Wall clock time and date at job start Tue Mar 31 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86801 * 119.99972 * 2 1 4 4 H 1.48507 * 109.47261 * 269.99894 * 3 2 1 5 5 H 1.48507 * 109.47153 * 29.99698 * 3 2 1 6 6 H 1.48495 * 109.47519 * 149.99939 * 3 2 1 7 7 C 1.37879 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99933 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47405 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.47119 * 59.99905 * 9 7 2 12 12 C 1.35445 * 116.99879 * 90.00138 * 11 9 7 13 13 N 1.32292 * 119.13382 * 359.73153 * 12 11 9 14 14 C 1.32925 * 120.80629 * 180.28557 * 13 12 11 15 15 O 1.35523 * 120.44258 * 180.02562 * 14 13 12 16 16 C 1.39028 * 119.11853 * 359.97438 * 14 13 12 17 17 C 1.39023 * 118.41537 * 0.02562 * 16 14 13 18 18 O 1.35535 * 120.43359 * 180.02562 * 17 16 14 19 19 N 1.32284 * 119.13780 * 180.02562 * 12 11 9 20 20 C 1.50705 * 109.46909 * 300.00050 * 9 7 2 21 21 C 1.38238 * 119.99854 * 84.72859 * 20 9 7 22 22 C 1.38235 * 119.99645 * 179.78556 * 21 20 9 23 23 C 1.38233 * 120.00154 * 0.44017 * 22 21 20 24 24 C 1.38231 * 119.99973 * 359.81569 * 23 22 21 25 25 C 1.38234 * 120.00027 * 264.99658 * 20 9 7 26 26 H 0.97005 * 120.00251 * 359.97438 * 1 2 3 27 27 H 0.96698 * 114.00210 * 269.97496 * 15 14 13 28 28 H 1.07995 * 120.79067 * 179.97438 * 16 14 13 29 29 H 0.96706 * 114.00069 * 269.97612 * 18 17 16 30 30 H 1.07997 * 120.00113 * 359.97438 * 21 20 9 31 31 H 1.08006 * 119.99356 * 180.27143 * 22 21 20 32 32 H 1.08000 * 119.99786 * 179.82836 * 23 22 21 33 33 H 1.07999 * 119.99876 * 180.02562 * 24 23 22 34 34 H 1.07993 * 120.00041 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 0.9802 -3.1295 -2.2728 13 7 2.2297 -3.5612 -2.2223 14 6 2.8054 -4.1061 -3.2893 15 8 4.0857 -4.5463 -3.2292 16 6 2.0763 -4.2192 -4.4677 17 6 0.7662 -3.7544 -4.4822 18 8 0.0181 -3.8449 -5.6088 19 7 0.2570 -3.2202 -3.3767 20 6 0.3851 -2.5792 1.2303 21 6 -0.8704 -2.0007 1.2309 22 6 -1.6664 -2.0780 2.3584 23 6 -1.2034 -2.7259 3.4883 24 6 0.0542 -3.2999 3.4894 25 6 0.8485 -3.2264 2.3605 26 1 -0.4851 0.8401 0.0004 27 1 4.7431 -3.8775 -3.4647 28 1 2.5174 -4.6571 -5.3508 29 1 0.0862 -3.0743 -6.1891 30 1 -1.2305 -1.4910 0.3495 31 1 -2.6491 -1.6298 2.3574 32 1 -1.8242 -2.7839 4.3701 33 1 0.4157 -3.8064 4.3721 34 1 1.8309 -3.6750 2.3613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228387472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:41 Heat of formation + Delta-G solvation = -18.622775 kcal Electronic energy + Delta-G solvation = -22489.899333 eV Core-core repulsion = 18969.299779 eV Total energy + Delta-G solvation = -3520.599553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81205 -38.60711 -37.93781 -37.51302 -35.95762 -33.14341 -32.17849 -30.77647 -29.97525 -29.63725 -27.05449 -24.01945 -23.53434 -22.71853 -21.45582 -20.34435 -19.45719 -18.24113 -17.32683 -17.12514 -16.11696 -15.88650 -15.73926 -15.16949 -14.85047 -14.52677 -14.13653 -14.06930 -13.59614 -13.05690 -12.65945 -12.38908 -12.33028 -11.80876 -11.60563 -11.46729 -11.32817 -11.07225 -10.65705 -10.52015 -10.28564 -10.14979 -10.02102 -9.55597 -9.41246 -8.91764 -8.73752 -8.22820 -7.83894 -7.57373 -6.14476 -4.48710 1.27624 1.39216 2.37245 2.55001 3.04761 3.16916 3.22524 3.25458 3.74171 4.07776 4.19289 4.27089 4.89817 4.99493 5.18171 5.28312 5.41713 5.71709 5.77258 5.89862 5.96703 6.17256 6.33987 6.58354 6.65236 6.81162 7.00243 7.15431 7.28673 7.42071 7.43612 7.51923 7.59245 7.71101 7.84419 7.93982 8.15675 8.19778 8.57338 8.83848 9.26725 10.69084 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.006185 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.551685 B = 4526.188555 C = 5210.875380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.078 3.922 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.071 0.929 9 C 0.242 3.758 10 H 0.059 0.941 11 O -0.260 6.260 12 C 0.572 3.428 13 N -0.580 5.580 14 C 0.406 3.594 15 O -0.478 6.478 16 C -0.326 4.326 17 C 0.404 3.596 18 O -0.476 6.476 19 N -0.562 5.562 20 C -0.049 4.049 21 C -0.048 4.048 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.121 4.121 26 H 0.267 0.733 27 H 0.406 0.594 28 H 0.148 0.852 29 H 0.406 0.594 30 H 0.164 0.836 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -4.093 -5.571 7.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.189 3.811 10 H 0.077 0.923 11 O -0.157 6.157 12 C 0.272 3.728 13 N -0.323 5.323 14 C 0.217 3.783 15 O -0.286 6.286 16 C -0.352 4.352 17 C 0.216 3.784 18 O -0.283 6.283 19 N -0.302 5.302 20 C -0.050 4.050 21 C -0.067 4.067 22 C -0.169 4.169 23 C -0.160 4.160 24 C -0.166 4.166 25 C -0.140 4.140 26 H 0.078 0.922 27 H 0.265 0.735 28 H 0.166 0.834 29 H 0.265 0.735 30 H 0.181 0.819 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.630 -4.494 -4.259 6.402 hybrid contribution 1.382 1.511 -0.876 2.227 sum 3.012 -2.983 -5.135 6.659 Atomic orbital electron populations 1.69807 1.05932 1.26772 1.45301 1.25141 0.94934 0.99757 0.93080 0.86468 0.80057 0.82544 0.78285 1.20454 1.20736 1.19523 1.21343 0.93398 0.89584 1.52092 0.91090 1.19160 0.87096 0.97707 0.77166 0.92319 1.86471 1.42778 1.69158 1.17311 1.20242 0.82006 0.83431 0.87076 1.67777 1.13862 1.18677 1.32001 1.18877 0.86122 0.86635 0.86633 1.84672 1.12758 1.39651 1.91479 1.22449 0.96289 1.15387 1.01100 1.18762 0.85292 0.88639 0.85703 1.84700 1.69152 1.44894 1.29559 1.67082 1.39403 1.24175 0.99563 1.19801 0.94499 0.95663 0.95039 1.21906 0.92753 0.92411 0.99592 1.21147 0.99689 1.01508 0.94568 1.20863 0.96354 1.00888 0.97869 1.20714 0.95280 1.02941 0.97693 1.20752 0.99140 1.00554 0.93505 0.92192 0.73469 0.83375 0.73521 0.81863 0.87772 0.88040 0.87705 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.06 8.50 55.43 0.47 -21.59 16 2 C 0.08 2.02 5.24 -17.82 -0.09 1.92 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -13.77 8.89 -34.44 -0.31 -14.08 16 8 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.24 6.02 2.34 -29.03 -0.07 5.95 16 10 H 0.06 1.44 6.87 -51.93 -0.36 1.08 16 11 O -0.26 -6.61 8.39 -18.03 -0.15 -6.76 16 12 C 0.57 13.15 8.45 -91.30 -0.77 12.38 16 13 N -0.58 -12.22 8.68 -14.86 -0.13 -12.35 16 14 C 0.41 6.87 7.82 -16.79 -0.13 6.74 16 15 O -0.48 -6.53 13.57 -18.26 -0.25 -6.78 16 16 C -0.33 -4.86 10.07 -39.00 -0.39 -5.25 16 17 C 0.40 6.81 7.82 -16.79 -0.13 6.67 16 18 O -0.48 -6.34 13.57 -18.30 -0.25 -6.59 16 19 N -0.56 -11.94 10.48 -14.86 -0.16 -12.09 16 20 C -0.05 -1.18 4.80 -104.62 -0.50 -1.68 16 21 C -0.05 -1.13 7.46 -39.58 -0.30 -1.43 16 22 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 23 C -0.14 -2.70 10.05 -39.59 -0.40 -3.09 16 24 C -0.15 -2.84 10.05 -39.59 -0.40 -3.24 16 25 C -0.12 -2.59 9.68 -39.58 -0.38 -2.98 16 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.41 3.37 9.06 45.56 0.41 3.78 16 28 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.41 3.12 9.06 45.56 0.41 3.54 16 30 H 0.16 4.20 5.50 -52.49 -0.29 3.92 16 31 H 0.10 1.93 8.06 -52.48 -0.42 1.50 16 32 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -31.68 303.67 -6.65 -38.33 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -1.48 Total: 9.65 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -4.27 Total: -1.61 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.19 Total: -46.03 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.65 Total: -20.13 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.68 -6.65 -38.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228387472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.711 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds