Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38497 * 120.81176 * 2 1 4 4 C 1.38382 * 119.23160 * 180.27008 * 3 2 1 5 5 Cl 1.73598 * 119.55040 * 179.72576 * 4 3 2 6 6 N 1.31968 * 120.89792 * 359.74667 * 4 3 2 7 7 C 1.31822 * 121.78314 * 0.02562 * 6 4 3 8 8 C 1.38886 * 120.67088 * 0.02562 * 7 6 4 9 9 N 1.39813 * 120.47929 * 179.97438 * 8 7 6 10 10 C 1.39710 * 120.00027 * 255.66773 * 9 8 7 11 11 C 1.39357 * 119.95322 * 5.93591 * 10 9 8 12 12 C 1.38475 * 120.42181 * 179.97438 * 11 10 9 13 13 C 1.37690 * 120.32714 * 0.04900 * 12 11 10 14 14 C 1.40753 * 119.89722 * 359.93018 * 13 12 11 15 15 C 1.41411 * 120.20787 * 180.31897 * 14 13 12 16 16 H 1.07998 * 119.99808 * 151.94690 * 15 14 13 17 17 C 1.39925 * 119.99795 * 331.94416 * 15 14 13 18 18 N 1.30831 * 120.00156 * 348.26565 * 17 15 14 19 19 Si 1.86802 * 119.99797 * 168.26447 * 17 15 14 20 20 H 1.48498 * 109.47013 * 60.00415 * 19 17 15 21 21 H 1.48506 * 109.47173 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47490 * 299.99965 * 19 17 15 23 23 C 1.38292 * 119.95367 * 185.91994 * 10 9 8 24 24 H 1.08993 * 109.47709 * 270.22415 * 1 2 3 25 25 H 1.08996 * 109.47413 * 30.22874 * 1 2 3 26 26 H 1.09006 * 109.46645 * 150.22664 * 1 2 3 27 27 H 1.08002 * 120.38231 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.66393 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99848 * 75.65765 * 9 8 7 30 30 H 1.08003 * 119.78814 * 0.02562 * 11 10 9 31 31 H 1.07994 * 119.83246 * 180.02562 * 12 11 10 32 32 H 1.08003 * 120.05198 * 179.97438 * 13 12 11 33 33 H 0.97005 * 119.99824 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.16343 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.1895 0.0000 4 6 3.5997 1.1513 -0.0057 5 17 4.4971 2.6373 -0.0130 6 7 4.2459 0.0007 -0.0061 7 6 3.6088 -1.1534 -0.0016 8 6 2.2207 -1.1963 0.0032 9 7 1.5491 -2.4226 0.0074 10 6 0.9469 -2.8933 -1.1621 11 6 1.1202 -2.2031 -2.3603 12 6 0.5282 -2.6612 -3.5253 13 6 -0.2396 -3.8041 -3.5121 14 6 -0.4233 -4.5121 -2.3096 15 6 -1.2050 -5.6903 -2.2899 16 1 -1.0037 -6.4597 -1.5592 17 6 -2.2393 -5.8593 -3.2171 18 7 -2.6355 -4.8481 -3.9466 19 14 -3.0543 -7.5286 -3.4132 20 1 -3.6605 -7.9383 -2.1209 21 1 -4.1122 -7.4440 -4.4520 22 1 -2.0380 -8.5307 -3.8230 23 6 0.1799 -4.0435 -1.1291 24 1 -0.3634 0.0040 1.0275 25 1 -0.3634 0.8879 -0.5173 26 1 -0.3633 -0.8921 -0.5103 27 1 1.6960 2.1359 0.0004 28 1 4.1722 -2.0749 -0.0025 29 1 1.5014 -2.9466 0.8222 30 1 1.7207 -1.3057 -2.3806 31 1 0.6691 -2.1191 -4.4487 32 1 -0.6996 -4.1572 -4.4233 33 1 -3.3522 -4.9654 -4.5897 34 1 0.0447 -4.5792 -0.2011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216280717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = 45.912650 kcal Electronic energy + Delta-G solvation = -19391.117210 eV Core-core repulsion = 16314.025287 eV Total energy + Delta-G solvation = -3077.091923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49831 -37.95055 -36.69728 -35.35058 -33.62363 -33.06383 -30.20262 -29.76016 -28.20379 -26.81378 -25.28480 -23.24085 -22.08564 -20.95840 -20.33229 -17.59085 -17.03628 -16.78033 -16.48779 -15.63170 -15.05976 -14.54077 -14.35131 -14.25993 -13.31606 -13.07500 -12.89979 -12.81700 -12.76398 -12.23971 -11.92064 -11.69631 -11.61199 -11.39272 -11.31620 -11.15412 -10.80813 -10.55575 -10.00020 -9.94996 -9.51621 -9.41456 -9.32383 -9.04646 -8.63424 -7.48671 -6.76124 -6.48589 -4.42326 0.90636 1.15662 1.78423 2.78608 3.05083 3.07076 3.08336 3.22811 3.58734 3.85992 3.94006 4.47691 4.64196 4.74464 4.91757 5.08647 5.43093 5.60245 5.69294 5.72209 5.87146 5.98672 6.22777 6.38716 6.40781 6.45284 6.89902 6.93893 7.02851 7.16806 7.24571 7.60936 7.71882 7.78037 8.02528 8.11675 8.33369 8.39095 8.65710 8.89188 8.97049 10.20396 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.041987 B = 0.003323 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.717579 B = 8424.347133 C = 8509.482754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 C -0.150 4.150 4 C 0.163 3.837 5 Cl -0.043 7.043 6 N -0.477 5.477 7 C 0.110 3.890 8 C 0.133 3.867 9 N -0.711 5.711 10 C 0.212 3.788 11 C -0.285 4.285 12 C -0.078 4.078 13 C -0.186 4.186 14 C 0.139 3.861 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.274 4.274 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.142 0.858 28 H 0.165 0.835 29 H 0.402 0.598 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.280 0.720 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 8.679 6.625 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.043 4.043 3 C -0.171 4.171 4 C -0.001 4.001 5 Cl -0.014 7.014 6 N -0.188 5.188 7 C -0.050 4.050 8 C 0.036 3.964 9 N -0.343 5.343 10 C 0.117 3.883 11 C -0.308 4.308 12 C -0.097 4.097 13 C -0.206 4.206 14 C 0.136 3.864 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.423 5.423 19 Si 0.734 3.266 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.298 4.298 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.160 0.840 28 H 0.182 0.818 29 H 0.239 0.761 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.385 8.993 6.347 12.725 hybrid contribution -1.177 -0.674 0.142 1.363 sum 5.209 8.319 6.489 11.766 Atomic orbital electron populations 1.20839 0.89068 1.04758 1.02735 1.20808 0.97813 0.91702 0.93956 1.21641 0.92175 0.99511 1.03798 1.21498 0.88696 0.88361 1.01542 1.98382 1.76771 1.29608 1.96680 1.66946 1.41063 0.97289 1.13497 1.23099 0.91490 0.94818 0.95548 1.18409 0.91282 0.87150 0.99555 1.41758 1.61622 1.19263 1.11690 1.17404 0.93006 0.93620 0.84275 1.19873 1.13846 1.04416 0.92654 1.20468 0.97140 0.96526 0.95550 1.21293 1.02827 0.97614 0.98843 1.17346 0.88012 0.91281 0.89736 1.19524 1.12948 1.02896 1.13987 0.90613 1.25880 0.96449 0.97886 0.93968 1.69807 1.23243 1.30842 1.18437 0.86348 0.79000 0.82383 0.78835 1.19086 1.20373 1.18896 1.20469 1.11217 0.99998 0.98099 0.90695 0.91210 0.88842 0.83984 0.81810 0.76095 0.89975 0.89463 0.86364 0.90929 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 9.83 36.01 0.35 -1.23 16 2 C -0.03 -0.46 5.48 -104.13 -0.57 -1.03 16 3 C -0.15 -1.93 9.57 -39.43 -0.38 -2.30 16 4 C 0.16 2.27 7.27 -17.44 -0.13 2.14 16 5 Cl -0.04 -0.52 29.10 -51.86 -1.51 -2.03 16 6 N -0.48 -7.20 10.33 -10.19 -0.11 -7.30 16 7 C 0.11 1.60 11.13 -17.32 -0.19 1.41 16 8 C 0.13 2.01 4.55 -83.58 -0.38 1.63 16 9 N -0.71 -11.52 4.92 -8.35 -0.04 -11.56 16 10 C 0.21 4.33 5.22 -83.83 -0.44 3.90 16 11 C -0.29 -6.14 8.79 -39.08 -0.34 -6.48 16 12 C -0.08 -1.79 10.01 -39.69 -0.40 -2.18 16 13 C -0.19 -4.69 8.67 -38.83 -0.34 -5.03 16 14 C 0.14 3.56 5.55 -106.85 -0.59 2.97 16 15 C -0.46 -11.91 9.06 -37.74 -0.34 -12.25 16 16 H 0.08 1.87 7.87 -52.49 -0.41 1.45 16 17 C 0.08 1.85 5.24 -17.35 -0.09 1.75 16 18 N -0.80 -20.18 10.84 55.55 0.60 -19.57 16 19 Si 0.91 18.29 29.58 -169.99 -5.03 13.27 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.27 -6.27 9.64 -38.67 -0.37 -6.64 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.83 8.10 -51.93 -0.42 0.40 16 26 H 0.09 1.57 5.91 -51.93 -0.31 1.26 16 27 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 28 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.40 5.71 8.83 -40.82 -0.36 5.35 16 30 H 0.08 1.71 6.75 -52.48 -0.35 1.35 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.12 3.12 6.18 -52.48 -0.32 2.80 16 33 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 34 H 0.09 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -26.74 308.42 -9.07 -35.81 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.43 Total: 10.11 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -4.21 Total: -23.36 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.46 Total: -38.44 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.74 -9.07 -35.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216280717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.721 kcal (2) G-P(sol) polarization free energy of solvation -26.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds