Wall clock time and date at job start Tue Mar 31 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86801 * 119.99972 * 2 1 4 4 H 1.48507 * 109.47261 * 269.99894 * 3 2 1 5 5 H 1.48507 * 109.47153 * 29.99698 * 3 2 1 6 6 H 1.48495 * 109.47519 * 149.99939 * 3 2 1 7 7 C 1.37879 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99933 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47405 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.47119 * 59.99905 * 9 7 2 12 12 C 1.35445 * 116.99879 * 90.00138 * 11 9 7 13 13 N 1.32292 * 119.13382 * 359.73153 * 12 11 9 14 14 C 1.32925 * 120.80629 * 180.28557 * 13 12 11 15 15 O 1.35523 * 120.44258 * 180.02562 * 14 13 12 16 16 C 1.39028 * 119.11853 * 359.97438 * 14 13 12 17 17 C 1.39023 * 118.41537 * 0.02562 * 16 14 13 18 18 O 1.35535 * 120.43359 * 180.02562 * 17 16 14 19 19 N 1.32284 * 119.13780 * 180.02562 * 12 11 9 20 20 C 1.50705 * 109.46909 * 300.00050 * 9 7 2 21 21 C 1.38238 * 119.99854 * 84.72859 * 20 9 7 22 22 C 1.38235 * 119.99645 * 179.78556 * 21 20 9 23 23 C 1.38233 * 120.00154 * 0.44017 * 22 21 20 24 24 C 1.38231 * 119.99973 * 359.81569 * 23 22 21 25 25 C 1.38234 * 120.00027 * 264.99658 * 20 9 7 26 26 H 0.97005 * 120.00251 * 359.97438 * 1 2 3 27 27 H 0.96698 * 114.00210 * 269.97496 * 15 14 13 28 28 H 1.07995 * 120.79067 * 179.97438 * 16 14 13 29 29 H 0.96706 * 114.00069 * 269.97612 * 18 17 16 30 30 H 1.07997 * 120.00113 * 359.97438 * 21 20 9 31 31 H 1.08006 * 119.99356 * 180.27143 * 22 21 20 32 32 H 1.08000 * 119.99786 * 179.82836 * 23 22 21 33 33 H 1.07999 * 119.99876 * 180.02562 * 24 23 22 34 34 H 1.07993 * 120.00041 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 0.9802 -3.1295 -2.2728 13 7 2.2297 -3.5612 -2.2223 14 6 2.8054 -4.1061 -3.2893 15 8 4.0857 -4.5463 -3.2292 16 6 2.0763 -4.2192 -4.4677 17 6 0.7662 -3.7544 -4.4822 18 8 0.0181 -3.8449 -5.6088 19 7 0.2570 -3.2202 -3.3767 20 6 0.3851 -2.5792 1.2303 21 6 -0.8704 -2.0007 1.2309 22 6 -1.6664 -2.0780 2.3584 23 6 -1.2034 -2.7259 3.4883 24 6 0.0542 -3.2999 3.4894 25 6 0.8485 -3.2264 2.3605 26 1 -0.4851 0.8401 0.0004 27 1 4.7431 -3.8775 -3.4647 28 1 2.5174 -4.6571 -5.3508 29 1 0.0862 -3.0743 -6.1891 30 1 -1.2305 -1.4910 0.3495 31 1 -2.6491 -1.6298 2.3574 32 1 -1.8242 -2.7839 4.3701 33 1 0.4157 -3.8064 4.3721 34 1 1.8309 -3.6750 2.3613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228387472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:40 Heat of formation + Delta-G solvation = -47.937891 kcal Electronic energy + Delta-G solvation = -22491.170531 eV Core-core repulsion = 18969.299779 eV Total energy + Delta-G solvation = -3521.870752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.24168 -40.23975 -39.11924 -39.00922 -37.36114 -34.98127 -33.62994 -32.44844 -31.46232 -31.17719 -28.86753 -25.67841 -24.90275 -24.33581 -23.06579 -21.98849 -20.77533 -19.71298 -18.96631 -18.32567 -17.78319 -17.38342 -17.32270 -16.70193 -16.41323 -15.87698 -15.69046 -15.55736 -15.23916 -14.74938 -14.27560 -13.95454 -13.61616 -13.46512 -13.29487 -13.10878 -12.86080 -12.60561 -12.36926 -12.21278 -11.83174 -11.62292 -11.49942 -11.29078 -11.07110 -10.82046 -10.24094 -9.75763 -9.47082 -9.26750 -8.02429 -6.45955 -0.05528 0.00540 0.73938 0.92896 1.35105 1.37741 1.47386 1.66846 2.33043 2.40962 2.70432 2.85860 3.10749 3.27108 3.69536 4.07331 4.20422 4.28959 4.33790 4.39178 4.54990 4.62337 4.81891 4.96297 5.08308 5.15528 5.38549 5.55651 5.60548 5.81128 5.84223 5.93137 6.04748 6.26944 6.42065 6.48674 6.51490 6.59924 6.76049 7.21227 7.34556 8.77434 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.006185 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.551685 B = 4526.188555 C = 5210.875380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.038 3.962 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.250 3.750 10 H 0.046 0.954 11 O -0.288 6.288 12 C 0.548 3.452 13 N -0.609 5.609 14 C 0.401 3.599 15 O -0.474 6.474 16 C -0.296 4.296 17 C 0.403 3.597 18 O -0.471 6.471 19 N -0.596 5.596 20 C -0.079 4.079 21 C -0.070 4.070 22 C -0.158 4.158 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.135 4.135 26 H 0.265 0.735 27 H 0.430 0.570 28 H 0.193 0.807 29 H 0.431 0.569 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -4.733 -5.629 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.167 4.167 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.196 3.804 10 H 0.064 0.936 11 O -0.187 6.187 12 C 0.247 3.753 13 N -0.353 5.353 14 C 0.214 3.786 15 O -0.285 6.285 16 C -0.321 4.321 17 C 0.216 3.784 18 O -0.282 6.282 19 N -0.338 5.338 20 C -0.080 4.080 21 C -0.089 4.089 22 C -0.176 4.176 23 C -0.152 4.152 24 C -0.159 4.159 25 C -0.153 4.153 26 H 0.075 0.925 27 H 0.293 0.707 28 H 0.211 0.789 29 H 0.294 0.706 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.275 -5.139 -4.388 7.130 hybrid contribution 1.219 1.568 -1.006 2.227 sum 3.494 -3.570 -5.394 7.352 Atomic orbital electron populations 1.70016 1.06707 1.26938 1.45698 1.25773 0.95717 1.02240 0.92945 0.85617 0.78997 0.79237 0.78159 1.20304 1.20372 1.19223 1.21438 0.92983 0.90852 1.53131 0.92192 1.18980 0.87112 0.96562 0.77699 0.93574 1.86357 1.43384 1.70678 1.18272 1.20259 0.83000 0.85022 0.87053 1.67703 1.13412 1.19935 1.34242 1.19172 0.87294 0.85816 0.86315 1.84646 1.11948 1.40402 1.91538 1.22765 0.94962 1.12852 1.01560 1.19035 0.86110 0.87743 0.85483 1.84674 1.68664 1.46376 1.28488 1.67012 1.40594 1.25809 1.00386 1.19966 0.94992 0.97370 0.95635 1.21700 0.93541 0.93731 0.99961 1.21396 1.00211 1.01663 0.94311 1.21300 0.96608 0.98995 0.98318 1.21161 0.94890 1.01895 0.97941 1.21000 1.00073 1.00599 0.93655 0.92486 0.70697 0.78947 0.70572 0.84697 0.85909 0.83991 0.83840 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.82 8.50 21.45 0.18 -46.64 16 2 C 0.04 2.05 5.24 84.66 0.44 2.49 16 3 Si 0.95 42.41 29.54 68.60 2.03 44.44 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -29.85 8.89 25.60 0.23 -29.62 16 8 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 9 C 0.25 13.12 2.34 29.10 0.07 13.19 16 10 H 0.05 2.42 6.87 -2.39 -0.02 2.40 16 11 O -0.29 -15.56 8.39 -87.42 -0.73 -16.29 16 12 C 0.55 26.26 8.45 180.59 1.53 27.78 16 13 N -0.61 -26.30 8.68 -426.50 -3.70 -30.01 16 14 C 0.40 13.14 7.82 84.72 0.66 13.80 16 15 O -0.47 -12.02 13.57 -88.26 -1.20 -13.21 16 16 C -0.30 -8.10 10.07 22.65 0.23 -7.87 16 17 C 0.40 13.06 7.82 84.72 0.66 13.73 16 18 O -0.47 -11.50 13.57 -88.40 -1.20 -12.70 16 19 N -0.60 -25.91 10.48 -426.50 -4.47 -30.38 16 20 C -0.08 -3.93 4.80 -19.86 -0.10 -4.02 16 21 C -0.07 -3.46 7.46 22.27 0.17 -3.29 16 22 C -0.16 -6.47 10.05 22.27 0.22 -6.25 16 23 C -0.13 -4.76 10.05 22.27 0.22 -4.54 16 24 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 25 C -0.14 -5.79 9.68 22.27 0.22 -5.57 16 26 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 27 H 0.43 6.14 9.06 -74.06 -0.67 5.47 16 28 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.43 5.51 9.06 -74.05 -0.67 4.84 16 30 H 0.14 7.39 5.50 -2.91 -0.02 7.37 16 31 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -72.34 303.67 -4.48 -76.83 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.16 Total: 22.99 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.78 Total: 4.97 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -7.99 Total: -107.02 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -3.13 Total: -42.20 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -72.34 -4.48 -76.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228387472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.890 kcal (2) G-P(sol) polarization free energy of solvation -72.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds