Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34732 * 117.00353 * 2 1 4 4 O 1.21490 * 120.00036 * 0.02562 * 3 2 1 5 5 C 1.47591 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.41103 * 125.99073 * 180.02562 * 5 3 2 7 7 C 1.35572 * 107.80344 * 179.97438 * 6 5 3 8 8 O 1.35763 * 126.08177 * 179.97438 * 7 6 5 9 9 C 1.42900 * 117.00100 * 359.31475 * 8 7 6 10 10 H 1.09005 * 109.46882 * 23.61141 * 9 8 7 11 11 C 1.50703 * 109.47607 * 143.60788 * 9 8 7 12 12 H 1.07998 * 119.99563 * 1.81300 * 11 9 8 13 13 C 1.37867 * 120.00053 * 181.81102 * 11 9 8 14 14 N 1.31520 * 119.99894 * 196.03483 * 13 11 9 15 15 Si 1.86797 * 120.00322 * 16.03780 * 13 11 9 16 16 H 1.48505 * 109.47307 * 87.32572 * 15 13 11 17 17 H 1.48494 * 109.47312 * 207.32723 * 15 13 11 18 18 H 1.48500 * 109.46849 * 327.32995 * 15 13 11 19 19 C 1.52999 * 109.47108 * 263.61353 * 9 8 7 20 20 Cl 1.80295 * 109.47173 * 64.57088 * 19 9 8 21 21 N 1.35854 * 107.83892 * 0.26313 * 7 6 5 22 22 C 1.46496 * 125.94445 * 179.72248 * 21 7 6 23 23 N 1.31915 * 125.98992 * 359.97438 * 5 3 2 24 24 H 1.09001 * 109.46945 * 59.99995 * 1 2 3 25 25 H 1.08994 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46870 * 299.99969 * 1 2 3 27 27 H 1.08008 * 126.09736 * 0.02562 * 6 5 3 28 28 H 0.97001 * 120.00164 * 180.02562 * 14 13 11 29 29 H 1.09004 * 109.47298 * 184.57119 * 19 9 8 30 30 H 1.09004 * 109.46893 * 304.56992 * 19 9 8 31 31 H 1.09004 * 109.47779 * 94.95539 * 22 21 7 32 32 H 1.09004 * 109.47630 * 214.95781 * 22 21 7 33 33 H 1.09006 * 109.47282 * 334.95772 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2194 0.0005 5 6 3.5376 1.2776 0.0006 6 6 4.3060 2.4611 0.0011 7 6 5.6143 2.1058 0.0021 8 8 6.6735 2.9552 0.0024 9 6 6.3831 4.3543 -0.0136 10 1 5.3839 4.5226 0.3883 11 6 7.3940 5.0870 0.8305 12 1 8.1968 4.5427 1.3055 13 6 7.2939 6.4520 0.9963 14 7 8.3201 7.1359 1.4533 15 14 5.7007 7.3301 0.5720 16 1 4.7973 7.3137 1.7505 17 1 5.9957 8.7356 0.1940 18 1 5.0426 6.6392 -0.5659 19 6 6.4482 4.8722 -1.4518 20 17 5.1497 4.0933 -2.4304 21 7 5.6771 0.7488 -0.0038 22 6 6.9016 -0.0554 -0.0107 23 7 4.3676 0.2522 0.0016 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9205 3.4700 0.0016 28 1 8.2496 8.0962 1.5703 29 1 6.3071 5.9531 -1.4555 30 1 7.4208 4.6313 -1.8810 31 1 7.1597 -0.3334 1.0112 32 1 6.7414 -0.9564 -0.6028 33 1 7.7152 0.5252 -0.4456 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226424174.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -59.156750 kcal Electronic energy + Delta-G solvation = -20928.449579 eV Core-core repulsion = 17403.659491 eV Total energy + Delta-G solvation = -3524.790088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.62845 -41.24359 -39.57063 -37.59358 -36.81689 -35.35956 -34.42829 -32.38754 -30.53528 -29.26748 -27.77039 -27.18879 -24.89944 -23.70779 -21.75649 -21.23937 -19.85657 -18.79743 -18.27466 -17.79159 -17.60166 -17.16020 -16.95324 -16.22197 -15.70790 -15.53744 -15.04102 -14.86185 -14.72422 -14.50307 -14.43873 -13.74889 -13.49176 -13.30248 -13.10402 -13.02597 -12.76431 -12.60008 -12.25652 -11.98231 -11.91154 -11.85898 -11.75873 -11.30817 -11.15627 -10.79623 -10.25080 -9.36957 -8.53314 -6.60587 -0.03759 0.80576 1.03286 1.25661 1.33414 1.37926 1.39403 1.48653 1.97405 2.16351 2.46780 2.82103 3.23185 3.83834 3.95054 4.10021 4.14809 4.28207 4.30875 4.35181 4.42925 4.45182 4.55613 4.69591 4.71573 4.84825 5.10246 5.13437 5.17912 5.36935 5.89033 6.07465 6.42048 6.54791 6.61599 7.02172 8.61361 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.005724 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.280645 B = 4890.503534 C = 5472.251010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.559 3.441 4 O -0.513 6.513 5 C 0.049 3.951 6 C -0.294 4.294 7 C 0.295 3.705 8 O -0.296 6.296 9 C 0.211 3.789 10 H 0.046 0.954 11 C -0.547 4.547 12 H 0.055 0.945 13 C 0.050 3.950 14 N -0.908 5.908 15 Si 0.902 3.098 16 H -0.268 1.268 17 H -0.268 1.268 18 H -0.225 1.225 19 C -0.050 4.050 20 Cl -0.204 7.204 21 N -0.352 5.352 22 C 0.092 3.908 23 N -0.233 5.233 24 H 0.067 0.933 25 H 0.139 0.861 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.279 0.721 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -12.374 -4.935 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.401 3.599 4 O -0.400 6.400 5 C -0.114 4.114 6 C -0.324 4.324 7 C 0.124 3.876 8 O -0.203 6.203 9 C 0.154 3.846 10 H 0.064 0.936 11 C -0.584 4.584 12 H 0.073 0.927 13 C -0.154 4.154 14 N -0.543 5.543 15 Si 0.723 3.277 16 H -0.193 1.193 17 H -0.193 1.193 18 H -0.148 1.148 19 C -0.112 4.112 20 Cl -0.178 7.178 21 N -0.147 5.147 22 C -0.047 4.047 23 N -0.066 5.066 24 H 0.086 0.914 25 H 0.157 0.843 26 H 0.086 0.914 27 H 0.168 0.832 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.048 -13.227 -4.956 16.775 hybrid contribution -0.530 1.844 0.102 1.921 sum -9.578 -11.384 -4.855 15.649 Atomic orbital electron populations 1.23724 0.73469 1.06324 1.03099 1.86629 1.25806 1.30482 1.83334 1.19571 0.86041 0.82048 0.72262 1.90848 1.65786 1.36909 1.46421 1.20556 0.91310 0.92426 1.07095 1.20828 0.90339 0.99440 1.21838 1.19004 0.87906 0.84012 0.96635 1.85862 1.28334 1.18454 1.87692 1.20533 0.98247 0.73770 0.92023 0.93633 1.20707 1.13000 0.92746 1.31984 0.92720 1.25425 0.98927 0.97010 0.94006 1.69990 1.30811 1.08890 1.44654 0.86589 0.80625 0.79372 0.81084 1.19273 1.19307 1.14768 1.25989 0.92229 1.00317 0.92700 1.98685 1.58493 1.84683 1.75969 1.48874 1.06815 1.01521 1.57523 1.22353 0.80433 0.96469 1.05483 1.77754 0.85801 1.19236 1.23783 0.91410 0.84275 0.91355 0.83215 0.91124 0.87620 0.87736 0.88787 0.86592 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.35 -9.45 10.57 -56.42 -0.60 -10.04 16 3 C 0.56 18.65 7.97 70.29 0.56 19.21 16 4 O -0.51 -18.87 16.69 19.87 0.33 -18.54 16 5 C 0.05 1.77 7.12 42.30 0.30 2.07 16 6 C -0.29 -11.39 7.84 22.36 0.18 -11.22 16 7 C 0.29 11.22 7.03 83.45 0.59 11.81 16 8 O -0.30 -12.34 9.62 -90.89 -0.87 -13.21 16 9 C 0.21 9.24 1.79 29.85 0.05 9.29 16 10 H 0.05 2.03 4.89 -2.38 -0.01 2.02 16 11 C -0.55 -28.41 9.35 25.60 0.24 -28.17 16 12 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 13 C 0.05 2.58 5.32 84.65 0.45 3.03 16 14 N -0.91 -50.49 13.96 21.44 0.30 -50.19 16 15 Si 0.90 38.10 25.82 68.60 1.77 39.87 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.22 -8.64 5.34 99.48 0.53 -8.11 16 19 C -0.05 -1.93 5.61 71.98 0.40 -1.53 16 20 Cl -0.20 -7.46 26.34 -2.72 -0.07 -7.53 16 21 N -0.35 -11.44 4.03 -480.57 -1.94 -13.38 16 22 C 0.09 2.01 11.44 127.77 1.46 3.47 16 23 N -0.23 -7.88 12.61 -48.47 -0.61 -8.49 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.15 6.06 6.48 -2.91 -0.02 6.04 16 28 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.11 4.08 4.50 -2.39 -0.01 4.07 16 30 H 0.10 3.91 8.14 -2.38 -0.02 3.89 16 31 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.10 2.13 8.04 -2.38 -0.02 2.11 16 Total: -1.00 -63.52 302.32 4.71 -58.81 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.97 Total: 13.09 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.43 Total: 9.61 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -2.25 Total: -72.06 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.14 Total: -41.79 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.77 Total: 39.87 kcal Atomic # 17 Polarization: -7.46 SS G_CDS: -0.07 Total: -7.53 kcal Total: -63.52 4.71 -58.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226424174.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.349 kcal (2) G-P(sol) polarization free energy of solvation -63.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds