Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35875 * 117.00120 * 2 1 4 4 C 1.39481 * 119.77780 * 0.02562 * 3 2 1 5 5 C 1.37938 * 120.61683 * 180.27440 * 4 3 2 6 6 C 1.39180 * 120.16698 * 359.44308 * 5 4 3 7 7 C 1.47809 * 120.22265 * 180.29911 * 6 5 4 8 8 C 1.39683 * 120.15725 * 64.99435 * 7 6 5 9 9 C 1.37891 * 119.85583 * 179.76609 * 8 7 6 10 10 C 1.38443 * 120.18552 * 0.51560 * 9 8 7 11 11 C 1.38349 * 120.31888 * 359.73892 * 10 9 8 12 12 C 1.38075 * 120.13651 * 359.97438 * 11 10 9 13 13 Cl 1.73597 * 120.09108 * 180.02562 * 12 11 10 14 14 C 1.41906 * 119.55729 * 0.57114 * 6 5 4 15 15 C 1.40889 * 120.30259 * 179.68449 * 14 6 5 16 16 H 1.07995 * 119.99543 * 25.06646 * 15 14 6 17 17 C 1.40046 * 119.99837 * 205.06086 * 15 14 6 18 18 N 1.30787 * 119.99757 * 16.29547 * 17 15 14 19 19 Si 1.86797 * 119.99882 * 196.29068 * 17 15 14 20 20 H 1.48491 * 109.47092 * 94.86738 * 19 17 15 21 21 H 1.48500 * 109.47228 * 214.87091 * 19 17 15 22 22 H 1.48503 * 109.47236 * 334.86456 * 19 17 15 23 23 C 1.37922 * 119.78116 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47082 * 59.99255 * 1 2 3 25 25 H 1.08997 * 109.46981 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47233 * 299.99739 * 1 2 3 27 27 H 1.08000 * 119.68885 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.91017 * 179.69652 * 5 4 3 29 29 H 1.07998 * 120.07269 * 0.02562 * 8 7 6 30 30 H 1.08001 * 119.91304 * 180.24962 * 9 8 7 31 31 H 1.07991 * 119.84240 * 179.76096 * 10 9 8 32 32 H 1.07995 * 119.92851 * 179.97438 * 11 10 9 33 33 H 0.97002 * 119.99668 * 179.97438 * 18 17 15 34 34 H 1.08001 * 120.09044 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2817 2.3775 0.0005 5 6 1.8898 3.6155 -0.0051 6 6 3.2782 3.7128 0.0002 7 6 3.9312 5.0388 0.0008 8 6 3.7789 5.8956 1.0935 9 6 4.3947 7.1293 1.0896 10 6 5.1542 7.5247 0.0017 11 6 5.3057 6.6843 -1.0868 12 6 4.6998 5.4437 -1.0943 13 17 4.8912 4.3898 -2.4605 14 6 4.0628 2.5303 -0.0008 15 6 5.4694 2.6105 -0.0021 16 1 5.9606 3.4870 0.3938 17 6 6.2305 1.5536 -0.5168 18 7 5.6657 0.6494 -1.2744 19 14 8.0523 1.4353 -0.1213 20 1 8.2478 0.5421 1.0488 21 1 8.7783 0.8825 -1.2928 22 1 8.5791 2.7873 0.1946 23 6 3.4234 1.2775 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2037 2.3109 0.0005 28 1 1.2870 4.5117 -0.0096 29 1 3.1834 5.5907 1.9414 30 1 4.2809 7.7908 1.9357 31 1 5.6309 8.4937 0.0028 32 1 5.8992 6.9993 -1.9322 33 1 6.1929 -0.0825 -1.6312 34 1 4.0096 0.3704 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222437621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = -19.012273 kcal Electronic energy + Delta-G solvation = -20120.086715 eV Core-core repulsion = 17007.886685 eV Total energy + Delta-G solvation = -3112.200030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62273 -39.79501 -37.85263 -36.92629 -35.38187 -32.76643 -31.65104 -31.32110 -29.68394 -27.68752 -26.94449 -23.88088 -23.27405 -22.62065 -21.35317 -19.47302 -17.96733 -17.88862 -16.88712 -16.55346 -16.42865 -16.31741 -15.95770 -15.18199 -14.81003 -14.62601 -14.50473 -14.21888 -13.69214 -13.48648 -13.12665 -12.98135 -12.83726 -12.67655 -12.40747 -12.23255 -12.11831 -12.03946 -11.72645 -11.50895 -11.31409 -11.23867 -10.91041 -9.68200 -9.36507 -9.29604 -8.71174 -8.41822 -6.27276 0.40380 0.49547 1.01565 1.19103 1.36873 1.48022 1.52205 1.65290 2.20483 2.73445 2.82246 2.92915 3.73141 4.12243 4.13459 4.29334 4.34812 4.46980 4.52001 4.56480 4.64286 4.67777 4.75595 4.95563 5.10757 5.16600 5.20431 5.37065 5.48309 5.58224 5.62592 5.71651 5.92904 5.97996 6.10016 6.18606 6.23010 6.53863 6.95935 6.99993 7.10740 8.35345 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.008640 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.298748 B = 3239.995300 C = 4741.146503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.128 3.872 4 C -0.320 4.320 5 C -0.044 4.044 6 C -0.212 4.212 7 C -0.001 4.001 8 C -0.124 4.124 9 C -0.114 4.114 10 C -0.121 4.121 11 C -0.126 4.126 12 C -0.043 4.043 13 Cl -0.078 7.078 14 C 0.145 3.855 15 C -0.446 4.446 16 H 0.070 0.930 17 C 0.048 3.952 18 N -0.806 5.806 19 Si 0.958 3.042 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.258 1.258 23 C -0.232 4.232 24 H 0.052 0.948 25 H 0.115 0.885 26 H 0.057 0.943 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.140 0.860 33 H 0.285 0.715 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 8.636 2.330 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.083 3.917 4 C -0.340 4.340 5 C -0.062 4.062 6 C -0.214 4.214 7 C -0.002 4.002 8 C -0.142 4.142 9 C -0.132 4.132 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.069 4.069 13 Cl -0.049 7.049 14 C 0.142 3.858 15 C -0.474 4.474 16 H 0.088 0.912 17 C -0.170 4.170 18 N -0.431 5.431 19 Si 0.779 3.221 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.181 1.181 23 C -0.252 4.252 24 H 0.070 0.930 25 H 0.133 0.867 26 H 0.076 0.924 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.174 0.826 31 H 0.178 0.822 32 H 0.157 0.843 33 H 0.096 0.904 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.289 8.136 2.047 8.696 hybrid contribution 0.496 -0.679 -0.320 0.900 sum -1.793 7.456 1.726 7.861 Atomic orbital electron populations 1.23118 0.77739 1.04403 1.01411 1.85963 1.22697 1.28548 1.89567 1.19123 0.92250 0.83771 0.96517 1.20602 0.98579 0.91804 1.22992 1.20593 0.93086 0.96188 0.96355 1.18653 0.92674 0.91325 1.18741 1.18768 0.95395 0.93354 0.92694 1.21475 1.01168 0.94536 0.97055 1.21437 0.96650 0.95694 0.99381 1.21409 0.99513 1.00417 0.92527 1.21222 1.00305 0.92131 1.00817 1.21420 1.02178 0.92705 0.90618 1.98353 1.96326 1.67086 1.43178 1.17350 0.93194 0.89236 0.86023 1.19394 0.91138 1.02212 1.34660 0.91222 1.26546 1.04504 0.93834 0.92070 1.69897 1.39861 1.10996 1.22308 0.85540 0.77721 0.79807 0.78998 1.18767 1.19437 1.18140 1.20508 0.90465 0.98741 1.15520 0.92983 0.86716 0.92406 0.85878 0.86636 0.85335 0.82584 0.82179 0.84264 0.90421 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.80 113.37 1.11 1.97 16 2 O -0.35 -15.75 10.48 -92.14 -0.97 -16.71 16 3 C 0.13 6.30 6.67 22.49 0.15 6.45 16 4 C -0.32 -14.10 9.02 22.50 0.20 -13.89 16 5 C -0.04 -1.93 9.71 22.43 0.22 -1.72 16 6 C -0.21 -10.06 4.71 -19.61 -0.09 -10.15 16 7 C 0.00 -0.06 4.37 -20.02 -0.09 -0.14 16 8 C -0.12 -4.22 9.75 22.54 0.22 -4.00 16 9 C -0.11 -3.01 10.03 22.24 0.22 -2.79 16 10 C -0.12 -3.10 10.04 22.35 0.22 -2.87 16 11 C -0.13 -4.00 9.82 22.26 0.22 -3.78 16 12 C -0.04 -1.71 5.68 22.60 0.13 -1.58 16 13 Cl -0.08 -3.45 26.16 -2.72 -0.07 -3.52 16 14 C 0.14 7.67 5.07 -21.13 -0.11 7.57 16 15 C -0.45 -23.30 6.68 23.36 0.16 -23.15 16 16 H 0.07 3.66 7.06 -2.91 -0.02 3.64 16 17 C 0.05 2.40 5.17 85.29 0.44 2.84 16 18 N -0.81 -42.57 10.90 21.84 0.24 -42.33 16 19 Si 0.96 39.00 29.59 68.60 2.03 41.03 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 C -0.23 -12.73 8.60 22.78 0.20 -12.54 16 24 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 25 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.06 1.63 7.64 -2.39 -0.02 1.61 16 27 H 0.12 4.59 6.25 -2.91 -0.02 4.57 16 28 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.16 2.79 8.06 -2.92 -0.02 2.77 16 32 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 34 H 0.10 6.00 6.14 -2.91 -0.02 5.98 16 Total: -1.00 -63.03 305.04 5.55 -57.48 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 1.12 Total: 21.82 kcal Atomic # 6 Polarization: -60.97 SS G_CDS: 3.20 Total: -57.77 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.24 Total: -42.33 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.97 Total: -16.71 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 17 Polarization: -3.45 SS G_CDS: -0.07 Total: -3.52 kcal Total: -63.03 5.55 -57.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222437621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.467 kcal (2) G-P(sol) polarization free energy of solvation -63.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds