Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38497 * 120.81176 * 2 1 4 4 C 1.38382 * 119.23160 * 180.27008 * 3 2 1 5 5 Cl 1.73598 * 119.55040 * 179.72576 * 4 3 2 6 6 N 1.31968 * 120.89792 * 359.74667 * 4 3 2 7 7 C 1.31822 * 121.78314 * 0.02562 * 6 4 3 8 8 C 1.38886 * 120.67088 * 0.02562 * 7 6 4 9 9 N 1.39813 * 120.47929 * 179.97438 * 8 7 6 10 10 C 1.39710 * 120.00027 * 255.66773 * 9 8 7 11 11 C 1.39357 * 119.95322 * 5.93591 * 10 9 8 12 12 C 1.38475 * 120.42181 * 179.97438 * 11 10 9 13 13 C 1.37690 * 120.32714 * 0.04900 * 12 11 10 14 14 C 1.40753 * 119.89722 * 359.93018 * 13 12 11 15 15 C 1.41411 * 120.20787 * 180.31897 * 14 13 12 16 16 H 1.07998 * 119.99808 * 151.94690 * 15 14 13 17 17 C 1.39925 * 119.99795 * 331.94416 * 15 14 13 18 18 N 1.30831 * 120.00156 * 348.26565 * 17 15 14 19 19 Si 1.86802 * 119.99797 * 168.26447 * 17 15 14 20 20 H 1.48498 * 109.47013 * 60.00415 * 19 17 15 21 21 H 1.48506 * 109.47173 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47490 * 299.99965 * 19 17 15 23 23 C 1.38292 * 119.95367 * 185.91994 * 10 9 8 24 24 H 1.08993 * 109.47709 * 270.22415 * 1 2 3 25 25 H 1.08996 * 109.47413 * 30.22874 * 1 2 3 26 26 H 1.09006 * 109.46645 * 150.22664 * 1 2 3 27 27 H 1.08002 * 120.38231 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.66393 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99848 * 75.65765 * 9 8 7 30 30 H 1.08003 * 119.78814 * 0.02562 * 11 10 9 31 31 H 1.07994 * 119.83246 * 180.02562 * 12 11 10 32 32 H 1.08003 * 120.05198 * 179.97438 * 13 12 11 33 33 H 0.97005 * 119.99824 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.16343 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.1895 0.0000 4 6 3.5997 1.1513 -0.0057 5 17 4.4971 2.6373 -0.0130 6 7 4.2459 0.0007 -0.0061 7 6 3.6088 -1.1534 -0.0016 8 6 2.2207 -1.1963 0.0032 9 7 1.5491 -2.4226 0.0074 10 6 0.9469 -2.8933 -1.1621 11 6 1.1202 -2.2031 -2.3603 12 6 0.5282 -2.6612 -3.5253 13 6 -0.2396 -3.8041 -3.5121 14 6 -0.4233 -4.5121 -2.3096 15 6 -1.2050 -5.6903 -2.2899 16 1 -1.0037 -6.4597 -1.5592 17 6 -2.2393 -5.8593 -3.2171 18 7 -2.6355 -4.8481 -3.9466 19 14 -3.0543 -7.5286 -3.4132 20 1 -3.6605 -7.9383 -2.1209 21 1 -4.1122 -7.4440 -4.4520 22 1 -2.0380 -8.5307 -3.8230 23 6 0.1799 -4.0435 -1.1291 24 1 -0.3634 0.0040 1.0275 25 1 -0.3634 0.8879 -0.5173 26 1 -0.3633 -0.8921 -0.5103 27 1 1.6960 2.1359 0.0004 28 1 4.1722 -2.0749 -0.0025 29 1 1.5014 -2.9466 0.8222 30 1 1.7207 -1.3057 -2.3806 31 1 0.6691 -2.1191 -4.4487 32 1 -0.6996 -4.1572 -4.4233 33 1 -3.3522 -4.9654 -4.5897 34 1 0.0447 -4.5792 -0.2011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216280717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = 32.765455 kcal Electronic energy + Delta-G solvation = -19391.687315 eV Core-core repulsion = 16314.025287 eV Total energy + Delta-G solvation = -3077.662028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66074 -39.56754 -37.79327 -36.80618 -35.13555 -34.44358 -31.75962 -31.37877 -29.47345 -28.18039 -27.13189 -24.43479 -23.27581 -22.71945 -21.97523 -19.30475 -18.23972 -17.95577 -17.66778 -17.37459 -16.65715 -16.29563 -15.53289 -15.38425 -14.83552 -14.61703 -14.24076 -14.02273 -13.99762 -13.88094 -13.51908 -13.10429 -12.86758 -12.73950 -12.62915 -12.59457 -12.35205 -12.16487 -11.76507 -11.41465 -11.24322 -10.97265 -10.59184 -10.44499 -9.85716 -9.33206 -8.56828 -8.12263 -6.34129 -0.21465 0.06089 0.74330 1.03335 1.28924 1.41392 1.52138 1.58296 2.23827 2.42217 2.60483 2.82367 3.41142 3.64740 3.79734 3.85010 4.03936 4.33403 4.44963 4.60358 4.64143 4.70302 4.76801 4.93138 5.11554 5.16128 5.19826 5.27906 5.35952 5.39701 5.54996 5.90699 5.98655 6.17739 6.28164 6.55430 6.62857 6.84268 6.94434 7.01572 7.15573 8.40675 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.041987 B = 0.003323 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.717579 B = 8424.347133 C = 8509.482754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.035 4.035 3 C -0.142 4.142 4 C 0.157 3.843 5 Cl -0.027 7.027 6 N -0.493 5.493 7 C 0.110 3.890 8 C 0.112 3.888 9 N -0.697 5.697 10 C 0.234 3.766 11 C -0.283 4.283 12 C -0.079 4.079 13 C -0.216 4.216 14 C 0.113 3.887 15 C -0.500 4.500 16 H 0.075 0.925 17 C 0.034 3.966 18 N -0.829 5.829 19 Si 0.981 3.019 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.289 4.289 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.413 0.587 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.285 0.715 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 9.753 7.557 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.045 4.045 3 C -0.163 4.163 4 C -0.007 4.007 5 Cl 0.002 6.998 6 N -0.205 5.205 7 C -0.049 4.049 8 C 0.016 3.984 9 N -0.329 5.329 10 C 0.136 3.864 11 C -0.306 4.306 12 C -0.098 4.098 13 C -0.237 4.237 14 C 0.110 3.890 15 C -0.530 4.530 16 H 0.093 0.907 17 C -0.180 4.180 18 N -0.455 5.455 19 Si 0.802 3.198 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.186 1.186 23 C -0.313 4.313 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.188 0.812 28 H 0.192 0.808 29 H 0.251 0.749 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.809 10.096 7.316 14.206 hybrid contribution -1.162 -0.793 -0.064 1.408 sum 5.648 9.303 7.252 13.078 Atomic orbital electron populations 1.20810 0.88634 1.03892 1.03715 1.20926 0.98165 0.91805 0.93576 1.21868 0.91800 1.00189 1.02431 1.21801 0.89434 0.88647 1.00805 1.98390 1.76502 1.28391 1.96529 1.66996 1.41515 0.97754 1.14230 1.23210 0.91313 0.95294 0.95057 1.18509 0.91588 0.86789 1.01533 1.41570 1.60688 1.19879 1.10743 1.17302 0.91385 0.92249 0.85444 1.19986 1.13445 1.04655 0.92472 1.20681 0.96382 0.95828 0.96925 1.21181 1.04923 0.99305 0.98280 1.17676 0.88760 0.91847 0.90731 1.19798 1.14260 1.03547 1.15355 0.90661 1.26705 0.96617 1.01472 0.93174 1.69884 1.23870 1.32767 1.19024 0.85272 0.78004 0.77477 0.79055 1.18410 1.19450 1.18635 1.20573 1.11882 1.01090 0.97710 0.88861 0.89385 0.92258 0.81151 0.80790 0.74879 0.88754 0.87874 0.88399 0.90419 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 9.83 71.24 0.70 -2.12 16 2 C -0.03 -0.90 5.48 -19.55 -0.11 -1.01 16 3 C -0.14 -3.20 9.57 22.37 0.21 -2.99 16 4 C 0.16 3.95 7.27 84.71 0.62 4.56 16 5 Cl -0.03 -0.57 29.10 -2.72 -0.08 -0.65 16 6 N -0.49 -13.85 10.33 -186.16 -1.92 -15.78 16 7 C 0.11 3.00 11.13 84.85 0.94 3.95 16 8 C 0.11 3.16 4.55 38.28 0.17 3.34 16 9 N -0.70 -21.63 4.92 -180.33 -0.89 -22.51 16 10 C 0.23 9.43 5.22 38.17 0.20 9.63 16 11 C -0.28 -11.97 8.79 22.60 0.20 -11.77 16 12 C -0.08 -3.67 10.01 22.20 0.22 -3.45 16 13 C -0.22 -11.33 8.67 22.76 0.20 -11.13 16 14 C 0.11 5.95 5.55 -21.31 -0.12 5.83 16 15 C -0.50 -26.50 9.06 23.46 0.21 -26.29 16 16 H 0.08 3.83 7.87 -2.91 -0.02 3.80 16 17 C 0.03 1.72 5.24 85.25 0.45 2.17 16 18 N -0.83 -43.20 10.84 21.82 0.24 -42.96 16 19 Si 0.98 37.91 29.58 68.60 2.03 39.94 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 23 C -0.29 -13.36 9.64 22.86 0.22 -13.14 16 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.09 1.83 8.10 -2.39 -0.02 1.81 16 26 H 0.06 1.91 5.91 -2.38 -0.01 1.90 16 27 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.18 4.24 8.06 -2.91 -0.02 4.22 16 29 H 0.41 11.12 8.83 -92.71 -0.82 10.30 16 30 H 0.09 3.75 6.75 -2.91 -0.02 3.73 16 31 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.10 5.43 6.18 -2.91 -0.02 5.42 16 33 H 0.29 13.54 8.30 -92.70 -0.77 12.77 16 34 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -58.30 308.42 3.82 -54.48 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.33 Total: 29.89 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 4.12 Total: -42.40 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.57 Total: -81.25 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -58.30 3.82 -54.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216280717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.248 kcal (2) G-P(sol) polarization free energy of solvation -58.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds