Wall clock time and date at job start Tue Mar 31 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47665 * 2 1 4 4 C 1.36037 * 117.00513 * 180.02562 * 3 2 1 5 5 C 1.38629 * 120.00322 * 0.02562 * 4 3 2 6 6 C 1.38173 * 120.02155 * 179.97438 * 5 4 3 7 7 C 1.38706 * 120.03638 * 0.02685 * 6 5 4 8 8 O 1.35977 * 119.98897 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00110 * 356.49747 * 8 7 6 10 10 H 1.09001 * 109.47187 * 27.03049 * 9 8 7 11 11 C 1.50700 * 109.46973 * 147.02453 * 9 8 7 12 12 H 1.08003 * 120.00082 * 0.02562 * 11 9 8 13 13 C 1.37882 * 120.00210 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99656 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00179 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46938 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46922 * 120.00088 * 15 13 11 18 18 H 1.48498 * 109.46895 * 239.99921 * 15 13 11 19 19 C 1.52992 * 109.47637 * 267.02708 * 9 8 7 20 20 Cl 1.80307 * 109.47108 * 64.99948 * 19 9 8 21 21 C 1.38685 * 120.01392 * 359.69778 * 7 6 5 22 22 C 1.38312 * 119.97463 * 0.55613 * 21 7 6 23 23 F 1.35106 * 120.01413 * 179.74799 * 22 21 7 24 24 H 1.09000 * 109.46965 * 60.00014 * 1 2 3 25 25 H 1.08996 * 109.47445 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46813 * 300.00406 * 1 2 3 27 27 H 1.09000 * 109.47029 * 239.99213 * 2 1 3 28 28 H 1.09000 * 109.46965 * 119.99985 * 2 1 3 29 29 H 1.08000 * 119.98956 * 0.02562 * 5 4 3 30 30 H 1.07991 * 119.98115 * 180.02562 * 6 5 4 31 31 H 0.97000 * 120.00009 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.47595 * 185.00074 * 19 9 8 33 33 H 1.08999 * 109.47271 * 305.00258 * 19 9 8 34 34 H 1.08004 * 120.00890 * 180.29474 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3551 1.5254 -0.0005 5 6 4.1996 0.4261 -0.0016 6 6 5.5695 0.6067 -0.0027 7 6 6.1009 1.8879 -0.0022 8 8 7.4491 2.0645 -0.0038 9 6 8.2576 0.8886 0.0718 10 1 7.7114 0.0445 -0.3492 11 6 9.5297 1.1027 -0.7072 12 1 9.7036 2.0429 -1.2095 13 6 10.4716 0.0983 -0.7788 14 7 10.2596 -1.0467 -0.1677 15 14 12.0488 0.3640 -1.7439 16 1 12.0450 1.7272 -2.3328 17 1 13.2149 0.2208 -0.8357 18 1 12.1403 -0.6447 -2.8299 19 6 8.5983 0.5970 1.5346 20 17 7.0884 0.1965 2.4351 21 6 5.2574 2.9887 -0.0069 22 6 3.8861 2.8086 -0.0005 23 9 3.0637 3.8805 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7867 -0.5719 -0.0024 30 1 6.2268 -0.2502 -0.0039 31 1 10.9220 -1.7535 -0.2183 32 1 9.2867 -0.2465 1.5862 33 1 9.0654 1.4749 1.9808 34 1 5.6713 3.9863 -0.0113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228358101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:28 Heat of formation + Delta-G solvation = -112.019166 kcal Electronic energy + Delta-G solvation = -20618.843265 eV Core-core repulsion = 17071.840929 eV Total energy + Delta-G solvation = -3547.002336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.47553 -39.91491 -38.64021 -36.11029 -34.86582 -33.47678 -31.75735 -30.59296 -29.47625 -27.97504 -25.40190 -24.11362 -22.85449 -21.58362 -20.60000 -18.39291 -17.29646 -17.13386 -16.27478 -16.18493 -15.58946 -15.10013 -14.98258 -14.46887 -14.30595 -13.87650 -13.69733 -13.16347 -13.00758 -12.84047 -12.51624 -12.19693 -12.12542 -11.77831 -11.59820 -11.36614 -11.21883 -11.07088 -10.95926 -10.70381 -10.39082 -10.27917 -9.65027 -9.44382 -9.08753 -8.74146 -8.53427 -7.17947 -6.50256 -4.57802 1.47801 1.77573 3.07520 3.17578 3.22680 3.26650 3.33097 3.89888 4.00475 4.23084 4.68524 4.86036 4.86525 4.89257 5.15353 5.18580 5.37359 5.46921 5.59871 5.69136 5.76866 5.88381 5.98685 6.11941 6.19731 6.26467 6.50850 6.65669 6.82437 6.88673 7.08488 7.47450 7.56423 7.68495 8.22410 8.60153 9.10449 10.56953 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023164 B = 0.004397 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.481793 B = 6366.094672 C = 6611.422650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.315 6.315 4 C 0.040 3.960 5 C -0.142 4.142 6 C -0.162 4.162 7 C 0.155 3.845 8 O -0.306 6.306 9 C 0.205 3.795 10 H 0.052 0.948 11 C -0.522 4.522 12 H 0.078 0.922 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.917 3.083 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.037 4.037 20 Cl -0.241 7.241 21 C -0.170 4.170 22 C 0.101 3.899 23 F -0.137 7.137 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.272 0.728 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 0.030 0.902 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.230 6.230 4 C -0.005 4.005 5 C -0.160 4.160 6 C -0.181 4.181 7 C 0.107 3.893 8 O -0.219 6.219 9 C 0.150 3.850 10 H 0.070 0.930 11 C -0.559 4.559 12 H 0.096 0.904 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.743 3.257 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.099 4.099 20 Cl -0.215 7.215 21 C -0.189 4.189 22 C 0.081 3.919 23 F -0.115 7.115 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.165 0.835 31 H 0.082 0.918 32 H 0.152 0.848 33 H 0.094 0.906 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.278 0.172 0.993 11.323 hybrid contribution 0.769 -0.341 -0.260 0.881 sum -10.509 -0.168 0.733 10.535 Atomic orbital electron populations 1.21752 0.93034 1.02559 1.03379 1.22721 0.95559 0.82424 1.01359 1.86065 1.18292 1.28710 1.89980 1.18636 0.83018 0.92686 1.06121 1.20824 0.93344 0.97281 1.04601 1.21424 0.95156 0.97835 1.03654 1.18625 0.85031 0.92059 0.93580 1.86162 1.11956 1.37574 1.86226 1.20582 0.90172 0.83055 0.91204 0.93037 1.21063 1.01143 1.02069 1.31670 0.90381 1.24983 0.99097 0.94417 0.95424 1.69799 1.36040 1.04527 1.42240 0.86114 0.81336 0.78794 0.79452 1.19219 1.20494 1.20474 1.25790 0.85799 1.04794 0.93525 1.98645 1.46670 1.95724 1.80477 1.20033 0.89570 0.99675 1.09644 1.16419 0.86998 0.80671 1.07852 1.91454 1.71796 1.53926 1.94355 0.91636 0.90563 0.91654 0.92152 0.92174 0.85028 0.83524 0.91800 0.84785 0.90573 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.62 5.46 37.16 0.20 0.82 16 3 O -0.32 -4.89 10.00 -19.86 -0.20 -5.09 16 4 C 0.04 0.68 6.69 -39.20 -0.26 0.42 16 5 C -0.14 -2.31 9.03 -39.46 -0.36 -2.67 16 6 C -0.16 -3.02 7.04 -39.43 -0.28 -3.30 16 7 C 0.15 3.08 5.96 -39.24 -0.23 2.85 16 8 O -0.31 -6.84 9.73 -19.67 -0.19 -7.03 16 9 C 0.20 4.77 2.19 -27.89 -0.06 4.71 16 10 H 0.05 1.25 5.39 -51.93 -0.28 0.97 16 11 C -0.52 -13.14 8.89 -34.44 -0.31 -13.45 16 12 H 0.08 1.99 7.81 -52.48 -0.41 1.58 16 13 C 0.06 1.58 5.29 -17.82 -0.09 1.48 16 14 N -0.89 -22.32 11.30 55.43 0.63 -21.70 16 15 Si 0.92 19.35 29.54 -169.99 -5.02 14.33 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.04 -0.80 6.17 37.15 0.23 -0.57 16 20 Cl -0.24 -4.79 25.60 -51.86 -1.33 -6.12 16 21 C -0.17 -3.09 9.96 -39.39 -0.39 -3.48 16 22 C 0.10 1.79 7.31 -39.32 -0.29 1.50 16 23 F -0.14 -2.40 17.11 2.25 0.04 -2.37 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 29 H 0.13 1.79 6.29 -52.49 -0.33 1.46 16 30 H 0.15 2.87 5.10 -52.49 -0.27 2.60 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.13 3.15 5.96 -51.93 -0.31 2.84 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 34 H 0.14 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -25.95 303.68 -6.60 -32.55 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.64 Total: 3.46 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.46 Total: -12.62 kcal Atomic # 7 Polarization: -22.32 SS G_CDS: 0.63 Total: -21.70 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.39 Total: -12.12 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 17 Polarization: -4.79 SS G_CDS: -1.33 Total: -6.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -25.95 -6.60 -32.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228358101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.469 kcal (2) G-P(sol) polarization free energy of solvation -25.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds