Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86805 * 119.99735 * 2 1 4 4 H 1.48494 * 109.47256 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.47071 * 30.00156 * 3 2 1 6 6 H 1.48496 * 109.47136 * 149.99992 * 3 2 1 7 7 C 1.39888 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00043 * 191.35524 * 7 2 1 9 9 C 1.40997 * 120.00160 * 11.35885 * 7 2 1 10 10 C 1.40748 * 120.30965 * 30.20243 * 9 7 2 11 11 C 1.36421 * 119.95532 * 180.30315 * 10 9 7 12 12 C 1.38947 * 120.60716 * 359.69558 * 11 10 9 13 13 C 1.38088 * 120.64111 * 0.02562 * 12 11 10 14 14 C 1.38843 * 120.02172 * 0.02562 * 13 12 11 15 15 N 1.38595 * 120.30457 * 179.97438 * 14 13 12 16 16 C 1.39812 * 119.99645 * 260.31712 * 15 14 13 17 17 C 1.38804 * 120.10227 * 2.59401 * 16 15 14 18 18 C 1.38190 * 120.01187 * 179.72041 * 17 16 15 19 19 C 1.38315 * 120.21274 * 0.55045 * 18 17 16 20 20 C 1.38329 * 120.20470 * 359.72126 * 19 18 17 21 21 Cl 1.73599 * 120.00826 * 179.97438 * 20 19 18 22 22 C 1.38779 * 119.98216 * 0.02562 * 20 19 18 23 23 N 1.39979 * 120.10707 * 179.97438 * 22 20 19 24 24 H 0.96998 * 120.00446 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.02317 * 359.97438 * 10 9 7 26 26 H 1.07991 * 119.69422 * 179.72092 * 11 10 9 27 27 H 1.08002 * 119.67535 * 180.02562 * 12 11 10 28 28 H 1.08001 * 119.98825 * 179.97438 * 13 12 11 29 29 H 0.96994 * 119.99870 * 80.04218 * 15 14 13 30 30 H 1.08005 * 119.99130 * 359.97438 * 17 16 15 31 31 H 1.07998 * 119.88967 * 180.27659 * 18 17 16 32 32 H 1.08000 * 119.89569 * 179.74409 * 19 18 17 33 33 H 0.96998 * 119.99547 * 180.02562 * 23 22 20 34 34 H 0.96994 * 119.99964 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0466 -1.4000 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4403 0.7000 7 6 2.0085 -1.2114 -0.0005 8 1 3.0726 -1.2206 0.1836 9 6 1.3243 -2.4205 -0.2416 10 6 0.1833 -2.4389 -1.0654 11 6 -0.4768 -3.6118 -1.2888 12 6 -0.0299 -4.7955 -0.7146 13 6 1.0901 -4.8070 0.0932 14 6 1.7814 -3.6282 0.3390 15 7 2.9058 -3.6329 1.1492 16 6 2.8069 -3.2309 2.4846 17 6 1.5740 -2.8781 3.0159 18 6 1.4775 -2.4865 4.3376 19 6 2.6083 -2.4336 5.1323 20 6 3.8423 -2.7779 4.6104 21 17 5.2584 -2.7090 5.6122 22 6 3.9480 -3.1773 3.2856 23 7 5.1955 -3.5257 2.7547 24 1 -0.4851 0.8400 0.0004 25 1 -0.1726 -1.5243 -1.5162 26 1 -1.3544 -3.6203 -1.9180 27 1 -0.5637 -5.7155 -0.9018 28 1 1.4279 -5.7330 0.5344 29 1 3.7606 -3.9189 0.7908 30 1 0.6894 -2.9136 2.3972 31 1 0.5165 -2.2167 4.7502 32 1 2.5276 -2.1229 6.1634 33 1 5.2676 -3.8043 1.8284 34 1 5.9877 -3.4886 3.3131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216527344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = 30.622462 kcal Electronic energy + Delta-G solvation = -20141.960741 eV Core-core repulsion = 17064.205786 eV Total energy + Delta-G solvation = -3077.754955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84428 -39.32374 -37.36874 -35.89146 -35.46801 -35.10719 -31.44954 -30.93590 -29.78364 -28.60321 -26.91138 -23.74910 -22.86102 -22.73311 -21.54902 -19.13970 -18.91084 -18.22242 -17.54763 -16.97834 -16.56895 -15.89546 -15.60883 -15.44906 -14.98991 -14.92188 -14.63814 -14.42053 -14.19746 -13.41365 -13.04184 -12.87321 -12.78059 -12.73186 -12.56686 -12.23636 -12.18414 -11.78229 -11.76026 -11.47939 -11.47478 -11.06582 -10.67476 -9.27578 -9.22530 -8.85619 -8.57791 -7.68054 -6.29524 0.54069 0.79051 0.95194 1.09937 1.29664 1.35841 1.45478 1.50215 2.19756 2.76279 2.82798 3.00361 3.14112 3.72567 4.19785 4.23457 4.49060 4.61722 4.65450 4.73487 4.82489 4.93126 5.18707 5.26717 5.31156 5.43021 5.45510 5.60539 5.78333 5.88510 6.00196 6.09282 6.20818 6.38906 6.42147 6.60702 6.89610 6.94790 6.97534 7.06210 7.31366 8.37428 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.006671 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.288031 B = 4196.236141 C = 5284.499697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.040 3.960 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.462 4.462 8 H 0.065 0.935 9 C 0.090 3.910 10 C -0.174 4.174 11 C -0.110 4.110 12 C -0.229 4.229 13 C -0.094 4.094 14 C 0.014 3.986 15 N -0.666 5.666 16 C 0.171 3.829 17 C -0.146 4.146 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.085 4.085 21 Cl -0.070 7.070 22 C 0.147 3.853 23 N -0.869 5.869 24 H 0.285 0.715 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.394 0.606 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.399 0.601 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 -3.910 6.116 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.492 4.492 8 H 0.083 0.917 9 C 0.086 3.914 10 C -0.194 4.194 11 C -0.128 4.128 12 C -0.249 4.249 13 C -0.114 4.114 14 C -0.080 4.080 15 N -0.292 5.292 16 C 0.067 3.933 17 C -0.170 4.170 18 C -0.145 4.145 19 C -0.153 4.153 20 C -0.118 4.118 21 Cl -0.041 7.041 22 C 0.040 3.960 23 N -0.415 5.415 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.230 0.770 30 H 0.116 0.884 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.228 0.772 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.202 -3.718 6.149 9.492 hybrid contribution 0.730 0.756 -0.457 1.146 sum 6.932 -2.962 5.692 9.446 Atomic orbital electron populations 1.69862 1.08351 1.29997 1.36880 1.26496 0.95425 1.03672 0.91840 0.85441 0.79059 0.77468 0.79247 1.18705 1.19538 1.19242 1.19354 0.95609 0.91178 1.43089 0.91671 1.18126 0.91906 0.92742 0.88585 1.21001 0.99603 0.96969 1.01851 1.20748 0.99032 0.93178 0.99869 1.20603 1.00462 0.97502 1.06340 1.21081 0.95290 0.96618 0.98416 1.17377 0.95331 0.93432 1.01861 1.40710 1.09109 1.73059 1.06303 1.17392 0.92068 0.98967 0.84917 1.20542 0.95949 1.04445 0.96112 1.20766 0.98867 1.02016 0.92827 1.20682 0.89862 1.03883 1.00887 1.20071 0.88981 1.12432 0.90267 1.98286 1.40021 1.97458 1.68369 1.16948 0.86175 1.01677 0.91173 1.42114 1.05343 1.78656 1.15354 0.90494 0.88315 0.87331 0.86397 0.87136 0.76996 0.88409 0.84783 0.83771 0.77172 0.76454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.21 10.97 21.82 0.24 -41.97 16 2 C 0.04 1.99 5.23 85.23 0.45 2.44 16 3 Si 0.97 39.10 29.58 68.60 2.03 41.13 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.46 -23.76 8.43 23.35 0.20 -23.57 16 8 H 0.07 3.37 7.67 -2.91 -0.02 3.34 16 9 C 0.09 4.54 5.26 -21.16 -0.11 4.43 16 10 C -0.17 -8.71 8.59 22.46 0.19 -8.52 16 11 C -0.11 -4.82 9.97 22.02 0.22 -4.60 16 12 C -0.23 -9.30 10.03 22.40 0.22 -9.08 16 13 C -0.09 -3.88 9.96 22.38 0.22 -3.66 16 14 C 0.01 0.63 4.46 39.04 0.17 0.80 16 15 N -0.67 -25.83 4.69 -178.93 -0.84 -26.67 16 16 C 0.17 6.66 6.41 38.31 0.25 6.90 16 17 C -0.15 -6.06 9.26 22.39 0.21 -5.85 16 18 C -0.12 -4.36 10.04 22.28 0.22 -4.14 16 19 C -0.13 -4.14 9.82 22.31 0.22 -3.92 16 20 C -0.08 -2.69 6.33 22.42 0.14 -2.55 16 21 Cl -0.07 -1.81 27.59 -2.72 -0.08 -1.88 16 22 C 0.15 4.94 6.78 38.28 0.26 5.20 16 23 N -0.87 -23.07 9.04 -50.88 -0.46 -23.53 16 24 H 0.28 13.41 8.30 -92.71 -0.77 12.64 16 25 H 0.10 5.23 6.35 -2.91 -0.02 5.21 16 26 H 0.11 4.20 8.06 -2.92 -0.02 4.18 16 27 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 28 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.39 13.21 7.00 -92.71 -0.65 12.56 16 30 H 0.10 4.69 6.82 -2.91 -0.02 4.67 16 31 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.40 9.58 7.01 -92.71 -0.65 8.93 16 34 H 0.40 9.28 7.51 -92.71 -0.70 8.59 16 Total: -1.00 -55.63 304.68 2.94 -52.70 By element: Atomic # 1 Polarization: 47.16 SS G_CDS: -0.82 Total: 46.34 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 2.86 Total: -46.10 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -1.06 Total: -92.18 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.88 kcal Total: -55.63 2.94 -52.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216527344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.319 kcal (2) G-P(sol) polarization free energy of solvation -55.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds