Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35875 * 117.00120 * 2 1 4 4 C 1.39481 * 119.77780 * 0.02562 * 3 2 1 5 5 C 1.37938 * 120.61683 * 180.27440 * 4 3 2 6 6 C 1.39180 * 120.16698 * 359.44308 * 5 4 3 7 7 C 1.47809 * 120.22265 * 180.29911 * 6 5 4 8 8 C 1.39683 * 120.15725 * 64.99435 * 7 6 5 9 9 C 1.37891 * 119.85583 * 179.76609 * 8 7 6 10 10 C 1.38443 * 120.18552 * 0.51560 * 9 8 7 11 11 C 1.38349 * 120.31888 * 359.73892 * 10 9 8 12 12 C 1.38075 * 120.13651 * 359.97438 * 11 10 9 13 13 Cl 1.73597 * 120.09108 * 180.02562 * 12 11 10 14 14 C 1.41906 * 119.55729 * 0.57114 * 6 5 4 15 15 C 1.40889 * 120.30259 * 179.68449 * 14 6 5 16 16 H 1.07995 * 119.99543 * 25.06646 * 15 14 6 17 17 C 1.40046 * 119.99837 * 205.06086 * 15 14 6 18 18 N 1.30787 * 119.99757 * 16.29547 * 17 15 14 19 19 Si 1.86797 * 119.99882 * 196.29068 * 17 15 14 20 20 H 1.48491 * 109.47092 * 94.86738 * 19 17 15 21 21 H 1.48500 * 109.47228 * 214.87091 * 19 17 15 22 22 H 1.48503 * 109.47236 * 334.86456 * 19 17 15 23 23 C 1.37922 * 119.78116 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47082 * 59.99255 * 1 2 3 25 25 H 1.08997 * 109.46981 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47233 * 299.99739 * 1 2 3 27 27 H 1.08000 * 119.68885 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.91017 * 179.69652 * 5 4 3 29 29 H 1.07998 * 120.07269 * 0.02562 * 8 7 6 30 30 H 1.08001 * 119.91304 * 180.24962 * 9 8 7 31 31 H 1.07991 * 119.84240 * 179.76096 * 10 9 8 32 32 H 1.07995 * 119.92851 * 179.97438 * 11 10 9 33 33 H 0.97002 * 119.99668 * 179.97438 * 18 17 15 34 34 H 1.08001 * 120.09044 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2817 2.3775 0.0005 5 6 1.8898 3.6155 -0.0051 6 6 3.2782 3.7128 0.0002 7 6 3.9312 5.0388 0.0008 8 6 3.7789 5.8956 1.0935 9 6 4.3947 7.1293 1.0896 10 6 5.1542 7.5247 0.0017 11 6 5.3057 6.6843 -1.0868 12 6 4.6998 5.4437 -1.0943 13 17 4.8912 4.3898 -2.4605 14 6 4.0628 2.5303 -0.0008 15 6 5.4694 2.6105 -0.0021 16 1 5.9606 3.4870 0.3938 17 6 6.2305 1.5536 -0.5168 18 7 5.6657 0.6494 -1.2744 19 14 8.0523 1.4353 -0.1213 20 1 8.2478 0.5421 1.0488 21 1 8.7783 0.8825 -1.2928 22 1 8.5791 2.7873 0.1946 23 6 3.4234 1.2775 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2037 2.3109 0.0005 28 1 1.2870 4.5117 -0.0096 29 1 3.1834 5.5907 1.9414 30 1 4.2809 7.7908 1.9357 31 1 5.6309 8.4937 0.0028 32 1 5.8992 6.9993 -1.9322 33 1 6.1929 -0.0825 -1.6312 34 1 4.0096 0.3704 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222437621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = -6.026224 kcal Electronic energy + Delta-G solvation = -20119.523598 eV Core-core repulsion = 17007.886685 eV Total energy + Delta-G solvation = -3111.636912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.00687 -38.30172 -36.18416 -35.38718 -33.58292 -31.24971 -30.16215 -29.65987 -28.12654 -26.19054 -25.17340 -22.37416 -21.87125 -20.88865 -19.74441 -17.70985 -16.55196 -16.11494 -15.24853 -15.08234 -14.85310 -14.73248 -14.51528 -13.70196 -13.19316 -13.11462 -13.04261 -12.54753 -12.15333 -11.76297 -11.69140 -11.38843 -11.20028 -11.09157 -10.89321 -10.73696 -10.63163 -10.46009 -10.06300 -9.84320 -9.65854 -9.56400 -9.11815 -8.31401 -7.89916 -7.46402 -6.91774 -6.65497 -4.39911 1.79770 1.84364 2.76257 2.96758 3.07576 3.11543 3.14628 3.21873 3.92238 4.26671 4.33195 4.60539 5.34571 5.39205 5.51997 5.61642 5.67424 5.75116 5.88387 5.92184 5.99862 6.12064 6.32077 6.36509 6.51731 6.79875 6.84941 6.92383 7.00074 7.10197 7.27458 7.39396 7.42590 7.70425 7.79594 7.97855 8.04533 8.37355 8.75172 8.84283 8.92109 10.13561 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.008640 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.298748 B = 3239.995300 C = 4741.146503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.134 3.866 4 C -0.321 4.321 5 C -0.035 4.035 6 C -0.214 4.214 7 C 0.034 3.966 8 C -0.117 4.117 9 C -0.125 4.125 10 C -0.136 4.136 11 C -0.122 4.122 12 C -0.021 4.021 13 Cl -0.051 7.051 14 C 0.165 3.835 15 C -0.431 4.431 16 H 0.079 0.921 17 C 0.082 3.918 18 N -0.773 5.773 19 Si 0.899 3.101 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.195 4.195 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.282 0.718 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 6.170 1.363 6.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.090 3.910 4 C -0.341 4.341 5 C -0.054 4.054 6 C -0.215 4.215 7 C 0.033 3.967 8 C -0.135 4.135 9 C -0.143 4.143 10 C -0.154 4.154 11 C -0.140 4.140 12 C -0.047 4.047 13 Cl -0.022 7.022 14 C 0.162 3.838 15 C -0.460 4.460 16 H 0.097 0.903 17 C -0.138 4.138 18 N -0.396 5.396 19 Si 0.723 3.277 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.183 1.183 23 C -0.215 4.215 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.093 0.907 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.057 5.667 1.077 6.124 hybrid contribution 0.578 -0.028 -0.064 0.582 sum -1.480 5.638 1.013 5.917 Atomic orbital electron populations 1.22745 0.80845 1.01785 1.00488 1.86002 1.19451 1.29204 1.89774 1.19007 0.92484 0.82402 0.97098 1.20295 0.97216 0.92443 1.24134 1.20235 0.93028 0.95209 0.96913 1.18343 0.92092 0.90547 1.20535 1.18707 0.93499 0.93567 0.90905 1.21310 1.00651 0.93750 0.97822 1.20994 0.98492 0.96594 0.98207 1.20892 1.01035 0.99445 0.94042 1.20901 1.00704 0.93155 0.99276 1.21225 1.00686 0.91684 0.91155 1.98371 1.96100 1.65892 1.41810 1.17087 0.92556 0.88598 0.85572 1.19433 0.90904 1.02006 1.33612 0.90284 1.25883 1.00911 0.94393 0.92614 1.69823 1.38383 1.10241 1.21194 0.86416 0.82297 0.79898 0.79043 1.19237 1.20146 1.18326 1.20546 0.89299 0.99168 1.12482 0.93694 0.89991 0.93741 0.88705 0.89140 0.85954 0.86599 0.86447 0.86084 0.90726 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.80 101.05 0.99 1.60 16 2 O -0.33 -7.28 10.48 -19.35 -0.20 -7.48 16 3 C 0.13 3.23 6.67 -39.23 -0.26 2.97 16 4 C -0.32 -7.14 9.02 -39.23 -0.35 -7.49 16 5 C -0.04 -0.79 9.71 -39.34 -0.38 -1.17 16 6 C -0.21 -4.98 4.71 -104.23 -0.49 -5.48 16 7 C 0.03 0.71 4.37 -104.87 -0.46 0.26 16 8 C -0.12 -2.11 9.75 -39.17 -0.38 -2.49 16 9 C -0.12 -1.91 10.03 -39.63 -0.40 -2.31 16 10 C -0.14 -2.05 10.04 -39.47 -0.40 -2.44 16 11 C -0.12 -2.07 9.82 -39.60 -0.39 -2.46 16 12 C -0.02 -0.42 5.68 -39.06 -0.22 -0.64 16 13 Cl -0.05 -1.10 26.16 -51.86 -1.36 -2.45 16 14 C 0.17 4.20 5.07 -106.58 -0.54 3.66 16 15 C -0.43 -10.86 6.68 -37.90 -0.25 -11.12 16 16 H 0.08 2.01 7.06 -52.49 -0.37 1.63 16 17 C 0.08 2.00 5.17 -17.32 -0.09 1.91 16 18 N -0.77 -19.44 10.90 55.55 0.61 -18.83 16 19 Si 0.90 18.59 29.59 -169.99 -5.03 13.56 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.19 -5.09 8.60 -38.79 -0.33 -5.42 16 24 H 0.04 0.70 7.65 -51.93 -0.40 0.30 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.04 0.67 7.64 -51.93 -0.40 0.27 16 27 H 0.09 1.86 6.25 -52.49 -0.33 1.53 16 28 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 34 H 0.13 3.51 6.14 -52.49 -0.32 3.18 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -27.53 305.04 -8.83 -36.37 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.49 Total: 4.87 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: -3.96 Total: -30.63 kcal Atomic # 7 Polarization: -19.44 SS G_CDS: 0.61 Total: -18.83 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.20 Total: -7.48 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.36 Total: -2.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.53 -8.83 -36.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222437621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.339 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds