Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46767 * 2 1 4 4 O 1.42898 * 109.46692 * 240.00035 * 2 1 3 5 5 C 1.35667 * 117.00075 * 84.62604 * 4 2 1 6 6 C 1.39161 * 119.90891 * 174.63543 * 5 4 2 7 7 C 1.37588 * 120.09577 * 179.72324 * 6 5 4 8 8 C 1.39951 * 119.90350 * 0.27437 * 7 6 5 9 9 C 1.47574 * 120.09372 * 180.02562 * 8 7 6 10 10 O 1.21822 * 119.99785 * 0.02562 * 9 8 7 11 11 C 1.41758 * 119.99899 * 179.97438 * 9 8 7 12 12 H 1.07995 * 120.00261 * 0.02562 * 11 9 8 13 13 C 1.40347 * 119.99603 * 180.02562 * 11 9 8 14 14 N 1.30530 * 120.00480 * 359.97438 * 13 11 9 15 15 Si 1.86809 * 119.99719 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47030 * 59.99699 * 15 13 11 17 17 H 1.48503 * 109.47053 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46867 * 299.99575 * 15 13 11 19 19 C 1.39952 * 119.81338 * 0.02562 * 8 7 6 20 20 C 1.37591 * 119.90414 * 359.97438 * 19 8 7 21 21 C 1.52999 * 109.47239 * 120.00384 * 2 1 3 22 22 F 1.39898 * 109.47265 * 180.02562 * 21 2 1 23 23 F 1.39903 * 109.46626 * 300.00077 * 21 2 1 24 24 F 1.39899 * 109.47167 * 59.99549 * 21 2 1 25 25 H 1.08994 * 109.46790 * 299.99578 * 1 2 3 26 26 H 1.08998 * 109.47289 * 60.00036 * 1 2 3 27 27 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.95079 * 359.97438 * 6 5 4 29 29 H 1.07998 * 120.04846 * 180.29602 * 7 6 5 30 30 H 0.97001 * 120.00157 * 180.02562 * 14 13 11 31 31 H 1.08001 * 120.04395 * 179.97438 * 19 8 7 32 32 H 1.07996 * 119.95009 * 180.02562 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1048 0.0594 -2.3041 6 6 2.6658 -0.5039 -3.4463 7 6 2.7625 0.2341 -4.6034 8 6 2.3008 1.5551 -4.6291 9 6 2.4019 2.3503 -5.8681 10 8 2.8873 1.8570 -6.8706 11 6 1.9331 3.6879 -5.8920 12 1 1.5024 4.1252 -5.0033 13 6 2.0288 4.4440 -7.0705 14 7 2.5498 3.9158 -8.1444 15 14 1.4117 6.2070 -7.1018 16 1 2.1564 7.0099 -6.0989 17 1 1.6248 6.7821 -8.4542 18 1 -0.0372 6.2300 -6.7774 19 6 1.7430 2.1197 -3.4764 20 6 1.6502 1.3745 -2.3234 21 6 2.0401 -0.7213 1.2492 22 9 3.4391 -0.7208 1.2495 23 9 1.5737 -0.0618 2.3915 24 9 1.5737 -2.0403 1.2492 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0222 -1.5233 -3.4255 29 1 3.1936 -0.2053 -5.4907 30 1 2.6162 4.4385 -8.9588 31 1 1.3859 3.1389 -3.4919 32 1 1.2195 1.8094 -1.4336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233518129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = -209.659180 kcal Electronic energy + Delta-G solvation = -22248.680609 eV Core-core repulsion = 18145.647604 eV Total energy + Delta-G solvation = -4103.033005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.35900 -47.89916 -47.79606 -40.15869 -37.81738 -35.87297 -32.82026 -32.73005 -30.53994 -29.58505 -26.90675 -26.52305 -23.45144 -22.54897 -21.59454 -19.78432 -19.08339 -18.68723 -17.93316 -17.71596 -16.73131 -15.69303 -15.48681 -15.15486 -14.72706 -14.60932 -14.40636 -14.26020 -14.07903 -13.97173 -13.96035 -13.53174 -13.29043 -13.00063 -12.73447 -12.60533 -12.33043 -11.93605 -11.82285 -11.46504 -11.32977 -11.16429 -10.71779 -10.60928 -10.42489 -10.06312 -9.03283 -8.56615 -7.66547 -7.55837 -6.37187 -4.98058 1.66223 1.86476 2.14370 2.92019 3.01989 3.08184 3.09598 3.44728 3.68768 3.91663 3.94869 4.10878 4.43829 4.54454 4.59069 5.07229 5.18798 5.21887 5.30246 5.70941 5.73437 5.74691 5.91125 6.01766 6.11706 6.48991 6.65748 6.91916 7.09747 7.17313 7.24850 7.59691 7.94770 8.71947 8.76149 10.24213 10.45894 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.003504 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.985252 B = 7988.541045 C = 8532.478264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.042 3.958 3 H 0.116 0.884 4 O -0.299 6.299 5 C 0.104 3.896 6 C -0.153 4.153 7 C -0.056 4.056 8 C -0.129 4.129 9 C 0.387 3.613 10 O -0.542 6.542 11 C -0.517 4.517 12 H 0.073 0.927 13 C 0.079 3.921 14 N -0.734 5.734 15 Si 0.907 3.093 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.056 4.056 20 C -0.219 4.219 21 C 0.463 3.537 22 F -0.175 7.175 23 F -0.175 7.175 24 F -0.174 7.174 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.135 0.865 30 H 0.275 0.725 31 H 0.135 0.865 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 -4.766 16.813 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.017 4.017 3 H 0.134 0.866 4 O -0.214 6.214 5 C 0.061 3.939 6 C -0.171 4.171 7 C -0.074 4.074 8 C -0.130 4.130 9 C 0.283 3.717 10 O -0.432 6.432 11 C -0.548 4.548 12 H 0.092 0.908 13 C -0.144 4.144 14 N -0.362 5.362 15 Si 0.730 3.270 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.189 1.189 19 C -0.074 4.074 20 C -0.238 4.238 21 C 0.409 3.591 22 F -0.156 7.156 23 F -0.156 7.156 24 F -0.155 7.155 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.143 0.857 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.567 -5.257 16.216 17.416 hybrid contribution -0.333 0.970 0.488 1.136 sum -3.899 -4.286 16.704 17.681 Atomic orbital electron populations 1.22429 0.91508 1.05186 1.05116 1.23341 0.97476 0.97749 0.83136 0.86601 1.85998 1.81873 1.37566 1.15917 1.19041 0.98883 0.90688 0.85302 1.20307 1.04742 1.00957 0.91125 1.21262 0.95946 0.93620 0.96577 1.21912 0.97802 0.94970 0.98336 1.18061 0.81347 0.87673 0.84620 1.90513 1.44846 1.73054 1.34799 1.20896 1.37826 0.98560 0.97482 0.90839 1.26006 0.93393 1.00022 0.95000 1.69941 1.28690 1.36647 1.00915 0.86428 0.80187 0.81987 0.78350 1.18873 1.20207 1.18881 1.21366 0.95401 0.99682 0.90986 1.21141 1.08490 0.94056 1.00116 1.20216 0.75872 0.77916 0.85143 1.93227 1.29361 1.96323 1.96709 1.93200 1.88574 1.80884 1.52938 1.93204 1.88282 1.37287 1.96718 0.89783 0.89058 0.90054 0.85719 0.84711 0.91338 0.84772 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 8.92 37.16 0.33 -1.32 16 2 C 0.04 0.46 2.20 -26.73 -0.06 0.40 16 3 H 0.12 1.12 6.30 -51.93 -0.33 0.80 16 4 O -0.30 -4.25 9.68 -18.70 -0.18 -4.43 16 5 C 0.10 1.68 6.61 -38.90 -0.26 1.42 16 6 C -0.15 -2.64 9.97 -39.48 -0.39 -3.04 16 7 C -0.06 -1.13 9.59 -39.18 -0.38 -1.51 16 8 C -0.13 -2.90 5.89 -104.81 -0.62 -3.52 16 9 C 0.39 10.64 6.91 -34.43 -0.24 10.40 16 10 O -0.54 -16.87 14.89 5.08 0.08 -16.80 16 11 C -0.52 -13.71 8.86 -37.44 -0.33 -14.04 16 12 H 0.07 1.74 6.01 -52.49 -0.32 1.42 16 13 C 0.08 2.08 5.50 -17.31 -0.10 1.98 16 14 N -0.73 -20.66 11.73 55.57 0.65 -20.01 16 15 Si 0.91 18.64 29.56 -169.99 -5.03 13.61 16 16 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 19 C -0.06 -1.06 9.43 -39.18 -0.37 -1.42 16 20 C -0.22 -3.43 8.20 -39.47 -0.32 -3.75 16 21 C 0.46 5.08 2.85 37.16 0.11 5.19 16 22 F -0.17 -2.17 17.26 2.25 0.04 -2.13 16 23 F -0.17 -1.73 16.80 2.25 0.04 -1.70 16 24 F -0.17 -2.04 16.74 2.25 0.04 -2.00 16 25 H 0.08 0.57 7.80 -51.93 -0.41 0.17 16 26 H 0.09 0.85 6.89 -51.93 -0.36 0.49 16 27 H 0.08 0.73 7.80 -51.93 -0.41 0.33 16 28 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 29 H 0.14 2.79 7.65 -52.49 -0.40 2.39 16 30 H 0.28 6.96 8.29 -40.82 -0.34 6.62 16 31 H 0.13 2.40 6.19 -52.49 -0.33 2.08 16 32 H 0.12 1.47 5.41 -52.49 -0.28 1.18 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -31.28 293.30 -4.94 -36.23 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.38 Total: 2.01 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.62 Total: -9.21 kcal Atomic # 7 Polarization: -20.66 SS G_CDS: 0.65 Total: -20.01 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.11 Total: -21.23 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.11 Total: -5.83 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.28 -4.94 -36.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233518129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.433 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds