Wall clock time and date at job start Tue Mar 31 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34826 * 117.00326 * 2 1 4 4 O 1.21543 * 119.99470 * 359.97438 * 3 2 1 5 5 C 1.47012 * 120.00066 * 180.02562 * 3 2 1 6 6 C 1.38067 * 126.44424 * 180.02562 * 5 3 2 7 7 C 1.39651 * 107.63341 * 179.97438 * 6 5 3 8 8 O 1.36007 * 125.66463 * 179.97438 * 7 6 5 9 9 C 1.42894 * 117.00237 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47628 * 29.99715 * 9 8 7 11 11 C 1.50702 * 109.47457 * 150.00139 * 9 8 7 12 12 H 1.08002 * 119.99446 * 359.97438 * 11 9 8 13 13 C 1.37871 * 120.00072 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 9 15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.53009 * 109.47058 * 270.00055 * 9 8 7 20 20 Cl 1.80292 * 109.46912 * 65.00006 * 19 9 8 21 21 N 1.31239 * 108.67531 * 0.22247 * 7 6 5 22 22 N 1.36722 * 126.44745 * 0.02562 * 5 3 2 23 23 C 1.46495 * 126.10167 * 0.03339 * 22 5 3 24 24 H 1.09007 * 109.47390 * 300.00295 * 1 2 3 25 25 H 1.09001 * 109.47410 * 59.99845 * 1 2 3 26 26 H 1.08998 * 109.47572 * 180.02562 * 1 2 3 27 27 H 1.07993 * 126.18272 * 0.02562 * 6 5 3 28 28 H 0.96999 * 120.00128 * 180.27192 * 14 13 11 29 29 H 1.09000 * 109.46749 * 185.00033 * 19 9 8 30 30 H 1.09000 * 109.46793 * 304.99965 * 19 9 8 31 31 H 1.09009 * 109.46751 * 89.99992 * 23 22 5 32 32 H 1.08991 * 109.47709 * 210.00262 * 23 22 5 33 33 H 1.09004 * 109.47614 * 330.00739 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2206 -0.0005 5 6 3.5322 1.2781 -0.0006 6 6 4.2932 2.4302 -0.0001 7 6 5.6368 2.0496 -0.0004 8 8 6.7009 2.8967 -0.0006 9 6 8.0014 2.3047 -0.0002 10 1 7.9635 1.3439 -0.5136 11 6 8.9686 3.2161 -0.7108 12 1 8.6243 4.1536 -1.1220 13 6 10.2925 2.8528 -0.8369 14 7 11.1354 3.6457 -1.4619 15 14 10.8879 1.2310 -0.1264 16 1 11.3423 1.4403 1.2718 17 1 9.7771 0.2456 -0.1436 18 1 12.0174 0.7179 -0.9424 19 6 8.4655 2.0939 1.4425 20 17 7.3930 0.8897 2.2488 21 7 5.7023 0.7389 -0.0057 22 7 4.4008 0.2223 -0.0016 23 6 4.0352 -1.1963 -0.0031 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.9172 3.4426 0.0011 28 1 12.0660 3.3883 -1.5541 29 1 9.4913 1.7254 1.4440 30 1 8.4186 3.0404 1.9811 31 1 3.9445 -1.5470 -1.0312 32 1 4.8062 -1.7708 0.5102 33 1 3.0826 -1.3266 0.5105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231362189.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:38 Heat of formation + Delta-G solvation = -58.822971 kcal Electronic energy + Delta-G solvation = -20841.826699 eV Core-core repulsion = 17317.051085 eV Total energy + Delta-G solvation = -3524.775614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.52397 -41.18051 -39.47303 -37.68491 -36.80610 -35.38584 -33.78382 -32.19984 -31.81462 -28.76153 -27.47283 -27.13335 -24.87652 -23.78051 -21.88230 -21.21584 -19.57865 -18.99792 -18.13163 -17.81101 -17.66317 -16.94059 -16.89145 -16.40803 -15.79466 -15.16941 -15.04874 -14.98091 -14.70941 -14.63983 -14.35841 -14.04030 -13.55570 -13.31940 -13.12109 -12.95812 -12.66881 -12.43117 -12.17733 -11.97224 -11.89184 -11.84682 -11.51506 -11.31457 -11.15704 -10.90330 -10.08130 -9.41197 -8.50701 -6.62562 -0.26627 1.15945 1.18876 1.24909 1.32664 1.37445 1.39501 1.40953 1.84005 2.13457 2.43293 2.81531 3.37968 3.55047 3.92936 4.01383 4.18956 4.25204 4.33887 4.38091 4.44602 4.47580 4.58977 4.71635 4.79495 4.82280 4.99171 5.05946 5.15828 5.73940 5.89364 6.31466 6.42894 6.48072 6.67472 7.02142 8.64887 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.004653 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.843940 B = 6015.771545 C = 6360.193068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.552 3.448 4 O -0.508 6.508 5 C 0.055 3.945 6 C -0.204 4.204 7 C 0.242 3.758 8 O -0.291 6.291 9 C 0.201 3.799 10 H 0.046 0.954 11 C -0.542 4.542 12 H 0.051 0.949 13 C 0.039 3.961 14 N -0.920 5.920 15 Si 0.919 3.081 16 H -0.247 1.247 17 H -0.244 1.244 18 H -0.275 1.275 19 C -0.050 4.050 20 Cl -0.191 7.191 21 N -0.305 5.305 22 N -0.329 5.329 23 C 0.092 3.908 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.142 0.858 27 H 0.169 0.831 28 H 0.279 0.721 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.173 -13.233 5.173 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.395 3.605 4 O -0.394 6.394 5 C -0.074 4.074 6 C -0.235 4.235 7 C 0.042 3.958 8 O -0.196 6.196 9 C 0.145 3.855 10 H 0.064 0.936 11 C -0.580 4.580 12 H 0.069 0.931 13 C -0.163 4.163 14 N -0.557 5.557 15 Si 0.742 3.258 16 H -0.172 1.172 17 H -0.168 1.168 18 H -0.201 1.201 19 C -0.113 4.113 20 Cl -0.165 7.165 21 N -0.148 5.148 22 N -0.119 5.119 23 C -0.046 4.046 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.160 0.840 27 H 0.187 0.813 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.545 -13.790 5.160 22.905 hybrid contribution 0.235 0.531 0.095 0.588 sum -17.311 -13.259 5.255 22.429 Atomic orbital electron populations 1.23738 0.73082 1.06517 1.03113 1.86572 1.26150 1.29957 1.83669 1.19451 0.85710 0.82566 0.72797 1.90902 1.65550 1.36829 1.46147 1.20066 0.88622 0.88417 1.10299 1.21129 0.88459 0.99767 1.14137 1.20477 0.89029 0.88364 0.97967 1.86340 1.13489 1.31289 1.88460 1.20434 0.78420 0.95388 0.91298 0.93635 1.20854 0.93344 1.06639 1.37117 0.93081 1.25558 0.95798 1.00345 0.94572 1.69934 1.05245 1.38781 1.41747 0.86268 0.79700 0.80249 0.79540 1.17219 1.16777 1.20111 1.25768 0.95062 0.93947 0.96545 1.98660 1.71148 1.63744 1.82959 1.77667 0.99321 1.09159 1.28700 1.48886 1.01232 1.07382 1.54445 1.22471 1.03581 0.73069 1.05524 0.91433 0.91471 0.83965 0.81318 0.91155 0.89486 0.87782 0.88489 0.88416 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 113.37 1.20 1.48 16 2 O -0.35 -5.94 8.06 -57.38 -0.46 -6.40 16 3 C 0.55 13.83 7.94 70.12 0.56 14.39 16 4 O -0.51 -14.92 16.69 19.69 0.33 -14.59 16 5 C 0.05 1.64 6.95 40.64 0.28 1.92 16 6 C -0.20 -7.21 10.63 22.57 0.24 -6.97 16 7 C 0.24 10.02 6.88 85.12 0.59 10.60 16 8 O -0.29 -13.91 9.83 -93.63 -0.92 -14.83 16 9 C 0.20 9.84 1.88 29.85 0.06 9.89 16 10 H 0.05 2.30 6.33 -2.39 -0.02 2.28 16 11 C -0.54 -30.86 9.47 25.60 0.24 -30.61 16 12 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 13 C 0.04 2.16 5.45 84.65 0.46 2.62 16 14 N -0.92 -54.47 13.96 21.45 0.30 -54.17 16 15 Si 0.92 41.03 24.41 68.60 1.67 42.71 16 16 H -0.25 -10.15 6.84 99.48 0.68 -9.47 16 17 H -0.24 -10.53 6.52 99.48 0.65 -9.88 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 C -0.05 -2.17 5.83 71.99 0.42 -1.75 16 20 Cl -0.19 -7.34 26.14 -2.72 -0.07 -7.41 16 21 N -0.31 -11.68 9.50 -170.76 -1.62 -13.30 16 22 N -0.33 -9.66 4.06 -356.37 -1.45 -11.11 16 23 C 0.09 1.65 10.95 127.77 1.40 3.05 16 24 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.17 5.58 8.06 -2.91 -0.02 5.56 16 28 H 0.28 15.17 8.31 -92.71 -0.77 14.39 16 29 H 0.09 3.72 3.23 -2.39 -0.01 3.71 16 30 H 0.10 4.32 8.14 -2.39 -0.02 4.30 16 31 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.12 1.57 6.20 -2.39 -0.01 1.56 16 Total: -1.00 -69.58 298.68 4.28 -65.30 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.06 Total: 9.18 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.44 Total: 4.62 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.77 Total: -78.58 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.05 Total: -35.82 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.67 Total: 42.71 kcal Atomic # 17 Polarization: -7.34 SS G_CDS: -0.07 Total: -7.41 kcal Total: -69.58 4.28 -65.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231362189.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.480 kcal (2) G-P(sol) polarization free energy of solvation -69.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds