Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36119 * 117.00154 * 2 1 4 4 C 1.39371 * 120.88432 * 269.97784 * 3 2 1 5 5 O 1.35636 * 120.50322 * 359.97438 * 4 3 2 6 6 N 1.32900 * 118.99608 * 180.02562 * 4 3 2 7 7 C 1.31778 * 120.90355 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.01951 * 180.02562 * 7 6 4 9 9 N 1.31750 * 121.95980 * 359.71371 * 7 6 4 10 10 C 1.32920 * 120.90430 * 0.57527 * 9 7 6 11 11 O 1.35648 * 120.49741 * 179.71479 * 10 9 7 12 12 C 1.42895 * 117.00326 * 359.72373 * 11 10 9 13 13 H 1.09004 * 109.46764 * 29.99695 * 12 11 10 14 14 C 1.50699 * 109.47630 * 149.99869 * 12 11 10 15 15 H 1.07998 * 119.99750 * 95.12272 * 14 12 11 16 16 C 1.37872 * 119.99954 * 275.12889 * 14 12 11 17 17 N 1.31513 * 120.00160 * 355.67333 * 16 14 12 18 18 Si 1.86803 * 119.99853 * 175.67716 * 16 14 12 19 19 H 1.48497 * 109.47468 * 59.99574 * 18 16 14 20 20 H 1.48501 * 109.47210 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46877 * 299.99677 * 18 16 14 22 22 C 1.53004 * 109.47316 * 270.00580 * 12 11 10 23 23 Cl 1.80299 * 109.47432 * 65.70857 * 22 12 11 24 24 H 1.09006 * 109.47052 * 59.99695 * 1 2 3 25 25 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47261 * 300.00340 * 1 2 3 27 27 H 0.96700 * 114.00147 * 90.00034 * 5 4 3 28 28 H 1.09004 * 109.47446 * 89.99572 * 8 7 6 29 29 H 1.08995 * 109.47398 * 209.99633 * 8 7 6 30 30 H 1.09004 * 109.47032 * 330.00418 * 8 7 6 31 31 H 0.96997 * 120.00461 * 5.56690 * 17 16 14 32 32 H 1.08997 * 109.47081 * 185.71301 * 22 12 11 33 33 H 1.09003 * 109.46676 * 305.70965 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0469 1.2128 0.0000 4 6 2.3722 1.8500 -1.1961 5 8 2.0781 1.2708 -2.3868 6 7 2.9757 3.0333 -1.1523 7 6 3.2664 3.6025 0.0001 8 6 3.9505 4.9453 0.0002 9 7 2.9713 3.0355 1.1521 10 6 2.3726 1.8495 1.1958 11 8 2.0778 1.2706 2.3865 12 6 2.4447 1.9893 3.5659 13 1 2.4138 3.0599 3.3632 14 6 1.4796 1.6601 4.6755 15 1 1.7196 0.8841 5.3873 16 6 0.2904 2.3494 4.7820 17 7 0.0355 3.3506 3.9683 18 14 -0.9589 1.8613 6.0822 19 1 -0.3476 1.9903 7.4293 20 1 -2.1436 2.7519 5.9894 21 1 -1.3785 0.4539 5.8618 22 6 3.8607 1.5905 3.9863 23 17 5.0360 2.1357 2.7324 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.2056 1.5036 -2.7327 28 1 3.1999 5.7356 0.0007 29 1 4.5736 5.0355 0.8899 30 1 4.5729 5.0360 -0.8901 31 1 0.6461 3.5531 3.2422 32 1 4.1025 2.0603 4.9397 33 1 3.9172 0.5070 4.0906 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230022585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = -103.921163 kcal Electronic energy + Delta-G solvation = -21711.039307 eV Core-core repulsion = 18184.308089 eV Total energy + Delta-G solvation = -3526.731218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.48209 -39.91201 -39.33264 -38.27832 -36.75679 -35.46949 -33.60926 -32.95258 -31.61793 -29.48344 -27.35614 -26.83099 -25.37088 -23.68718 -23.22980 -20.15421 -20.06348 -19.03350 -18.62890 -18.45075 -17.41018 -16.52774 -16.08564 -16.03969 -15.68289 -15.34174 -15.17974 -15.08418 -14.60693 -14.11363 -13.97731 -13.62735 -13.47076 -13.14736 -12.99968 -12.85772 -12.73645 -12.27458 -11.96393 -11.93728 -11.81757 -11.59121 -11.28930 -11.15289 -10.73039 -10.50906 -10.15319 -9.68974 -8.89583 -6.74394 -0.35478 0.01426 1.34759 1.51312 1.57078 1.79220 1.88644 2.29583 2.43313 2.49866 2.66611 2.95373 3.11008 3.60465 3.95021 4.01304 4.07671 4.14917 4.29254 4.40095 4.42583 4.63241 4.70585 4.72058 4.81446 4.89302 5.26305 5.49872 5.73606 5.90800 6.05649 6.26023 6.41184 6.54521 7.01046 7.14432 8.46558 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.007381 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.739410 B = 3792.660126 C = 4625.781551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C -0.085 4.085 4 C 0.371 3.629 5 O -0.464 6.464 6 N -0.561 5.561 7 C 0.357 3.643 8 C -0.077 4.077 9 N -0.556 5.556 10 C 0.359 3.641 11 O -0.308 6.308 12 C 0.179 3.821 13 H 0.052 0.948 14 C -0.612 4.612 15 H 0.069 0.931 16 C -0.007 4.007 17 N -0.901 5.901 18 Si 1.119 2.881 19 H -0.259 1.259 20 H -0.282 1.282 21 H -0.270 1.270 22 C -0.022 4.022 23 Cl -0.199 7.199 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.022 0.978 27 H 0.424 0.576 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.261 0.739 32 H 0.112 0.888 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 -0.646 -6.901 7.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C -0.136 4.136 4 C 0.185 3.815 5 O -0.274 6.274 6 N -0.294 5.294 7 C 0.090 3.910 8 C -0.135 4.135 9 N -0.290 5.290 10 C 0.172 3.828 11 O -0.211 6.211 12 C 0.126 3.874 13 H 0.070 0.930 14 C -0.648 4.648 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.535 5.535 18 Si 0.938 3.062 19 H -0.184 1.184 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.085 4.085 23 Cl -0.173 7.173 24 H 0.083 0.917 25 H 0.140 0.860 26 H 0.041 0.959 27 H 0.286 0.714 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.496 -0.148 -6.185 6.365 hybrid contribution 0.610 -0.891 -0.808 1.349 sum 2.106 -1.039 -6.993 7.377 Atomic orbital electron populations 1.23191 0.78013 1.04902 1.00285 1.86137 1.21230 1.22445 1.93826 1.19710 1.09949 0.93142 0.90829 1.19462 0.90632 0.86469 0.84939 1.84712 1.42225 1.68308 1.32152 1.67910 1.19448 1.10745 1.31331 1.23514 0.89856 0.96623 0.80973 1.20697 1.00515 0.87262 1.05055 1.68247 1.18332 1.10620 1.31803 1.21138 0.86167 0.87418 0.88061 1.86828 1.74180 1.47953 1.12189 1.20666 0.91433 0.94393 0.80928 0.93035 1.22237 1.06619 1.25012 1.10924 0.91249 1.27585 0.99844 0.91599 1.02036 1.70901 1.39956 1.26110 1.16530 0.82932 0.73522 0.76398 0.73353 1.18395 1.20686 1.19472 1.24940 0.88980 1.02055 0.92477 1.98666 1.64863 1.92185 1.61577 0.91664 0.86018 0.95939 0.71366 0.87879 0.89369 0.87631 0.92807 0.87000 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.13 113.37 1.26 2.19 16 2 O -0.32 -12.61 10.13 -72.16 -0.73 -13.34 16 3 C -0.08 -3.47 5.82 22.81 0.13 -3.34 16 4 C 0.37 13.25 7.84 84.80 0.67 13.91 16 5 O -0.46 -13.09 13.41 -77.14 -1.03 -14.12 16 6 N -0.56 -19.92 10.35 -300.47 -3.11 -23.03 16 7 C 0.36 12.89 7.64 138.77 1.06 13.95 16 8 C -0.08 -2.02 10.31 71.24 0.73 -1.29 16 9 N -0.56 -23.49 6.46 -300.46 -1.94 -25.43 16 10 C 0.36 16.33 6.69 84.79 0.57 16.89 16 11 O -0.31 -15.51 9.59 -77.25 -0.74 -16.25 16 12 C 0.18 8.81 1.96 29.85 0.06 8.87 16 13 H 0.05 2.76 5.57 -2.39 -0.01 2.75 16 14 C -0.61 -31.94 8.69 25.60 0.22 -31.72 16 15 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 16 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 17 N -0.90 -51.37 13.62 21.45 0.29 -51.08 16 18 Si 1.12 45.61 29.91 68.60 2.05 47.66 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 22 C -0.02 -0.89 6.31 71.98 0.45 -0.44 16 23 Cl -0.20 -7.79 25.97 -2.72 -0.07 -7.86 16 24 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.42 7.06 9.06 -74.06 -0.67 6.39 16 28 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.26 15.40 6.67 -92.71 -0.62 14.78 16 32 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 33 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -67.40 306.85 0.98 -66.43 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.64 Total: 17.90 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 5.62 Total: 19.12 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -4.76 Total: -99.53 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -2.51 Total: -43.71 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.05 Total: 47.66 kcal Atomic # 17 Polarization: -7.79 SS G_CDS: -0.07 Total: -7.86 kcal Total: -67.40 0.98 -66.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230022585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.496 kcal (2) G-P(sol) polarization free energy of solvation -67.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds