Wall clock time and date at job start Tue Mar 31 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86802 * 119.99709 * 2 1 4 4 H 1.48500 * 109.46610 * 269.99268 * 3 2 1 5 5 H 1.48491 * 109.47333 * 29.99192 * 3 2 1 6 6 H 1.48504 * 109.47173 * 149.99698 * 3 2 1 7 7 C 1.39888 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99630 * 192.06464 * 7 2 1 9 9 C 1.40987 * 120.00027 * 12.07157 * 7 2 1 10 10 C 1.40749 * 120.31377 * 26.46074 * 9 7 2 11 11 C 1.36415 * 119.95244 * 179.70419 * 10 9 7 12 12 C 1.38940 * 120.61902 * 0.29560 * 11 10 9 13 13 C 1.38090 * 120.63646 * 359.97438 * 12 11 10 14 14 C 1.38847 * 120.01897 * 359.97438 * 13 12 11 15 15 N 1.38584 * 120.29760 * 180.02562 * 14 13 12 16 16 C 1.39835 * 120.00417 * 6.02587 * 15 14 13 17 17 C 1.38766 * 120.09319 * 42.46709 * 16 15 14 18 18 C 1.38202 * 120.00721 * 179.75073 * 17 16 15 19 19 C 1.38420 * 120.19325 * 0.54575 * 18 17 16 20 20 Cl 1.73599 * 119.90505 * 179.72405 * 19 18 17 21 21 C 1.38335 * 120.19033 * 359.70728 * 19 18 17 22 22 C 1.38682 * 119.99500 * 0.02562 * 21 19 18 23 23 N 1.39875 * 120.10258 * 180.02562 * 22 21 19 24 24 H 0.96996 * 120.00092 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.02087 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.68866 * 180.27726 * 11 10 9 27 27 H 1.08003 * 119.68236 * 179.97438 * 12 11 10 28 28 H 1.08007 * 119.99013 * 179.97438 * 13 12 11 29 29 H 0.97008 * 119.99379 * 186.02548 * 15 14 13 30 30 H 1.08002 * 120.00136 * 0.02562 * 17 16 15 31 31 H 1.07994 * 119.90845 * 180.25472 * 18 17 16 32 32 H 1.07997 * 120.00600 * 180.02562 * 21 19 18 33 33 H 0.97003 * 120.00100 * 179.97438 * 23 22 21 34 34 H 0.97000 * 120.00172 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4905 2.0463 -1.4001 5 1 1.4403 2.6527 0.6998 6 1 3.5405 1.4403 0.7001 7 6 2.0085 -1.2115 0.0005 8 1 3.0706 -1.2216 0.1961 9 6 1.3269 -2.4191 -0.2543 10 6 0.1500 -2.4214 -1.0261 11 6 -0.5002 -3.5949 -1.2732 12 6 -0.0153 -4.7933 -0.7642 13 6 1.1341 -4.8192 0.0007 14 6 1.8175 -3.6404 0.2677 15 7 2.9719 -3.6598 1.0342 16 6 3.5235 -4.8800 1.4370 17 6 3.5958 -5.9395 0.5437 18 6 4.1460 -7.1431 0.9421 19 6 4.6159 -7.2998 2.2346 20 17 5.2990 -8.8172 2.7291 21 6 4.5430 -6.2507 3.1333 22 6 3.9975 -5.0378 2.7403 23 7 3.9231 -3.9753 3.6470 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2357 -1.4953 -1.4261 26 1 -1.4006 -3.5923 -1.8697 27 1 -0.5424 -5.7135 -0.9688 28 1 1.5015 -5.7567 0.3915 29 1 3.3973 -2.8268 1.2914 30 1 3.2262 -5.8222 -0.4643 31 1 4.2052 -7.9652 0.2443 32 1 4.9109 -6.3761 4.1409 33 1 3.5416 -3.1274 3.3704 34 1 4.2531 -4.0863 4.5524 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213656599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:56 Heat of formation + Delta-G solvation = 42.931560 kcal Electronic energy + Delta-G solvation = -19675.871077 eV Core-core repulsion = 16598.649884 eV Total energy + Delta-G solvation = -3077.221192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73218 -37.75290 -36.37286 -34.36739 -34.16668 -33.59261 -30.16567 -29.11875 -28.67963 -27.13221 -25.20798 -22.46022 -22.04358 -20.73296 -20.01886 -17.50169 -17.21455 -16.97259 -16.19473 -15.94305 -14.94658 -14.63516 -14.18291 -14.15828 -13.59501 -13.47706 -12.94503 -12.69800 -12.46520 -12.09178 -11.85986 -11.69194 -11.43755 -11.35939 -11.15172 -11.01048 -10.70394 -10.53820 -10.19715 -9.77636 -9.62166 -9.54850 -9.26424 -8.22642 -7.44383 -7.40194 -6.78402 -6.27139 -4.30721 1.51571 1.77296 2.39335 2.74752 3.03027 3.04416 3.07333 3.16967 3.88147 4.00497 4.03318 4.29932 4.63594 5.11677 5.40576 5.59338 5.67490 5.78196 6.07430 6.17041 6.21431 6.40134 6.52576 6.54505 6.66067 6.89267 6.94503 7.09867 7.17274 7.37655 7.56947 7.65211 7.76635 7.93984 8.08539 8.10186 8.32385 8.56872 8.65170 8.84935 8.96267 10.18957 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.004513 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.206456 B = 6202.516693 C = 7182.882453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.071 0.929 9 C 0.077 3.923 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.199 4.199 13 C -0.159 4.159 14 C 0.078 3.922 15 N -0.669 5.669 16 C 0.134 3.866 17 C -0.108 4.108 18 C -0.139 4.139 19 C -0.027 4.027 20 Cl -0.092 7.092 21 C -0.171 4.171 22 C 0.184 3.816 23 N -0.875 5.875 24 H 0.279 0.721 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.402 0.598 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.401 0.599 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.986 -6.982 4.548 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.089 0.911 9 C 0.073 3.927 10 C -0.156 4.156 11 C -0.157 4.157 12 C -0.219 4.219 13 C -0.180 4.180 14 C -0.019 4.019 15 N -0.294 5.294 16 C 0.030 3.970 17 C -0.131 4.131 18 C -0.160 4.160 19 C -0.056 4.056 20 Cl -0.063 7.063 21 C -0.196 4.196 22 C 0.077 3.923 23 N -0.416 5.416 24 H 0.090 0.910 25 H 0.142 0.858 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.239 0.761 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.231 0.769 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.777 -7.023 4.535 10.762 hybrid contribution 0.430 1.258 0.481 1.414 sum 7.207 -5.764 5.016 10.504 Atomic orbital electron populations 1.69815 1.07293 1.28849 1.36810 1.25777 0.94766 1.00917 0.92636 0.86324 0.80185 0.80958 0.79257 1.19418 1.20406 1.18902 1.19158 0.95614 0.90718 1.44277 0.91090 1.17242 0.93616 0.90258 0.91601 1.20970 0.97471 0.97001 1.00127 1.20403 0.99539 0.93453 1.02258 1.20221 0.98939 0.96453 1.06323 1.20465 0.97886 0.95759 1.03928 1.17848 0.89592 0.94907 0.99511 1.41411 1.26665 1.04264 1.57014 1.17377 0.99855 0.89200 0.90531 1.20933 1.00201 0.92519 0.99435 1.20580 1.02616 0.98281 0.94500 1.20309 1.03581 0.86728 0.94967 1.98320 1.84068 1.32076 1.91847 1.20052 1.08086 0.91495 0.99955 1.17505 0.98259 0.88458 0.88105 1.42291 1.71918 1.13945 1.13467 0.91031 0.85808 0.89568 0.89366 0.87955 0.76060 0.84428 0.85686 0.85722 0.76925 0.77696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.92 10.75 55.55 0.60 -19.33 16 2 C 0.08 1.79 5.24 -17.33 -0.09 1.70 16 3 Si 0.91 17.92 29.58 -169.99 -5.03 12.89 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.47 -11.42 8.45 -37.92 -0.32 -11.74 16 8 H 0.07 1.64 6.80 -52.48 -0.36 1.29 16 9 C 0.08 1.92 5.59 -106.63 -0.60 1.33 16 10 C -0.14 -3.40 8.62 -39.29 -0.34 -3.73 16 11 C -0.14 -3.15 9.96 -39.98 -0.40 -3.55 16 12 C -0.20 -4.37 10.03 -39.38 -0.40 -4.77 16 13 C -0.16 -3.46 8.05 -39.41 -0.32 -3.78 16 14 C 0.08 1.77 6.48 -83.31 -0.54 1.23 16 15 N -0.67 -12.98 4.89 -7.90 -0.04 -13.01 16 16 C 0.13 2.32 5.89 -83.51 -0.49 1.83 16 17 C -0.11 -1.79 7.35 -39.40 -0.29 -2.08 16 18 C -0.14 -2.03 9.82 -39.53 -0.39 -2.42 16 19 C -0.03 -0.39 6.32 -39.48 -0.25 -0.64 16 20 Cl -0.09 -1.16 28.95 -51.86 -1.50 -2.66 16 21 C -0.17 -2.39 9.67 -39.38 -0.38 -2.78 16 22 C 0.18 2.79 6.78 -83.52 -0.57 2.22 16 23 N -0.88 -11.21 9.08 32.54 0.30 -10.92 16 24 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 25 H 0.12 3.23 6.08 -52.49 -0.32 2.91 16 26 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 27 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.10 2.07 5.27 -52.48 -0.28 1.79 16 29 H 0.40 7.57 6.36 -40.82 -0.26 7.31 16 30 H 0.14 2.37 6.64 -52.49 -0.35 2.02 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.40 5.38 7.62 -40.82 -0.31 5.07 16 34 H 0.40 3.96 8.84 -40.82 -0.36 3.60 16 LS Contribution 300.96 15.07 4.54 4.54 Total: -1.00 -25.88 300.96 -9.56 -35.44 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -3.06 Total: 20.23 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -5.36 Total: -27.18 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.85 Total: -43.26 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.88 -9.56 -35.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213656599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.373 kcal (2) G-P(sol) polarization free energy of solvation -25.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds