Wall clock time and date at job start Tue Mar 31 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86802 * 119.99709 * 2 1 4 4 H 1.48500 * 109.46610 * 269.99268 * 3 2 1 5 5 H 1.48491 * 109.47333 * 29.99192 * 3 2 1 6 6 H 1.48504 * 109.47173 * 149.99698 * 3 2 1 7 7 C 1.39888 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99630 * 192.06464 * 7 2 1 9 9 C 1.40987 * 120.00027 * 12.07157 * 7 2 1 10 10 C 1.40749 * 120.31377 * 26.46074 * 9 7 2 11 11 C 1.36415 * 119.95244 * 179.70419 * 10 9 7 12 12 C 1.38940 * 120.61902 * 0.29560 * 11 10 9 13 13 C 1.38090 * 120.63646 * 359.97438 * 12 11 10 14 14 C 1.38847 * 120.01897 * 359.97438 * 13 12 11 15 15 N 1.38584 * 120.29760 * 180.02562 * 14 13 12 16 16 C 1.39835 * 120.00417 * 6.02587 * 15 14 13 17 17 C 1.38766 * 120.09319 * 42.46709 * 16 15 14 18 18 C 1.38202 * 120.00721 * 179.75073 * 17 16 15 19 19 C 1.38420 * 120.19325 * 0.54575 * 18 17 16 20 20 Cl 1.73599 * 119.90505 * 179.72405 * 19 18 17 21 21 C 1.38335 * 120.19033 * 359.70728 * 19 18 17 22 22 C 1.38682 * 119.99500 * 0.02562 * 21 19 18 23 23 N 1.39875 * 120.10258 * 180.02562 * 22 21 19 24 24 H 0.96996 * 120.00092 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.02087 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.68866 * 180.27726 * 11 10 9 27 27 H 1.08003 * 119.68236 * 179.97438 * 12 11 10 28 28 H 1.08007 * 119.99013 * 179.97438 * 13 12 11 29 29 H 0.97008 * 119.99379 * 186.02548 * 15 14 13 30 30 H 1.08002 * 120.00136 * 0.02562 * 17 16 15 31 31 H 1.07994 * 119.90845 * 180.25472 * 18 17 16 32 32 H 1.07997 * 120.00600 * 180.02562 * 21 19 18 33 33 H 0.97003 * 120.00100 * 179.97438 * 23 22 21 34 34 H 0.97000 * 120.00172 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4905 2.0463 -1.4001 5 1 1.4403 2.6527 0.6998 6 1 3.5405 1.4403 0.7001 7 6 2.0085 -1.2115 0.0005 8 1 3.0706 -1.2216 0.1961 9 6 1.3269 -2.4191 -0.2543 10 6 0.1500 -2.4214 -1.0261 11 6 -0.5002 -3.5949 -1.2732 12 6 -0.0153 -4.7933 -0.7642 13 6 1.1341 -4.8192 0.0007 14 6 1.8175 -3.6404 0.2677 15 7 2.9719 -3.6598 1.0342 16 6 3.5235 -4.8800 1.4370 17 6 3.5958 -5.9395 0.5437 18 6 4.1460 -7.1431 0.9421 19 6 4.6159 -7.2998 2.2346 20 17 5.2990 -8.8172 2.7291 21 6 4.5430 -6.2507 3.1333 22 6 3.9975 -5.0378 2.7403 23 7 3.9231 -3.9753 3.6470 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2357 -1.4953 -1.4261 26 1 -1.4006 -3.5923 -1.8697 27 1 -0.5424 -5.7135 -0.9688 28 1 1.5015 -5.7567 0.3915 29 1 3.3973 -2.8268 1.2914 30 1 3.2262 -5.8222 -0.4643 31 1 4.2052 -7.9652 0.2443 32 1 4.9109 -6.3761 4.1409 33 1 3.5416 -3.1274 3.3704 34 1 4.2531 -4.0863 4.5524 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213656599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:55 Heat of formation + Delta-G solvation = 30.130525 kcal Electronic energy + Delta-G solvation = -19676.426171 eV Core-core repulsion = 16598.649884 eV Total energy + Delta-G solvation = -3077.776287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06392 -39.33267 -37.50864 -35.84927 -35.48476 -35.17061 -31.78710 -30.61613 -30.07676 -28.54303 -26.97785 -23.75504 -23.48860 -22.31961 -21.60298 -19.14562 -18.63943 -18.21341 -17.67981 -17.29063 -16.58794 -15.96739 -15.66711 -15.36504 -14.96762 -14.79009 -14.52187 -14.34258 -13.99346 -13.70210 -13.21489 -13.01613 -12.95982 -12.77124 -12.69929 -12.52169 -12.13418 -11.80165 -11.48323 -11.44743 -11.34942 -11.04387 -11.00819 -9.54187 -9.25944 -8.73417 -8.50332 -7.81264 -6.12541 0.27214 0.58782 1.03649 1.27053 1.32099 1.40993 1.51582 1.54283 2.23345 2.68339 2.78509 2.89000 3.08751 3.80646 3.94647 4.30155 4.44224 4.48663 4.59542 4.66149 4.79200 4.93455 5.00821 5.11918 5.31976 5.34237 5.41610 5.48743 5.60219 5.75347 5.88923 5.97416 6.27522 6.32775 6.45338 6.60896 6.86429 6.94805 6.97284 7.16350 7.20923 8.44821 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.004513 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.206456 B = 6202.516693 C = 7182.882453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.034 3.966 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.160 4.160 11 C -0.151 4.151 12 C -0.196 4.196 13 C -0.169 4.169 14 C 0.086 3.914 15 N -0.670 5.670 16 C 0.100 3.900 17 C -0.112 4.112 18 C -0.142 4.142 19 C -0.022 4.022 20 Cl -0.072 7.072 21 C -0.170 4.170 22 C 0.187 3.813 23 N -0.867 5.867 24 H 0.282 0.718 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.402 0.598 30 H 0.126 0.874 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.399 0.601 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -8.298 5.831 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.520 4.520 8 H 0.094 0.906 9 C 0.038 3.962 10 C -0.181 4.181 11 C -0.170 4.170 12 C -0.216 4.216 13 C -0.191 4.191 14 C -0.012 4.012 15 N -0.294 5.294 16 C -0.001 4.001 17 C -0.134 4.134 18 C -0.163 4.163 19 C -0.051 4.051 20 Cl -0.043 7.043 21 C -0.194 4.194 22 C 0.079 3.921 23 N -0.408 5.408 24 H 0.093 0.907 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.239 0.761 30 H 0.144 0.856 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.228 0.772 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.277 -8.378 5.862 13.155 hybrid contribution 0.059 1.432 0.163 1.442 sum 8.336 -6.946 6.024 12.411 Atomic orbital electron populations 1.69903 1.08734 1.29759 1.38030 1.26564 0.95416 1.03951 0.91917 0.85269 0.79067 0.76695 0.79047 1.19495 1.19982 1.17985 1.19375 0.95899 0.91368 1.45343 0.90645 1.17555 0.94335 0.91575 0.92752 1.20947 0.98606 0.97085 1.01457 1.20603 1.00228 0.93319 1.02899 1.20568 0.98803 0.97018 1.05177 1.20702 0.97959 0.96230 1.04163 1.17989 0.90227 0.94420 0.98539 1.41283 1.25986 1.05225 1.56890 1.17593 1.01941 0.88706 0.91860 1.20910 1.00455 0.93102 0.98925 1.20731 1.02281 0.98065 0.95217 1.20478 1.02311 0.87523 0.94765 1.98335 1.83632 1.30753 1.91625 1.20313 1.07322 0.90733 1.01032 1.17594 0.97493 0.89360 0.87640 1.42291 1.71324 1.13255 1.13922 0.90739 0.87769 0.87934 0.86666 0.86252 0.76148 0.85627 0.83908 0.83317 0.77226 0.75950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.08 10.75 21.82 0.23 -42.85 16 2 C 0.03 1.67 5.24 85.23 0.45 2.11 16 3 Si 0.98 37.24 29.58 68.60 2.03 39.27 16 4 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.49 -24.61 8.45 23.34 0.20 -24.41 16 8 H 0.08 3.57 6.80 -2.91 -0.02 3.55 16 9 C 0.04 2.17 5.59 -21.16 -0.12 2.05 16 10 C -0.16 -8.36 8.62 22.46 0.19 -8.17 16 11 C -0.15 -7.05 9.96 22.01 0.22 -6.83 16 12 C -0.20 -8.47 10.03 22.40 0.22 -8.24 16 13 C -0.17 -7.30 8.05 22.38 0.18 -7.12 16 14 C 0.09 3.96 6.48 39.05 0.25 4.21 16 15 N -0.67 -26.00 4.89 -178.89 -0.87 -26.88 16 16 C 0.10 3.39 5.89 38.31 0.23 3.61 16 17 C -0.11 -3.56 7.35 22.39 0.16 -3.39 16 18 C -0.14 -3.83 9.82 22.30 0.22 -3.61 16 19 C -0.02 -0.57 6.32 22.34 0.14 -0.43 16 20 Cl -0.07 -1.59 28.95 -2.72 -0.08 -1.67 16 21 C -0.17 -4.23 9.67 22.40 0.22 -4.01 16 22 C 0.19 5.31 6.78 38.29 0.26 5.57 16 23 N -0.87 -20.59 9.08 -50.97 -0.46 -21.05 16 24 H 0.28 13.35 8.30 -92.71 -0.77 12.58 16 25 H 0.10 5.74 6.08 -2.91 -0.02 5.72 16 26 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 27 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.12 4.69 5.27 -2.91 -0.02 4.67 16 29 H 0.40 15.28 6.36 -92.70 -0.59 14.69 16 30 H 0.13 4.28 6.64 -2.91 -0.02 4.26 16 31 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.40 10.27 7.62 -92.71 -0.71 9.56 16 34 H 0.41 7.17 8.84 -92.71 -0.82 6.35 16 Total: -1.00 -56.02 300.96 2.74 -53.28 By element: Atomic # 1 Polarization: 49.47 SS G_CDS: -0.93 Total: 48.54 kcal Atomic # 6 Polarization: -51.47 SS G_CDS: 2.82 Total: -48.65 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -1.10 Total: -90.77 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -56.02 2.74 -53.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213656599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.408 kcal (2) G-P(sol) polarization free energy of solvation -56.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds