Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 116.99935 * 2 1 4 4 C 1.38706 * 120.02501 * 359.97438 * 3 2 1 5 5 C 1.38772 * 120.53996 * 180.02562 * 4 3 2 6 6 C 1.36483 * 120.58068 * 359.97438 * 5 4 3 7 7 C 1.40773 * 120.02431 * 359.78817 * 6 5 4 8 8 C 1.41173 * 120.26402 * 180.23403 * 7 6 5 9 9 H 1.08005 * 119.99553 * 154.35040 * 8 7 6 10 10 C 1.39919 * 120.00648 * 334.34597 * 8 7 6 11 11 N 1.30872 * 120.00345 * 159.40697 * 10 8 7 12 12 Si 1.86800 * 119.99539 * 339.41009 * 10 8 7 13 13 H 1.48505 * 109.47263 * 95.66273 * 12 10 8 14 14 H 1.48502 * 109.46799 * 215.66012 * 12 10 8 15 15 H 1.48493 * 109.47372 * 335.66246 * 12 10 8 16 16 C 1.38878 * 120.02385 * 179.97438 * 3 2 1 17 17 O 1.35745 * 120.28216 * 359.95845 * 16 3 2 18 18 C 1.42902 * 116.99630 * 89.99844 * 17 16 3 19 19 H 1.09003 * 109.47089 * 329.99772 * 18 17 16 20 20 C 1.52995 * 109.47202 * 90.00361 * 18 17 16 21 21 F 1.39904 * 109.46875 * 294.99631 * 20 18 17 22 22 C 1.53002 * 109.47150 * 210.00066 * 18 17 16 23 23 Cl 1.80298 * 109.47184 * 64.99961 * 22 18 17 24 24 H 1.09002 * 109.47345 * 59.99515 * 1 2 3 25 25 H 1.08996 * 109.46953 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46919 * 299.99656 * 1 2 3 27 27 H 1.08008 * 119.72716 * 0.04157 * 4 3 2 28 28 H 1.08000 * 119.70465 * 180.02562 * 5 4 3 29 29 H 1.08008 * 119.98862 * 180.02562 * 6 5 4 30 30 H 0.96999 * 119.99779 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.47457 * 54.99766 * 20 18 17 32 32 H 1.09002 * 109.47487 * 175.00280 * 20 18 17 33 33 H 1.09005 * 109.46979 * 305.00256 * 22 18 17 34 34 H 1.09003 * 109.47450 * 185.00011 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2915 2.3754 -0.0005 5 6 1.9103 3.6175 -0.0011 6 6 3.2717 3.7150 -0.0006 7 6 4.0613 2.5496 0.0050 8 6 5.4699 2.6446 0.0106 9 1 6.0636 1.8404 0.4195 10 6 6.0967 3.7803 -0.5138 11 7 7.3246 4.0696 -0.1657 12 14 5.1806 4.8838 -1.7106 13 1 4.5678 6.0161 -0.9704 14 1 6.1298 5.4108 -2.7238 15 1 4.1159 4.1021 -2.3891 16 6 3.4333 1.2851 0.0005 17 8 4.1787 0.1506 0.0019 18 6 4.5354 -0.3927 -1.2707 19 1 3.7614 -0.1507 -1.9990 20 6 5.8683 0.2054 -1.7251 21 9 5.7140 1.5793 -1.9394 22 6 4.6709 -1.9124 -1.1566 23 17 3.0647 -2.6313 -0.7644 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2131 2.3142 -0.0003 28 1 1.3094 4.5149 -0.0011 29 1 3.7433 4.6867 -0.0006 30 1 7.7590 4.8571 -0.5289 31 1 6.6220 0.0401 -0.9553 32 1 6.1844 -0.2735 -2.6519 33 1 5.3807 -2.1555 -0.3658 34 1 5.0289 -2.3175 -2.1032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225841935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -100.603372 kcal Electronic energy + Delta-G solvation = -22090.189236 eV Core-core repulsion = 18543.681926 eV Total energy + Delta-G solvation = -3546.507310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.61160 -39.17874 -37.34029 -36.19773 -35.35499 -33.49307 -31.87953 -30.01242 -28.51129 -26.52457 -25.76502 -24.95317 -21.72160 -21.00992 -20.36349 -17.90998 -17.35129 -15.88775 -15.74465 -15.43196 -15.28292 -14.86550 -14.60192 -14.49230 -13.95709 -13.65500 -13.36485 -13.22126 -12.90168 -12.59318 -12.21452 -11.80447 -11.65474 -11.48191 -11.17499 -10.88984 -10.69993 -10.58333 -10.31330 -10.15829 -10.01396 -9.90882 -9.75550 -9.54390 -9.14831 -8.64776 -7.51480 -7.04575 -7.00258 -4.36107 2.45494 2.59914 2.72643 3.11844 3.21817 3.35315 3.97949 4.16366 4.31408 4.56575 4.98201 5.30390 5.32020 5.45099 5.49276 5.60246 5.61913 5.67891 5.79956 5.87110 6.01992 6.08454 6.33388 6.44966 6.59236 6.74432 6.82966 7.12260 7.47929 7.59984 7.71455 7.83946 8.21214 8.27221 8.50451 8.73499 9.01828 9.96218 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.008566 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.543324 B = 3268.015077 C = 4494.028066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.305 6.305 3 C 0.158 3.842 4 C -0.337 4.337 5 C -0.043 4.043 6 C -0.260 4.260 7 C 0.102 3.898 8 C -0.372 4.372 9 H 0.095 0.905 10 C 0.090 3.910 11 N -0.792 5.792 12 Si 0.916 3.084 13 H -0.274 1.274 14 H -0.294 1.294 15 H -0.242 1.242 16 C -0.065 4.065 17 O -0.287 6.287 18 C 0.046 3.954 19 H 0.071 0.929 20 C 0.047 3.953 21 F -0.175 7.175 22 C -0.025 4.025 23 Cl -0.169 7.169 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.287 0.713 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 -6.994 -4.065 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C 0.112 3.888 4 C -0.357 4.357 5 C -0.061 4.061 6 C -0.279 4.279 7 C 0.097 3.903 8 C -0.399 4.399 9 H 0.113 0.887 10 C -0.131 4.131 11 N -0.415 5.415 12 Si 0.743 3.257 13 H -0.201 1.201 14 H -0.221 1.221 15 H -0.165 1.165 16 C -0.111 4.111 17 O -0.203 6.203 18 C -0.011 4.011 19 H 0.089 0.911 20 C -0.009 4.009 21 F -0.156 7.156 22 C -0.088 4.088 23 Cl -0.143 7.143 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.104 -7.199 -3.871 9.146 hybrid contribution -0.626 0.922 -0.745 1.341 sum -4.729 -6.277 -4.617 9.115 Atomic orbital electron populations 1.22788 0.81030 1.01879 1.00466 1.86190 1.19087 1.27641 1.88910 1.19211 0.91265 0.83479 0.94810 1.20228 0.97467 0.92043 1.25992 1.20095 0.94343 0.95523 0.96180 1.20578 0.93528 0.97201 1.16572 1.17571 0.93595 0.89502 0.89612 1.19318 0.90288 1.01752 1.28521 0.88733 1.26195 0.94742 0.96595 0.95582 1.69712 1.13212 1.24024 1.34539 0.86279 0.79784 0.79565 0.80068 1.20091 1.22134 1.16481 1.17520 0.84670 0.85694 1.23192 1.86184 1.70553 1.39586 1.23947 1.23071 0.96724 0.91016 0.90326 0.91071 1.22234 0.98277 0.79628 1.00763 1.93024 1.96657 1.29950 1.95964 1.24239 0.86909 0.94085 1.03600 1.98713 1.34530 1.85343 1.95699 0.93769 0.89940 0.93637 0.88162 0.88825 0.88142 0.90279 0.90660 0.92147 0.88408 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.31 -6.18 9.88 -34.30 -0.34 -6.52 16 3 C 0.16 3.58 6.69 -39.17 -0.26 3.31 16 4 C -0.34 -7.28 9.05 -39.21 -0.35 -7.63 16 5 C -0.04 -0.95 9.96 -40.02 -0.40 -1.35 16 6 C -0.26 -6.33 7.16 -39.26 -0.28 -6.61 16 7 C 0.10 2.58 4.70 -106.70 -0.50 2.08 16 8 C -0.37 -9.67 5.63 -37.84 -0.21 -9.89 16 9 H 0.09 2.60 7.27 -52.48 -0.38 2.22 16 10 C 0.09 2.28 4.65 -17.33 -0.08 2.20 16 11 N -0.79 -20.26 13.93 55.55 0.77 -19.49 16 12 Si 0.92 21.00 23.84 -169.99 -4.05 16.94 16 13 H -0.27 -6.11 6.65 56.52 0.38 -5.73 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.24 -5.75 6.86 56.52 0.39 -5.37 16 16 C -0.07 -1.58 5.47 -38.22 -0.21 -1.79 16 17 O -0.29 -6.44 8.70 -33.48 -0.29 -6.73 16 18 C 0.05 0.84 2.66 -26.73 -0.07 0.77 16 19 H 0.07 1.38 7.91 -51.93 -0.41 0.97 16 20 C 0.05 0.82 6.48 37.16 0.24 1.07 16 21 F -0.18 -3.93 11.13 2.25 0.03 -3.91 16 22 C -0.03 -0.36 6.33 37.16 0.24 -0.12 16 23 Cl -0.17 -2.68 28.59 -51.86 -1.48 -4.17 16 24 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 27 H 0.10 1.89 6.27 -52.48 -0.33 1.56 16 28 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.10 2.43 4.34 -52.48 -0.23 2.20 16 30 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 31 H 0.08 1.32 7.99 -51.93 -0.42 0.90 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -28.74 293.31 -5.70 -34.43 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.85 Total: 1.44 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.90 Total: -16.44 kcal Atomic # 7 Polarization: -20.26 SS G_CDS: 0.77 Total: -19.49 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.63 Total: -13.24 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.03 Total: -3.91 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.05 Total: 16.94 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -1.48 Total: -4.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.74 -5.70 -34.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.169 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds