Wall clock time and date at job start Tue Mar 31 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35602 * 117.00029 * 2 1 4 4 C 1.39137 * 119.88742 * 0.23380 * 3 2 1 5 5 C 1.36422 * 120.44133 * 180.28464 * 4 3 2 6 6 C 1.40915 * 120.18486 * 359.75901 * 5 4 3 7 7 C 1.41247 * 120.11543 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99994 * 24.58109 * 7 6 5 9 9 C 1.39862 * 119.99530 * 204.58394 * 7 6 5 10 10 N 1.30888 * 120.00177 * 17.95618 * 9 7 6 11 11 Si 1.86799 * 119.99730 * 197.95447 * 9 7 6 12 12 H 1.48501 * 109.46913 * 59.99891 * 11 9 7 13 13 H 1.48499 * 109.47123 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47334 * 300.00251 * 11 9 7 15 15 C 1.40611 * 119.76478 * 359.97438 * 6 5 4 16 16 C 1.38601 * 119.57035 * 359.97438 * 15 6 5 17 17 C 1.48321 * 120.09795 * 179.97438 * 16 15 6 18 18 C 1.39370 * 120.12730 * 64.99821 * 17 16 15 19 19 C 1.37998 * 119.88733 * 179.69875 * 18 17 16 20 20 C 1.38352 * 120.14909 * 0.30649 * 19 18 17 21 21 C 1.38281 * 120.26348 * 359.97324 * 20 19 18 22 22 C 1.38148 * 120.11093 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 120.07508 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46853 * 300.00123 * 1 2 3 26 26 H 1.08997 * 109.46475 * 60.00265 * 1 2 3 27 27 H 1.07999 * 119.78193 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.90875 * 179.74358 * 5 4 3 29 29 H 0.97006 * 120.00068 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.21765 * 180.02562 * 15 6 5 31 31 H 1.08000 * 120.05757 * 359.97438 * 18 17 16 32 32 H 1.08001 * 119.92468 * 180.27652 * 19 18 17 33 33 H 1.08005 * 119.86434 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.94141 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2846 2.3736 0.0049 5 6 1.8922 3.5951 -0.0009 6 6 3.2983 3.6870 -0.0068 7 6 3.9258 4.9524 -0.0122 8 1 3.4053 5.8149 0.3770 9 6 5.2212 5.0883 -0.5217 10 7 5.7192 4.1608 -1.2995 11 14 6.2405 6.5936 -0.0922 12 1 6.4247 6.6631 1.3797 13 1 7.5671 6.4980 -0.7527 14 1 5.5402 7.8161 -0.5617 15 6 4.0745 2.5145 -0.0062 16 6 3.4468 1.2788 0.0008 17 6 4.2542 0.0345 0.0010 18 6 5.0675 -0.2715 1.0906 19 6 5.8118 -1.4336 1.0882 20 6 5.7570 -2.2916 0.0043 21 6 4.9565 -1.9913 -1.0826 22 6 4.2061 -0.8314 -1.0911 23 17 3.2010 -0.4556 -2.4558 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 0.2065 2.3109 0.0083 28 1 1.2938 4.4942 -0.0012 29 1 6.6178 4.2549 -1.6526 30 1 5.1527 2.5764 -0.0103 31 1 5.1118 0.3975 1.9373 32 1 6.4388 -1.6735 1.9342 33 1 6.3417 -3.1997 0.0071 34 1 4.9180 -2.6646 -1.9261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222431562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:26 Heat of formation + Delta-G solvation = -17.047433 kcal Electronic energy + Delta-G solvation = -20083.192636 eV Core-core repulsion = 16971.077809 eV Total energy + Delta-G solvation = -3112.114828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81262 -39.59318 -38.01315 -37.15660 -35.22262 -33.49171 -31.58855 -30.93351 -29.77651 -28.27648 -26.41370 -24.19883 -23.42149 -22.41671 -21.63931 -19.22279 -18.51976 -17.75678 -17.06971 -16.61068 -16.42427 -16.20921 -15.88957 -15.28446 -14.85543 -14.64052 -14.47428 -14.11006 -14.01055 -13.74674 -13.23947 -12.88427 -12.75161 -12.60151 -12.42051 -12.31832 -12.28577 -12.21100 -11.77140 -11.63008 -11.55524 -11.13674 -10.85084 -9.90644 -9.60987 -9.20533 -8.80730 -8.54182 -6.19291 0.26524 0.38077 0.98992 1.04830 1.39356 1.40528 1.49862 1.54382 2.23602 2.69530 2.82698 2.86204 3.67285 3.86131 4.01998 4.18428 4.31231 4.44613 4.49220 4.50728 4.56793 4.65315 4.75878 4.86292 5.05069 5.08805 5.23206 5.28653 5.35980 5.47744 5.53364 5.61365 5.66489 5.88197 6.00455 6.07096 6.28608 6.59257 6.83809 6.98174 7.12035 8.39953 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.006618 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.413222 B = 4229.758968 C = 5195.248351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.329 6.329 3 C 0.033 3.967 4 C -0.175 4.175 5 C -0.199 4.199 6 C 0.052 3.948 7 C -0.501 4.501 8 H 0.074 0.926 9 C 0.036 3.964 10 N -0.830 5.830 11 Si 0.977 3.023 12 H -0.261 1.261 13 H -0.270 1.270 14 H -0.261 1.261 15 C -0.128 4.128 16 C -0.075 4.075 17 C -0.027 4.027 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.036 4.036 23 Cl -0.080 7.080 24 H 0.112 0.888 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.285 0.715 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.583 -11.051 2.439 11.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.244 6.244 3 C -0.011 4.011 4 C -0.194 4.194 5 C -0.219 4.219 6 C 0.051 3.949 7 C -0.531 4.531 8 H 0.092 0.908 9 C -0.178 4.178 10 N -0.457 5.457 11 Si 0.798 3.202 12 H -0.185 1.185 13 H -0.195 1.195 14 H -0.185 1.185 15 C -0.147 4.147 16 C -0.076 4.076 17 C -0.028 4.028 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.138 4.138 22 C -0.063 4.063 23 Cl -0.051 7.051 24 H 0.130 0.870 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.145 0.855 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.177 0.823 33 H 0.186 0.814 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.402 -11.263 2.162 11.475 hybrid contribution -0.148 1.328 -0.260 1.362 sum -0.550 -9.935 1.901 10.130 Atomic orbital electron populations 1.23037 0.78722 1.04088 1.00814 1.85882 1.21343 1.26819 1.90313 1.18567 0.90620 0.84022 1.07898 1.20636 0.99005 0.92146 1.07583 1.20811 0.94356 0.96336 1.10407 1.17820 0.91728 0.93803 0.91600 1.19616 1.00160 0.95037 1.38258 0.90754 1.26649 0.98550 1.00682 0.91908 1.69909 1.16963 1.35539 1.23271 0.85338 0.77265 0.78015 0.79605 1.18503 1.19468 1.18537 1.21112 0.98955 0.90067 1.04598 1.17976 0.89893 0.92300 1.07404 1.18830 0.96711 0.93422 0.93820 1.21381 0.96698 0.98491 0.97204 1.21479 0.98538 0.93096 0.99862 1.21482 0.98414 1.00793 0.92156 1.21266 0.96726 0.94948 1.00854 1.21205 0.97906 0.97429 0.89730 1.98324 1.68790 1.94688 1.43263 0.86958 0.92991 0.93630 0.85520 0.87907 0.90458 0.87385 0.85948 0.82341 0.81416 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.80 113.37 1.11 1.94 16 2 O -0.33 -13.04 8.89 -89.13 -0.79 -13.83 16 3 C 0.03 1.51 5.97 23.01 0.14 1.65 16 4 C -0.18 -7.83 8.95 22.06 0.20 -7.63 16 5 C -0.20 -9.91 9.72 22.50 0.22 -9.70 16 6 C 0.05 2.88 5.57 -21.31 -0.12 2.76 16 7 C -0.50 -27.37 9.04 23.40 0.21 -27.15 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 9 C 0.04 1.85 5.13 85.23 0.44 2.28 16 10 N -0.83 -44.61 10.96 21.81 0.24 -44.37 16 11 Si 0.98 39.04 29.60 68.60 2.03 41.07 16 12 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 13 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 15 C -0.13 -6.85 8.36 22.94 0.19 -6.65 16 16 C -0.07 -3.60 4.67 -19.98 -0.09 -3.70 16 17 C -0.03 -1.13 4.94 -20.03 -0.10 -1.23 16 18 C -0.12 -4.26 9.73 22.49 0.22 -4.04 16 19 C -0.11 -2.98 10.03 22.24 0.22 -2.76 16 20 C -0.11 -2.67 10.04 22.31 0.22 -2.45 16 21 C -0.12 -3.50 9.82 22.26 0.22 -3.28 16 22 C -0.04 -1.37 6.07 22.54 0.14 -1.24 16 23 Cl -0.08 -3.11 26.63 -2.72 -0.07 -3.19 16 24 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.05 1.41 7.64 -2.39 -0.02 1.39 16 26 H 0.05 1.30 7.66 -2.39 -0.02 1.29 16 27 H 0.13 4.77 6.26 -2.91 -0.02 4.75 16 28 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.28 14.02 8.30 -92.70 -0.77 13.25 16 30 H 0.11 6.11 6.16 -2.91 -0.02 6.09 16 31 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 33 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -64.34 307.60 5.74 -58.60 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.12 Total: 22.90 kcal Atomic # 6 Polarization: -64.41 SS G_CDS: 3.22 Total: -61.20 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.24 Total: -44.37 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.79 Total: -13.83 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Atomic # 17 Polarization: -3.11 SS G_CDS: -0.07 Total: -3.19 kcal Total: -64.34 5.74 -58.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222431562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.556 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds