Wall clock time and date at job start Tue Mar 31 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47665 * 2 1 4 4 C 1.36037 * 117.00513 * 180.02562 * 3 2 1 5 5 C 1.38629 * 120.00322 * 0.02562 * 4 3 2 6 6 C 1.38173 * 120.02155 * 179.97438 * 5 4 3 7 7 C 1.38706 * 120.03638 * 0.02685 * 6 5 4 8 8 O 1.35977 * 119.98897 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00110 * 356.49747 * 8 7 6 10 10 H 1.09001 * 109.47187 * 27.03049 * 9 8 7 11 11 C 1.50700 * 109.46973 * 147.02453 * 9 8 7 12 12 H 1.08003 * 120.00082 * 0.02562 * 11 9 8 13 13 C 1.37882 * 120.00210 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99656 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00179 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46938 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46922 * 120.00088 * 15 13 11 18 18 H 1.48498 * 109.46895 * 239.99921 * 15 13 11 19 19 C 1.52992 * 109.47637 * 267.02708 * 9 8 7 20 20 Cl 1.80307 * 109.47108 * 64.99948 * 19 9 8 21 21 C 1.38685 * 120.01392 * 359.69778 * 7 6 5 22 22 C 1.38312 * 119.97463 * 0.55613 * 21 7 6 23 23 F 1.35106 * 120.01413 * 179.74799 * 22 21 7 24 24 H 1.09000 * 109.46965 * 60.00014 * 1 2 3 25 25 H 1.08996 * 109.47445 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46813 * 300.00406 * 1 2 3 27 27 H 1.09000 * 109.47029 * 239.99213 * 2 1 3 28 28 H 1.09000 * 109.46965 * 119.99985 * 2 1 3 29 29 H 1.08000 * 119.98956 * 0.02562 * 5 4 3 30 30 H 1.07991 * 119.98115 * 180.02562 * 6 5 4 31 31 H 0.97000 * 120.00009 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.47595 * 185.00074 * 19 9 8 33 33 H 1.08999 * 109.47271 * 305.00258 * 19 9 8 34 34 H 1.08004 * 120.00890 * 180.29474 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3551 1.5254 -0.0005 5 6 4.1996 0.4261 -0.0016 6 6 5.5695 0.6067 -0.0027 7 6 6.1009 1.8879 -0.0022 8 8 7.4491 2.0645 -0.0038 9 6 8.2576 0.8886 0.0718 10 1 7.7114 0.0445 -0.3492 11 6 9.5297 1.1027 -0.7072 12 1 9.7036 2.0429 -1.2095 13 6 10.4716 0.0983 -0.7788 14 7 10.2596 -1.0467 -0.1677 15 14 12.0488 0.3640 -1.7439 16 1 12.0450 1.7272 -2.3328 17 1 13.2149 0.2208 -0.8357 18 1 12.1403 -0.6447 -2.8299 19 6 8.5983 0.5970 1.5346 20 17 7.0884 0.1965 2.4351 21 6 5.2574 2.9887 -0.0069 22 6 3.8861 2.8086 -0.0005 23 9 3.0637 3.8805 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7867 -0.5719 -0.0024 30 1 6.2268 -0.2502 -0.0039 31 1 10.9220 -1.7535 -0.2183 32 1 9.2867 -0.2465 1.5862 33 1 9.0654 1.4749 1.9808 34 1 5.6713 3.9863 -0.0113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228358101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:28 Heat of formation + Delta-G solvation = -124.699960 kcal Electronic energy + Delta-G solvation = -20619.393146 eV Core-core repulsion = 17071.840929 eV Total energy + Delta-G solvation = -3547.552216 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.87034 -41.31222 -40.04564 -37.56999 -36.52585 -35.29561 -32.67819 -32.09646 -31.11046 -29.38566 -27.26811 -25.23415 -24.38780 -22.75702 -22.20326 -19.77474 -18.87568 -18.70166 -17.78134 -17.33863 -17.09649 -16.74014 -16.36367 -15.95169 -15.73737 -15.46906 -14.94533 -14.82993 -14.19975 -14.02297 -13.83413 -13.70116 -13.40824 -13.20043 -13.09035 -12.89622 -12.75246 -12.55881 -12.30099 -12.14991 -11.91115 -11.64269 -11.36129 -11.14959 -10.73585 -10.55011 -9.94057 -8.63808 -8.36895 -6.52049 0.06938 0.35902 1.39919 1.45675 1.57272 1.60915 2.12179 2.26521 2.53966 2.61133 2.97770 3.30710 3.72839 3.96572 4.07530 4.10879 4.19656 4.31852 4.35624 4.41129 4.43411 4.49471 4.85586 4.87524 4.91709 4.95863 5.11687 5.22125 5.26269 5.36859 5.51908 5.59239 5.84540 6.31590 6.47639 6.78803 7.20396 8.69673 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023164 B = 0.004397 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.481793 B = 6366.094672 C = 6611.422650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.327 6.327 4 C 0.051 3.949 5 C -0.134 4.134 6 C -0.165 4.165 7 C 0.127 3.873 8 O -0.323 6.323 9 C 0.210 3.790 10 H 0.039 0.961 11 C -0.548 4.548 12 H 0.066 0.934 13 C 0.030 3.970 14 N -0.907 5.907 15 Si 0.975 3.025 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.028 4.028 20 Cl -0.222 7.222 21 C -0.167 4.167 22 C 0.089 3.911 23 F -0.137 7.137 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.136 0.864 31 H 0.276 0.724 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -0.631 0.822 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.242 6.242 4 C 0.005 3.995 5 C -0.153 4.153 6 C -0.184 4.184 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.155 3.845 10 H 0.056 0.944 11 C -0.585 4.585 12 H 0.084 0.916 13 C -0.172 4.172 14 N -0.544 5.544 15 Si 0.799 3.201 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.091 4.091 20 Cl -0.196 7.196 21 C -0.186 4.186 22 C 0.069 3.931 23 F -0.115 7.115 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.180 0.820 30 H 0.153 0.847 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.094 0.906 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.328 -0.493 0.921 12.373 hybrid contribution 0.886 -0.165 -0.215 0.926 sum -11.443 -0.658 0.706 11.484 Atomic orbital electron populations 1.21792 0.91063 1.04276 1.03193 1.23136 0.97194 0.80601 1.02409 1.86086 1.17123 1.31528 1.89504 1.18722 0.84000 0.92359 1.04380 1.21047 0.92205 0.98652 1.03374 1.21376 0.96051 0.96905 1.04060 1.18813 0.84168 0.93181 0.95832 1.86101 1.13305 1.37090 1.87190 1.20354 0.89596 0.82997 0.91539 0.94372 1.21266 1.02519 1.02008 1.32752 0.91555 1.25662 1.01496 0.94040 0.95986 1.69870 1.36927 1.04978 1.42658 0.85223 0.78035 0.78500 0.78299 1.19381 1.19770 1.20009 1.25449 0.86297 1.04033 0.93277 1.98637 1.45427 1.95622 1.79879 1.20115 0.89752 0.99773 1.08989 1.16516 0.86876 0.81235 1.08423 1.91450 1.71672 1.53999 1.94399 0.91782 0.87874 0.91909 0.90929 0.91202 0.82043 0.84665 0.91431 0.86271 0.90591 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.04 0.81 5.46 71.98 0.39 1.20 16 3 O -0.33 -9.43 10.00 -93.97 -0.94 -10.37 16 4 C 0.05 1.64 6.69 22.52 0.15 1.79 16 5 C -0.13 -4.15 9.03 22.35 0.20 -3.94 16 6 C -0.17 -6.08 7.04 22.37 0.16 -5.93 16 7 C 0.13 5.06 5.96 22.49 0.13 5.19 16 8 O -0.32 -14.72 9.73 -93.29 -0.91 -15.62 16 9 C 0.21 10.00 2.19 29.85 0.07 10.06 16 10 H 0.04 1.91 5.39 -2.39 -0.01 1.90 16 11 C -0.55 -28.10 8.89 25.60 0.23 -27.88 16 12 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 13 C 0.03 1.46 5.29 84.66 0.45 1.91 16 14 N -0.91 -45.66 11.30 21.45 0.24 -45.41 16 15 Si 0.98 39.48 29.54 68.60 2.03 41.50 16 16 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 19 C -0.03 -1.23 6.17 71.98 0.44 -0.78 16 20 Cl -0.22 -8.72 25.60 -2.72 -0.07 -8.79 16 21 C -0.17 -6.03 9.96 22.39 0.22 -5.80 16 22 C 0.09 3.09 7.31 22.44 0.16 3.25 16 23 F -0.14 -4.66 17.11 44.97 0.77 -3.89 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 28 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 29 H 0.16 3.92 6.29 -2.91 -0.02 3.90 16 30 H 0.14 5.32 5.10 -2.92 -0.01 5.30 16 31 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 32 H 0.12 5.68 5.96 -2.39 -0.01 5.66 16 33 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.15 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -54.64 303.68 5.60 -49.04 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.13 Total: 15.87 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 3.35 Total: -22.32 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.24 Total: -45.41 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -1.85 Total: -26.00 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.77 Total: -3.89 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 17 Polarization: -8.72 SS G_CDS: -0.07 Total: -8.79 kcal Total: -54.64 5.60 -49.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228358101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.661 kcal (2) G-P(sol) polarization free energy of solvation -54.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds