Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 116.99935 * 2 1 4 4 C 1.38706 * 120.02501 * 359.97438 * 3 2 1 5 5 C 1.38772 * 120.53996 * 180.02562 * 4 3 2 6 6 C 1.36483 * 120.58068 * 359.97438 * 5 4 3 7 7 C 1.40773 * 120.02431 * 359.78817 * 6 5 4 8 8 C 1.41173 * 120.26402 * 180.23403 * 7 6 5 9 9 H 1.08005 * 119.99553 * 154.35040 * 8 7 6 10 10 C 1.39919 * 120.00648 * 334.34597 * 8 7 6 11 11 N 1.30872 * 120.00345 * 159.40697 * 10 8 7 12 12 Si 1.86800 * 119.99539 * 339.41009 * 10 8 7 13 13 H 1.48505 * 109.47263 * 95.66273 * 12 10 8 14 14 H 1.48502 * 109.46799 * 215.66012 * 12 10 8 15 15 H 1.48493 * 109.47372 * 335.66246 * 12 10 8 16 16 C 1.38878 * 120.02385 * 179.97438 * 3 2 1 17 17 O 1.35745 * 120.28216 * 359.95845 * 16 3 2 18 18 C 1.42902 * 116.99630 * 89.99844 * 17 16 3 19 19 H 1.09003 * 109.47089 * 329.99772 * 18 17 16 20 20 C 1.52995 * 109.47202 * 90.00361 * 18 17 16 21 21 F 1.39904 * 109.46875 * 294.99631 * 20 18 17 22 22 C 1.53002 * 109.47150 * 210.00066 * 18 17 16 23 23 Cl 1.80298 * 109.47184 * 64.99961 * 22 18 17 24 24 H 1.09002 * 109.47345 * 59.99515 * 1 2 3 25 25 H 1.08996 * 109.46953 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46919 * 299.99656 * 1 2 3 27 27 H 1.08008 * 119.72716 * 0.04157 * 4 3 2 28 28 H 1.08000 * 119.70465 * 180.02562 * 5 4 3 29 29 H 1.08008 * 119.98862 * 180.02562 * 6 5 4 30 30 H 0.96999 * 119.99779 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.47457 * 54.99766 * 20 18 17 32 32 H 1.09002 * 109.47487 * 175.00280 * 20 18 17 33 33 H 1.09005 * 109.46979 * 305.00256 * 22 18 17 34 34 H 1.09003 * 109.47450 * 185.00011 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2915 2.3754 -0.0005 5 6 1.9103 3.6175 -0.0011 6 6 3.2717 3.7150 -0.0006 7 6 4.0613 2.5496 0.0050 8 6 5.4699 2.6446 0.0106 9 1 6.0636 1.8404 0.4195 10 6 6.0967 3.7803 -0.5138 11 7 7.3246 4.0696 -0.1657 12 14 5.1806 4.8838 -1.7106 13 1 4.5678 6.0161 -0.9704 14 1 6.1298 5.4108 -2.7238 15 1 4.1159 4.1021 -2.3891 16 6 3.4333 1.2851 0.0005 17 8 4.1787 0.1506 0.0019 18 6 4.5354 -0.3927 -1.2707 19 1 3.7614 -0.1507 -1.9990 20 6 5.8683 0.2054 -1.7251 21 9 5.7140 1.5793 -1.9394 22 6 4.6709 -1.9124 -1.1566 23 17 3.0647 -2.6313 -0.7644 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2131 2.3142 -0.0003 28 1 1.3094 4.5149 -0.0011 29 1 3.7433 4.6867 -0.0006 30 1 7.7590 4.8571 -0.5289 31 1 6.6220 0.0401 -0.9553 32 1 6.1844 -0.2735 -2.6519 33 1 5.3807 -2.1555 -0.3658 34 1 5.0289 -2.3175 -2.1032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -117.748610 kcal Electronic energy + Delta-G solvation = -22090.932709 eV Core-core repulsion = 18543.681926 eV Total energy + Delta-G solvation = -3547.250783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.19193 -40.84977 -38.90597 -37.84840 -36.64236 -35.33086 -33.32694 -31.81446 -30.13304 -27.99074 -27.07521 -26.71590 -23.32278 -22.70491 -21.99652 -19.66019 -18.99437 -17.58007 -17.35053 -17.03804 -16.93448 -16.31436 -16.13422 -16.06149 -15.52279 -15.25141 -14.96985 -14.54707 -14.30457 -14.18995 -13.89165 -13.44933 -13.33510 -13.10357 -12.70996 -12.45024 -12.37553 -12.24245 -11.87097 -11.70623 -11.55141 -11.35272 -11.19966 -11.18137 -10.93142 -10.27643 -9.32652 -8.90977 -8.73154 -6.25899 0.68040 0.91919 1.28029 1.40620 1.43065 1.51668 2.15256 2.58324 2.70981 2.93951 3.56523 3.73896 3.94474 4.07892 4.21745 4.27812 4.31067 4.47432 4.48890 4.50157 4.61011 4.66098 4.71596 4.80746 5.01384 5.04978 5.13315 5.37439 5.68337 5.81220 5.96702 6.00805 6.32314 6.55086 6.74232 6.83986 7.27996 8.14971 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.008566 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.543324 B = 3268.015077 C = 4494.028066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.148 3.852 4 C -0.326 4.326 5 C -0.046 4.046 6 C -0.283 4.283 7 C 0.085 3.915 8 C -0.389 4.389 9 H 0.063 0.937 10 C 0.066 3.934 11 N -0.829 5.829 12 Si 0.957 3.043 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.257 1.257 16 C -0.077 4.077 17 O -0.307 6.307 18 C 0.048 3.952 19 H 0.057 0.943 20 C 0.038 3.962 21 F -0.203 7.203 22 C -0.018 4.018 23 Cl -0.182 7.182 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.055 0.945 27 H 0.133 0.867 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.294 0.706 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.364 -7.805 -4.966 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.102 3.898 4 C -0.346 4.346 5 C -0.064 4.064 6 C -0.303 4.303 7 C 0.081 3.919 8 C -0.417 4.417 9 H 0.081 0.919 10 C -0.152 4.152 11 N -0.454 5.454 12 Si 0.782 3.218 13 H -0.191 1.191 14 H -0.210 1.210 15 H -0.181 1.181 16 C -0.122 4.122 17 O -0.224 6.224 18 C -0.009 4.009 19 H 0.076 0.924 20 C -0.017 4.017 21 F -0.184 7.184 22 C -0.081 4.081 23 Cl -0.155 7.155 24 H 0.074 0.926 25 H 0.127 0.873 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.145 0.855 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.051 -8.015 -4.768 11.117 hybrid contribution -0.223 0.967 -0.443 1.086 sum -6.274 -7.048 -5.211 10.779 Atomic orbital electron populations 1.23127 0.78347 1.04108 1.01440 1.86172 1.21785 1.26405 1.88537 1.19325 0.91092 0.84857 0.94512 1.20667 0.99162 0.91375 1.23357 1.20484 0.93797 0.97241 0.94891 1.20706 0.94713 0.96746 1.18088 1.17816 0.93602 0.90682 0.89820 1.19044 0.90498 1.01553 1.30576 0.91865 1.26594 0.95149 0.97231 0.96194 1.69722 1.14222 1.25251 1.36192 0.85650 0.78714 0.78487 0.78900 1.19089 1.21046 1.18139 1.17802 0.85901 0.85892 1.22646 1.86070 1.70666 1.39037 1.26622 1.23209 0.96304 0.93333 0.88087 0.92447 1.22526 0.98030 0.78206 1.02959 1.92952 1.96775 1.32553 1.96155 1.24387 0.86313 0.91098 1.06300 1.98712 1.35693 1.85254 1.95883 0.92623 0.87301 0.92638 0.84891 0.85486 0.88484 0.89556 0.91161 0.87445 0.87427 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.32 -12.09 9.88 -79.73 -0.79 -12.88 16 3 C 0.15 6.50 6.69 22.54 0.15 6.65 16 4 C -0.33 -13.16 9.05 22.51 0.20 -12.96 16 5 C -0.05 -1.93 9.96 21.99 0.22 -1.72 16 6 C -0.28 -13.72 7.16 22.48 0.16 -13.56 16 7 C 0.08 4.38 4.70 -21.21 -0.10 4.28 16 8 C -0.39 -21.01 5.63 23.40 0.13 -20.88 16 9 H 0.06 3.69 7.27 -2.91 -0.02 3.67 16 10 C 0.07 3.42 4.65 85.24 0.40 3.82 16 11 N -0.83 -43.82 13.93 21.82 0.30 -43.52 16 12 Si 0.96 43.59 23.84 68.60 1.64 45.22 16 13 H -0.26 -11.47 6.65 99.48 0.66 -10.81 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.26 -12.24 6.86 99.48 0.68 -11.56 16 16 C -0.08 -3.74 5.47 23.15 0.13 -3.61 16 17 O -0.31 -13.88 8.70 -76.80 -0.67 -14.55 16 18 C 0.05 1.71 2.66 30.59 0.08 1.79 16 19 H 0.06 2.19 7.91 -2.39 -0.02 2.17 16 20 C 0.04 1.33 6.48 71.98 0.47 1.79 16 21 F -0.20 -9.32 11.13 44.97 0.50 -8.82 16 22 C -0.02 -0.48 6.33 71.98 0.46 -0.02 16 23 Cl -0.18 -5.41 28.59 -2.72 -0.08 -5.48 16 24 H 0.06 1.41 7.66 -2.39 -0.02 1.39 16 25 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.05 1.42 7.66 -2.39 -0.02 1.40 16 27 H 0.13 4.43 6.27 -2.91 -0.02 4.41 16 28 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 29 H 0.10 4.68 4.34 -2.91 -0.01 4.67 16 30 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 31 H 0.07 2.49 7.99 -2.39 -0.02 2.47 16 32 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -63.83 293.31 5.37 -58.47 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.05 Total: 14.18 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 3.41 Total: -32.63 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.30 Total: -43.52 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.46 Total: -27.43 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.50 Total: -8.82 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.64 Total: 45.22 kcal Atomic # 17 Polarization: -5.41 SS G_CDS: -0.08 Total: -5.48 kcal Total: -63.83 5.37 -58.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.282 kcal (2) G-P(sol) polarization free energy of solvation -63.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds