Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36119 * 117.00154 * 2 1 4 4 C 1.39371 * 120.88432 * 269.97784 * 3 2 1 5 5 O 1.35636 * 120.50322 * 359.97438 * 4 3 2 6 6 N 1.32900 * 118.99608 * 180.02562 * 4 3 2 7 7 C 1.31778 * 120.90355 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.01951 * 180.02562 * 7 6 4 9 9 N 1.31750 * 121.95980 * 359.71371 * 7 6 4 10 10 C 1.32920 * 120.90430 * 0.57527 * 9 7 6 11 11 O 1.35648 * 120.49741 * 179.71479 * 10 9 7 12 12 C 1.42895 * 117.00326 * 359.72373 * 11 10 9 13 13 H 1.09004 * 109.46764 * 29.99695 * 12 11 10 14 14 C 1.50699 * 109.47630 * 149.99869 * 12 11 10 15 15 H 1.07998 * 119.99750 * 95.12272 * 14 12 11 16 16 C 1.37872 * 119.99954 * 275.12889 * 14 12 11 17 17 N 1.31513 * 120.00160 * 355.67333 * 16 14 12 18 18 Si 1.86803 * 119.99853 * 175.67716 * 16 14 12 19 19 H 1.48497 * 109.47468 * 59.99574 * 18 16 14 20 20 H 1.48501 * 109.47210 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46877 * 299.99677 * 18 16 14 22 22 C 1.53004 * 109.47316 * 270.00580 * 12 11 10 23 23 Cl 1.80299 * 109.47432 * 65.70857 * 22 12 11 24 24 H 1.09006 * 109.47052 * 59.99695 * 1 2 3 25 25 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47261 * 300.00340 * 1 2 3 27 27 H 0.96700 * 114.00147 * 90.00034 * 5 4 3 28 28 H 1.09004 * 109.47446 * 89.99572 * 8 7 6 29 29 H 1.08995 * 109.47398 * 209.99633 * 8 7 6 30 30 H 1.09004 * 109.47032 * 330.00418 * 8 7 6 31 31 H 0.96997 * 120.00461 * 5.56690 * 17 16 14 32 32 H 1.08997 * 109.47081 * 185.71301 * 22 12 11 33 33 H 1.09003 * 109.46676 * 305.70965 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0469 1.2128 0.0000 4 6 2.3722 1.8500 -1.1961 5 8 2.0781 1.2708 -2.3868 6 7 2.9757 3.0333 -1.1523 7 6 3.2664 3.6025 0.0001 8 6 3.9505 4.9453 0.0002 9 7 2.9713 3.0355 1.1521 10 6 2.3726 1.8495 1.1958 11 8 2.0778 1.2706 2.3865 12 6 2.4447 1.9893 3.5659 13 1 2.4138 3.0599 3.3632 14 6 1.4796 1.6601 4.6755 15 1 1.7196 0.8841 5.3873 16 6 0.2904 2.3494 4.7820 17 7 0.0355 3.3506 3.9683 18 14 -0.9589 1.8613 6.0822 19 1 -0.3476 1.9903 7.4293 20 1 -2.1436 2.7519 5.9894 21 1 -1.3785 0.4539 5.8618 22 6 3.8607 1.5905 3.9863 23 17 5.0360 2.1357 2.7324 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.2056 1.5036 -2.7327 28 1 3.1999 5.7356 0.0007 29 1 4.5736 5.0355 0.8899 30 1 4.5729 5.0360 -0.8901 31 1 0.6461 3.5531 3.2422 32 1 4.1025 2.0603 4.9397 33 1 3.9172 0.5070 4.0906 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230022585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = -80.304560 kcal Electronic energy + Delta-G solvation = -21710.015214 eV Core-core repulsion = 18184.308089 eV Total energy + Delta-G solvation = -3525.707126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.97207 -38.27116 -37.86539 -36.86685 -35.12828 -33.59029 -32.05628 -31.52784 -29.87863 -28.15119 -26.01448 -24.93556 -23.78395 -22.22756 -21.47926 -18.70445 -18.42737 -17.47144 -17.02853 -16.78602 -15.88674 -14.95003 -14.64928 -14.31567 -14.02676 -13.91948 -13.75451 -13.53597 -13.11972 -12.46726 -12.34776 -12.31128 -12.01987 -11.76617 -11.69219 -11.36446 -11.05750 -10.62125 -10.39554 -10.35682 -10.27679 -10.06382 -9.66911 -9.30896 -9.01257 -8.75013 -8.59997 -8.08567 -6.85773 -4.69933 1.09770 1.57407 2.99759 3.18525 3.25796 3.38623 3.43526 3.79305 3.90368 4.14599 4.23142 4.40145 4.87396 5.22175 5.33539 5.43110 5.55149 5.68844 5.75260 5.76672 5.80443 5.88331 5.88955 6.01175 6.17396 6.47808 6.74898 7.10517 7.37389 7.54872 7.70852 7.93512 8.20265 8.33805 8.52389 9.10377 10.50927 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.007381 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.739410 B = 3792.660126 C = 4625.781551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C -0.070 4.070 4 C 0.359 3.641 5 O -0.468 6.468 6 N -0.565 5.565 7 C 0.366 3.634 8 C -0.081 4.081 9 N -0.541 5.541 10 C 0.383 3.617 11 O -0.286 6.286 12 C 0.176 3.824 13 H 0.075 0.925 14 C -0.595 4.595 15 H 0.066 0.934 16 C 0.037 3.963 17 N -0.872 5.872 18 Si 1.075 2.925 19 H -0.281 1.281 20 H -0.278 1.278 21 H -0.281 1.281 22 C -0.027 4.027 23 Cl -0.210 7.210 24 H 0.035 0.965 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.398 0.602 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.277 0.723 32 H 0.098 0.902 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 -0.415 -6.143 6.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.121 4.121 4 C 0.174 3.826 5 O -0.274 6.274 6 N -0.298 5.298 7 C 0.098 3.902 8 C -0.139 4.139 9 N -0.275 5.275 10 C 0.196 3.804 11 O -0.188 6.188 12 C 0.123 3.877 13 H 0.093 0.907 14 C -0.631 4.631 15 H 0.084 0.916 16 C -0.174 4.174 17 N -0.505 5.505 18 Si 0.900 3.100 19 H -0.207 1.207 20 H -0.203 1.203 21 H -0.207 1.207 22 C -0.090 4.090 23 Cl -0.183 7.183 24 H 0.053 0.947 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.256 0.744 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.420 0.075 -5.395 5.579 hybrid contribution 0.585 -0.946 -0.857 1.405 sum 2.005 -0.871 -6.252 6.623 Atomic orbital electron populations 1.23000 0.79856 1.03021 1.00385 1.86184 1.19375 1.22568 1.93787 1.19555 1.09178 0.92682 0.90732 1.19440 0.91698 0.86903 0.84548 1.84763 1.40250 1.68539 1.33857 1.67743 1.19611 1.10880 1.31585 1.22643 0.90497 0.95437 0.81588 1.20532 1.00109 0.89318 1.03935 1.68231 1.17840 1.10913 1.30471 1.20927 0.84705 0.86394 0.88379 1.86982 1.72996 1.47578 1.11286 1.20854 0.89994 0.95686 0.81183 0.90742 1.21916 1.06114 1.25081 1.10004 0.91587 1.26212 0.98001 0.92267 1.00878 1.70783 1.39793 1.24265 1.15706 0.83465 0.75646 0.76321 0.74552 1.20690 1.20262 1.20739 1.25096 0.90325 1.01641 0.91894 1.98671 1.65617 1.92232 1.61824 0.94656 0.88846 0.92814 0.74403 0.89612 0.89417 0.89920 0.91171 0.88331 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.13 101.05 1.13 1.63 16 2 O -0.31 -6.05 10.13 -43.90 -0.44 -6.50 16 3 C -0.07 -1.44 5.82 -38.75 -0.23 -1.66 16 4 C 0.36 6.67 7.84 -16.67 -0.13 6.54 16 5 O -0.47 -7.20 13.41 -31.53 -0.42 -7.62 16 6 N -0.56 -10.48 10.35 -10.75 -0.11 -10.59 16 7 C 0.37 6.78 7.64 -157.25 -1.20 5.58 16 8 C -0.08 -1.13 10.31 36.01 0.37 -0.76 16 9 N -0.54 -11.36 6.46 -10.75 -0.07 -11.43 16 10 C 0.38 8.60 6.69 -16.67 -0.11 8.49 16 11 O -0.29 -7.02 9.59 -31.59 -0.30 -7.33 16 12 C 0.18 4.23 1.96 -27.88 -0.05 4.17 16 13 H 0.07 1.92 5.57 -51.93 -0.29 1.63 16 14 C -0.60 -15.32 8.69 -34.44 -0.30 -15.62 16 15 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.04 0.95 5.46 -17.82 -0.10 0.86 16 17 N -0.87 -24.24 13.62 55.43 0.75 -23.48 16 18 Si 1.07 22.74 29.91 -169.99 -5.08 17.66 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.03 -0.55 6.31 37.16 0.23 -0.32 16 23 Cl -0.21 -4.14 25.97 -51.86 -1.35 -5.49 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.40 3.95 9.06 45.56 0.41 4.36 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.28 7.83 6.67 -40.82 -0.27 7.55 16 32 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -30.88 306.85 -5.53 -36.40 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.74 Total: 4.83 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.39 Total: 8.92 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.57 Total: -45.51 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.17 Total: -21.45 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.08 Total: 17.66 kcal Atomic # 17 Polarization: -4.14 SS G_CDS: -1.35 Total: -5.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.88 -5.53 -36.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230022585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.901 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds