113 4.49749 4.59292 4.64197 4.80336 4.93043 5.07161 5.18962 5.24294 5.31432 5.40763 5.47490 5.60075 5.76548 5.87996 5.96277 6.26066 6.31396 6.46059 6.59950 6.85265 6.94365 7.00092 7.15962 7.19556 8.44513 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.005129 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.918665 B = 5457.340464 C = 6444.732387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.034 3.966 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.488 4.488 8 H 0.075 0.925 9 C 0.042 3.958 10 C -0.160 4.160 11 C -0.150 4.150 12 C -0.197 4.197 13 C -0.169 4.169 14 C 0.087 3.913 15 N -0.669 5.669 16 C 0.103 3.897 17 C -0.118 4.118 18 C -0.075 4.075 19 Cl -0.084 7.084 20 C -0.089 4.089 21 C -0.161 4.161 22 C 0.181 3.819 23 N -0.866 5.866 24 H 0.282 0.718 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.403 0.597 30 H 0.116 0.884 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.397 0.603 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.817 -8.243 6.844 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.519 4.519 8 H 0.094 0.906 9 C 0.037 3.963 10 C -0.180 4.180 11 C -0.170 4.170 12 C -0.217 4.217 13 C -0.191 4.191 14 C -0.011 4.011 15 N -0.294 5.294 16 C 0.002 3.998 17 C -0.141 4.141 18 C -0.104 4.104 19 Cl -0.055 7.055 20 C -0.109 4.109 21 C -0.185 4.185 22 C 0.073 3.927 23 N -0.407 5.407 24 H 0.093 0.907 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.240 0.760 30 H 0.134 0.866 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.225 0.775 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 8.595 -8.304 6.734 13.717 hybrid contribution -0.078 1.434 -0.198 1.449 sum 8.517 -6.870 6.536 12.746 Atomic orbital electron populations 1.69907 1.08750 1.29780 1.37964 1.26582 0.95439 1.03987 0.91890 0.85248 0.79057 0.76599 0.79033 1.19544 1.19904 1.17946 1.19361 0.95829 0.91291 1.45405 0.90649 1.17573 0.94372 0.91601 0.92734 1.20948 0.98567 0.97059 1.01451 1.20594 1.00246 0.93266 1.02877 1.20552 0.98831 0.97036 1.05261 1.20666 0.98030 0.96130 1.04274 1.17979 0.90252 0.94364 0.98479 1.41237 1.25992 1.05184 1.57003 1.17295 1.02541 0.88215 0.91797 1.20726 1.01464 0.92724 0.99148 1.20447 1.08130 0.89235 0.92584 1.98322 1.97385 1.46925 1.62885 1.20913 0.99469 1.00174 0.90387 1.20629 1.05669 0.90613 1.01577 1.17966 0.97241 0.90160 0.87333 1.42353 1.71117 1.13267 1.13990 0.90714 0.87652 0.87869 0.86882 0.86732 0.76017 0.86590 0.82804 0.82086 0.77470 0.75781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.30 10.75 21.82 0.23 -43.06 16 2 C 0.03 1.65 5.25 85.23 0.45 2.10 16 3 Si 0.98 37.42 29.58 68.60 2.03 39.45 16 4 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.49 -24.79 8.44 23.35 0.20 -24.59 16 8 H 0.08 3.61 6.81 -2.91 -0.02 3.59 16 9 C 0.04 2.17 5.59 -21.16 -0.12 2.05 16 10 C -0.16 -8.46 8.62 22.46 0.19 -8.26 16 11 C -0.15 -7.18 9.96 22.01 0.22 -6.96 16 12 C -0.20 -8.83 10.03 22.40 0.22 -8.61 16 13 C -0.17 -7.61 8.05 22.38 0.18 -7.43 16 14 C 0.09 4.11 6.48 39.04 0.25 4.36 16 15 N -0.67 -26.56 4.89 -178.92 -0.87 -27.44 16 16 C 0.10 3.54 5.89 38.32 0.23 3.77 16 17 C -0.12 -4.01 7.13 22.41 0.16 -3.85 16 18 C -0.07 -2.15 6.32 22.32 0.14 -2.00 16 19 Cl -0.08 -2.24 28.95 -2.72 -0.08 -2.31 16 20 C -0.09 -2.07 9.82 22.31 0.22 -1.85 16 21 C -0.16 -3.56 9.89 22.38 0.22 -3.34 16 22 C 0.18 4.98 6.78 38.27 0.26 5.24 16 23 N -0.87 -19.76 9.08 -50.93 -0.46 -20.23 16 24 H 0.28 13.41 8.30 -92.71 -0.77 12.64 16 25 H 0.11 5.87 6.08 -2.91 -0.02 5.85 16 26 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 27 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 28 H 0.11 4.79 5.27 -2.91 -0.02 4.78 16 29 H 0.40 15.52 6.37 -92.71 -0.59 14.93 16 30 H 0.12 4.43 6.64 -2.91 -0.02 4.41 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.40 10.06 7.62 -92.71 -0.71 9.36 16 34 H 0.41 6.57 8.84 -92.71 -0.82 5.75 16 Total: -1.00 -58.23 300.97 2.74 -55.49 By element: Atomic # 1 Polarization: 48.41 SS G_CDS: -0.93 Total: 47.48 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 2.82 Total: -49.38 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -1.10 Total: -90.72 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.08 Total: -2.31 kcal Total: -58.23 2.74 -55.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212437401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.253 kcal (2) G-P(sol) polarization free energy of solvation -58.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds