Wall clock time and date at job start Tue Mar 31 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35602 * 117.00029 * 2 1 4 4 C 1.39137 * 119.88742 * 0.23380 * 3 2 1 5 5 C 1.36422 * 120.44133 * 180.28464 * 4 3 2 6 6 C 1.40915 * 120.18486 * 359.75901 * 5 4 3 7 7 C 1.41247 * 120.11543 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99994 * 24.58109 * 7 6 5 9 9 C 1.39862 * 119.99530 * 204.58394 * 7 6 5 10 10 N 1.30888 * 120.00177 * 17.95618 * 9 7 6 11 11 Si 1.86799 * 119.99730 * 197.95447 * 9 7 6 12 12 H 1.48501 * 109.46913 * 59.99891 * 11 9 7 13 13 H 1.48499 * 109.47123 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47334 * 300.00251 * 11 9 7 15 15 C 1.40611 * 119.76478 * 359.97438 * 6 5 4 16 16 C 1.38601 * 119.57035 * 359.97438 * 15 6 5 17 17 C 1.48321 * 120.09795 * 179.97438 * 16 15 6 18 18 C 1.39370 * 120.12730 * 64.99821 * 17 16 15 19 19 C 1.37998 * 119.88733 * 179.69875 * 18 17 16 20 20 C 1.38352 * 120.14909 * 0.30649 * 19 18 17 21 21 C 1.38281 * 120.26348 * 359.97324 * 20 19 18 22 22 C 1.38148 * 120.11093 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 120.07508 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46853 * 300.00123 * 1 2 3 26 26 H 1.08997 * 109.46475 * 60.00265 * 1 2 3 27 27 H 1.07999 * 119.78193 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.90875 * 179.74358 * 5 4 3 29 29 H 0.97006 * 120.00068 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.21765 * 180.02562 * 15 6 5 31 31 H 1.08000 * 120.05757 * 359.97438 * 18 17 16 32 32 H 1.08001 * 119.92468 * 180.27652 * 19 18 17 33 33 H 1.08005 * 119.86434 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.94141 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2846 2.3736 0.0049 5 6 1.8922 3.5951 -0.0009 6 6 3.2983 3.6870 -0.0068 7 6 3.9258 4.9524 -0.0122 8 1 3.4053 5.8149 0.3770 9 6 5.2212 5.0883 -0.5217 10 7 5.7192 4.1608 -1.2995 11 14 6.2405 6.5936 -0.0922 12 1 6.4247 6.6631 1.3797 13 1 7.5671 6.4980 -0.7527 14 1 5.5402 7.8161 -0.5617 15 6 4.0745 2.5145 -0.0062 16 6 3.4468 1.2788 0.0008 17 6 4.2542 0.0345 0.0010 18 6 5.0675 -0.2715 1.0906 19 6 5.8118 -1.4336 1.0882 20 6 5.7570 -2.2916 0.0043 21 6 4.9565 -1.9913 -1.0826 22 6 4.2061 -0.8314 -1.0911 23 17 3.2010 -0.4556 -2.4558 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 0.2065 2.3109 0.0083 28 1 1.2938 4.4942 -0.0012 29 1 6.6178 4.2549 -1.6526 30 1 5.1527 2.5764 -0.0103 31 1 5.1118 0.3975 1.9373 32 1 6.4388 -1.6735 1.9342 33 1 6.3417 -3.1997 0.0071 34 1 4.9180 -2.6646 -1.9261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222431562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:27 Heat of formation + Delta-G solvation = -3.843037 kcal Electronic energy + Delta-G solvation = -20082.620051 eV Core-core repulsion = 16971.077809 eV Total energy + Delta-G solvation = -3111.542242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.25352 -38.15997 -36.28843 -35.71651 -33.41054 -31.93186 -30.29165 -29.10084 -28.24843 -26.79604 -24.62923 -22.70372 -22.09245 -20.66674 -20.02254 -17.49085 -16.84621 -16.34417 -15.36379 -15.11143 -14.98073 -14.66494 -14.47183 -13.75998 -13.35383 -13.09073 -12.99999 -12.58935 -12.45310 -12.01871 -11.58602 -11.32255 -11.21227 -11.08468 -10.98236 -10.89197 -10.76915 -10.62619 -10.18009 -9.97232 -9.85738 -9.43180 -9.03060 -8.51659 -8.20140 -7.46808 -7.00049 -6.70617 -4.25257 1.62311 1.68924 2.74141 2.82592 2.86301 3.08705 3.10730 3.20986 3.95737 4.10734 4.35899 4.57501 5.19622 5.26399 5.34700 5.58688 5.67116 5.69260 5.74189 5.83651 5.90962 6.08435 6.13630 6.29437 6.46655 6.65659 6.75893 6.87549 6.95622 7.08297 7.17533 7.21608 7.39044 7.47081 7.74703 7.94232 8.15934 8.44375 8.61654 8.88968 8.94672 10.23206 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.006618 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.413222 B = 4229.758968 C = 5195.248351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.320 6.320 3 C 0.027 3.973 4 C -0.172 4.172 5 C -0.185 4.185 6 C 0.085 3.915 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.796 5.796 11 Si 0.905 3.095 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.267 1.267 15 C -0.108 4.108 16 C -0.073 4.073 17 C 0.012 3.988 18 C -0.103 4.103 19 C -0.122 4.122 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.015 4.015 23 Cl -0.064 7.064 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.281 0.719 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 -9.040 1.855 9.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.235 6.235 3 C -0.017 4.017 4 C -0.191 4.191 5 C -0.205 4.205 6 C 0.083 3.917 7 C -0.495 4.495 8 H 0.094 0.906 9 C -0.141 4.141 10 N -0.422 5.422 11 Si 0.730 3.270 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.191 1.191 15 C -0.128 4.128 16 C -0.074 4.074 17 C 0.011 3.989 18 C -0.121 4.121 19 C -0.140 4.140 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.042 4.042 23 Cl -0.035 7.035 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.927 -9.237 1.575 9.416 hybrid contribution 0.115 0.933 -0.107 0.946 sum -0.812 -8.305 1.468 8.472 Atomic orbital electron populations 1.22692 0.81248 1.01634 1.00147 1.85888 1.18778 1.28130 1.90680 1.18421 0.90495 0.83121 1.09651 1.20334 0.97407 0.92840 1.08507 1.20627 0.94812 0.95117 1.09905 1.17463 0.90533 0.93248 0.90489 1.19378 0.98679 0.94872 1.36531 0.90564 1.25843 0.97987 0.97640 0.92662 1.69827 1.16485 1.33570 1.22350 0.86420 0.78844 0.81894 0.79870 1.18917 1.20404 1.19126 1.21256 0.99870 0.89027 1.02597 1.17723 0.88858 0.91729 1.09054 1.18773 0.94855 0.93512 0.91773 1.21249 0.96092 0.96920 0.97828 1.21056 0.99704 0.94780 0.98465 1.20934 0.99849 0.99920 0.93799 1.20879 0.97608 0.95984 0.99350 1.20996 0.96691 0.96160 0.90327 1.98342 1.68121 1.94415 1.42596 0.90158 0.94090 0.94011 0.88468 0.88661 0.90850 0.85370 0.85406 0.86092 0.86017 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.80 101.05 0.99 1.60 16 2 O -0.32 -6.49 8.89 -18.50 -0.16 -6.65 16 3 C 0.03 0.61 5.97 -38.44 -0.23 0.38 16 4 C -0.17 -3.82 8.95 -39.90 -0.36 -4.18 16 5 C -0.18 -4.45 9.72 -39.22 -0.38 -4.83 16 6 C 0.08 2.22 5.57 -106.85 -0.60 1.62 16 7 C -0.46 -12.11 9.04 -37.83 -0.34 -12.45 16 8 H 0.08 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.08 1.88 5.13 -17.35 -0.09 1.79 16 10 N -0.80 -20.52 10.96 55.54 0.61 -19.91 16 11 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 16 12 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 C -0.11 -2.75 8.36 -38.55 -0.32 -3.07 16 16 C -0.07 -1.70 4.67 -104.80 -0.49 -2.19 16 17 C 0.01 0.24 4.94 -104.87 -0.52 -0.28 16 18 C -0.10 -1.85 9.73 -39.25 -0.38 -2.24 16 19 C -0.12 -1.82 10.03 -39.63 -0.40 -2.21 16 20 C -0.13 -1.80 10.04 -39.52 -0.40 -2.20 16 21 C -0.12 -1.91 9.82 -39.60 -0.39 -2.30 16 22 C -0.02 -0.29 6.07 -39.16 -0.24 -0.53 16 23 Cl -0.06 -1.25 26.63 -51.86 -1.38 -2.63 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.60 7.64 -51.93 -0.40 0.21 16 26 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 27 H 0.10 1.88 6.26 -52.49 -0.33 1.56 16 28 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 30 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 31 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -28.11 307.60 -9.00 -37.11 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.53 Total: 4.96 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -4.14 Total: -31.08 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.61 Total: -19.91 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.16 Total: -6.65 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.38 Total: -2.63 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.11 -9.00 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222431562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.264 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds