Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86805 * 119.99735 * 2 1 4 4 H 1.48494 * 109.47256 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.47071 * 30.00156 * 3 2 1 6 6 H 1.48496 * 109.47136 * 149.99992 * 3 2 1 7 7 C 1.39888 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00043 * 191.35524 * 7 2 1 9 9 C 1.40997 * 120.00160 * 11.35885 * 7 2 1 10 10 C 1.40748 * 120.30965 * 30.20243 * 9 7 2 11 11 C 1.36421 * 119.95532 * 180.30315 * 10 9 7 12 12 C 1.38947 * 120.60716 * 359.69558 * 11 10 9 13 13 C 1.38088 * 120.64111 * 0.02562 * 12 11 10 14 14 C 1.38843 * 120.02172 * 0.02562 * 13 12 11 15 15 N 1.38595 * 120.30457 * 179.97438 * 14 13 12 16 16 C 1.39812 * 119.99645 * 260.31712 * 15 14 13 17 17 C 1.38804 * 120.10227 * 2.59401 * 16 15 14 18 18 C 1.38190 * 120.01187 * 179.72041 * 17 16 15 19 19 C 1.38315 * 120.21274 * 0.55045 * 18 17 16 20 20 C 1.38329 * 120.20470 * 359.72126 * 19 18 17 21 21 Cl 1.73599 * 120.00826 * 179.97438 * 20 19 18 22 22 C 1.38779 * 119.98216 * 0.02562 * 20 19 18 23 23 N 1.39979 * 120.10707 * 179.97438 * 22 20 19 24 24 H 0.96998 * 120.00446 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.02317 * 359.97438 * 10 9 7 26 26 H 1.07991 * 119.69422 * 179.72092 * 11 10 9 27 27 H 1.08002 * 119.67535 * 180.02562 * 12 11 10 28 28 H 1.08001 * 119.98825 * 179.97438 * 13 12 11 29 29 H 0.96994 * 119.99870 * 80.04218 * 15 14 13 30 30 H 1.08005 * 119.99130 * 359.97438 * 17 16 15 31 31 H 1.07998 * 119.88967 * 180.27659 * 18 17 16 32 32 H 1.08000 * 119.89569 * 179.74409 * 19 18 17 33 33 H 0.96998 * 119.99547 * 180.02562 * 23 22 20 34 34 H 0.96994 * 119.99964 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0466 -1.4000 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4403 0.7000 7 6 2.0085 -1.2114 -0.0005 8 1 3.0726 -1.2206 0.1836 9 6 1.3243 -2.4205 -0.2416 10 6 0.1833 -2.4389 -1.0654 11 6 -0.4768 -3.6118 -1.2888 12 6 -0.0299 -4.7955 -0.7146 13 6 1.0901 -4.8070 0.0932 14 6 1.7814 -3.6282 0.3390 15 7 2.9058 -3.6329 1.1492 16 6 2.8069 -3.2309 2.4846 17 6 1.5740 -2.8781 3.0159 18 6 1.4775 -2.4865 4.3376 19 6 2.6083 -2.4336 5.1323 20 6 3.8423 -2.7779 4.6104 21 17 5.2584 -2.7090 5.6122 22 6 3.9480 -3.1773 3.2856 23 7 5.1955 -3.5257 2.7547 24 1 -0.4851 0.8400 0.0004 25 1 -0.1726 -1.5243 -1.5162 26 1 -1.3544 -3.6203 -1.9180 27 1 -0.5637 -5.7155 -0.9018 28 1 1.4279 -5.7330 0.5344 29 1 3.7606 -3.9189 0.7908 30 1 0.6894 -2.9136 2.3972 31 1 0.5165 -2.2167 4.7502 32 1 2.5276 -2.1229 6.1634 33 1 5.2676 -3.8043 1.8284 34 1 5.9877 -3.4886 3.3131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216527344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = 42.972614 kcal Electronic energy + Delta-G solvation = -20141.425198 eV Core-core repulsion = 17064.205786 eV Total energy + Delta-G solvation = -3077.219412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.37641 -37.70048 -36.08494 -34.42014 -33.78664 -33.64436 -29.67699 -29.37455 -28.35532 -27.08602 -25.14009 -22.24143 -21.41964 -21.01398 -19.91941 -17.51764 -17.34831 -16.81574 -16.03195 -15.38705 -15.02937 -14.28119 -14.06493 -13.90993 -13.59180 -13.50900 -13.21514 -12.73525 -12.48759 -11.67603 -11.45593 -11.43261 -11.26873 -11.16202 -10.97067 -10.71343 -10.55643 -10.47502 -10.24417 -10.07944 -9.70971 -9.28287 -9.14593 -7.56497 -7.50879 -7.37861 -6.81206 -6.25311 -4.44559 1.96167 2.20059 2.56008 2.68603 2.85818 3.05521 3.09190 3.17539 3.90635 4.13599 4.41636 4.52114 4.60588 5.50322 5.53118 5.64139 6.02745 6.12126 6.13587 6.25587 6.33324 6.53513 6.65899 6.86187 7.00159 7.06750 7.18776 7.23635 7.30867 7.44241 7.63733 7.75905 7.85648 7.99853 8.06822 8.17518 8.33456 8.48999 8.68332 8.79411 8.99615 10.13809 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.006671 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.288031 B = 4196.236141 C = 5284.499697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.440 4.440 8 H 0.076 0.924 9 C 0.116 3.884 10 C -0.150 4.150 11 C -0.104 4.104 12 C -0.236 4.236 13 C -0.087 4.087 14 C 0.004 3.996 15 N -0.666 5.666 16 C 0.191 3.809 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.140 4.140 20 C -0.075 4.075 21 Cl -0.096 7.096 22 C 0.144 3.856 23 N -0.881 5.881 24 H 0.281 0.719 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.383 0.617 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.392 0.608 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -3.300 4.968 7.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.094 0.906 9 C 0.112 3.888 10 C -0.170 4.170 11 C -0.123 4.123 12 C -0.256 4.256 13 C -0.107 4.107 14 C -0.089 4.089 15 N -0.290 5.290 16 C 0.085 3.915 17 C -0.148 4.148 18 C -0.137 4.137 19 C -0.162 4.162 20 C -0.107 4.107 21 Cl -0.068 7.068 22 C 0.039 3.961 23 N -0.426 5.426 24 H 0.092 0.908 25 H 0.136 0.864 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.218 0.782 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.220 0.780 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.963 -3.089 5.001 7.693 hybrid contribution 1.067 0.709 -0.178 1.293 sum 6.031 -2.381 4.823 8.081 Atomic orbital electron populations 1.69804 1.07340 1.29233 1.35547 1.25862 0.94782 1.01170 0.92273 0.86328 0.80666 0.80816 0.79129 1.19432 1.20171 1.18633 1.19342 0.96063 0.90184 1.41349 0.90622 1.17848 0.91309 0.91744 0.87911 1.21030 0.98527 0.96720 1.00682 1.20494 0.98594 0.93504 0.99702 1.20232 1.00801 0.96836 1.07743 1.20790 0.95331 0.96098 0.98439 1.17256 0.95053 0.93850 1.02776 1.40833 1.09305 1.72499 1.06323 1.17328 0.91500 0.97820 0.84835 1.20674 0.96655 1.02257 0.95188 1.20592 0.97448 1.02074 0.93598 1.20391 0.90461 1.05391 0.99933 1.19890 0.87787 1.12963 0.90051 1.98278 1.41612 1.97592 1.69274 1.16911 0.85818 1.02407 0.91007 1.42154 1.06067 1.79542 1.14816 0.90841 0.86403 0.89397 0.89352 0.89273 0.78233 0.84967 0.86278 0.86388 0.77999 0.77579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.62 10.97 55.55 0.61 -19.01 16 2 C 0.08 1.86 5.23 -17.33 -0.09 1.77 16 3 Si 0.91 18.73 29.58 -169.99 -5.03 13.70 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.44 -10.95 8.43 -37.92 -0.32 -11.27 16 8 H 0.08 1.90 7.67 -52.49 -0.40 1.49 16 9 C 0.12 2.83 5.26 -106.63 -0.56 2.27 16 10 C -0.15 -3.63 8.59 -39.29 -0.34 -3.97 16 11 C -0.10 -2.30 9.97 -39.97 -0.40 -2.70 16 12 C -0.24 -4.96 10.03 -39.37 -0.40 -5.35 16 13 C -0.09 -1.83 9.96 -39.41 -0.39 -2.22 16 14 C 0.00 0.09 4.46 -83.31 -0.37 -0.28 16 15 N -0.67 -12.93 4.69 -7.91 -0.04 -12.97 16 16 C 0.19 3.72 6.41 -83.53 -0.54 3.19 16 17 C -0.12 -2.52 9.26 -39.39 -0.36 -2.89 16 18 C -0.12 -2.08 10.04 -39.57 -0.40 -2.47 16 19 C -0.14 -2.34 9.82 -39.52 -0.39 -2.73 16 20 C -0.07 -1.27 6.33 -39.35 -0.25 -1.51 16 21 Cl -0.10 -1.38 27.59 -51.86 -1.43 -2.81 16 22 C 0.14 2.52 6.78 -83.46 -0.57 1.96 16 23 N -0.88 -12.55 9.04 32.57 0.29 -12.25 16 24 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 25 H 0.12 2.98 6.35 -52.49 -0.33 2.64 16 26 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.38 6.53 7.00 -40.82 -0.29 6.25 16 30 H 0.13 3.02 6.82 -52.48 -0.36 2.67 16 31 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.39 5.04 7.01 -40.82 -0.29 4.76 16 34 H 0.40 5.03 7.51 -40.82 -0.31 4.72 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -25.63 304.68 -9.59 -35.22 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -3.22 Total: 19.73 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -5.37 Total: -26.20 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.87 Total: -44.23 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.43 Total: -2.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.63 -9.59 -35.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216527344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.191 kcal (2) G-P(sol) polarization free energy of solvation -25.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds