Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46767 * 2 1 4 4 O 1.42898 * 109.46692 * 240.00035 * 2 1 3 5 5 C 1.35667 * 117.00075 * 84.62604 * 4 2 1 6 6 C 1.39161 * 119.90891 * 174.63543 * 5 4 2 7 7 C 1.37588 * 120.09577 * 179.72324 * 6 5 4 8 8 C 1.39951 * 119.90350 * 0.27437 * 7 6 5 9 9 C 1.47574 * 120.09372 * 180.02562 * 8 7 6 10 10 O 1.21822 * 119.99785 * 0.02562 * 9 8 7 11 11 C 1.41758 * 119.99899 * 179.97438 * 9 8 7 12 12 H 1.07995 * 120.00261 * 0.02562 * 11 9 8 13 13 C 1.40347 * 119.99603 * 180.02562 * 11 9 8 14 14 N 1.30530 * 120.00480 * 359.97438 * 13 11 9 15 15 Si 1.86809 * 119.99719 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47030 * 59.99699 * 15 13 11 17 17 H 1.48503 * 109.47053 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46867 * 299.99575 * 15 13 11 19 19 C 1.39952 * 119.81338 * 0.02562 * 8 7 6 20 20 C 1.37591 * 119.90414 * 359.97438 * 19 8 7 21 21 C 1.52999 * 109.47239 * 120.00384 * 2 1 3 22 22 F 1.39898 * 109.47265 * 180.02562 * 21 2 1 23 23 F 1.39903 * 109.46626 * 300.00077 * 21 2 1 24 24 F 1.39899 * 109.47167 * 59.99549 * 21 2 1 25 25 H 1.08994 * 109.46790 * 299.99578 * 1 2 3 26 26 H 1.08998 * 109.47289 * 60.00036 * 1 2 3 27 27 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.95079 * 359.97438 * 6 5 4 29 29 H 1.07998 * 120.04846 * 180.29602 * 7 6 5 30 30 H 0.97001 * 120.00157 * 180.02562 * 14 13 11 31 31 H 1.08001 * 120.04395 * 179.97438 * 19 8 7 32 32 H 1.07996 * 119.95009 * 180.02562 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1048 0.0594 -2.3041 6 6 2.6658 -0.5039 -3.4463 7 6 2.7625 0.2341 -4.6034 8 6 2.3008 1.5551 -4.6291 9 6 2.4019 2.3503 -5.8681 10 8 2.8873 1.8570 -6.8706 11 6 1.9331 3.6879 -5.8920 12 1 1.5024 4.1252 -5.0033 13 6 2.0288 4.4440 -7.0705 14 7 2.5498 3.9158 -8.1444 15 14 1.4117 6.2070 -7.1018 16 1 2.1564 7.0099 -6.0989 17 1 1.6248 6.7821 -8.4542 18 1 -0.0372 6.2300 -6.7774 19 6 1.7430 2.1197 -3.4764 20 6 1.6502 1.3745 -2.3234 21 6 2.0401 -0.7213 1.2492 22 9 3.4391 -0.7208 1.2495 23 9 1.5737 -0.0618 2.3915 24 9 1.5737 -2.0403 1.2492 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0222 -1.5233 -3.4255 29 1 3.1936 -0.2053 -5.4907 30 1 2.6162 4.4385 -8.9588 31 1 1.3859 3.1389 -3.4919 32 1 1.2195 1.8094 -1.4336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233518129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = -228.605515 kcal Electronic energy + Delta-G solvation = -22249.502184 eV Core-core repulsion = 18145.647604 eV Total energy + Delta-G solvation = -4103.854580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.22210 -48.74289 -48.69439 -41.40010 -39.43075 -37.63705 -34.78017 -33.76711 -31.95357 -31.13951 -28.64486 -27.48897 -24.78948 -23.94382 -22.83725 -21.42891 -20.08971 -19.57572 -18.94707 -18.78736 -18.58387 -17.47958 -16.58296 -16.38715 -15.99537 -15.68199 -15.53296 -15.45783 -15.12953 -14.91066 -14.87014 -14.84106 -14.58583 -14.46010 -14.38188 -13.86048 -13.43779 -13.29010 -13.23489 -12.98276 -12.71431 -12.52839 -12.31627 -12.08073 -12.01351 -11.61393 -10.96880 -9.98180 -9.61676 -9.15281 -8.33603 -7.06998 0.15400 0.43901 1.19385 1.40106 1.42065 1.55379 1.94060 2.19605 2.22060 2.58995 2.81087 2.87945 3.23486 3.59996 3.73864 3.75986 3.86511 3.94651 4.24136 4.34130 4.50633 4.57412 4.61207 4.73313 5.05616 5.09776 5.16906 5.26462 5.41325 5.66998 5.72803 5.96988 6.25156 6.70448 6.80879 8.25816 8.49909 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.003504 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.985252 B = 7988.541045 C = 8532.478264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.033 3.967 3 H 0.136 0.864 4 O -0.304 6.304 5 C 0.125 3.875 6 C -0.154 4.154 7 C -0.067 4.067 8 C -0.173 4.173 9 C 0.362 3.638 10 O -0.601 6.601 11 C -0.542 4.542 12 H 0.100 0.900 13 C 0.022 3.978 14 N -0.789 5.789 15 Si 0.996 3.004 16 H -0.250 1.250 17 H -0.273 1.273 18 H -0.249 1.249 19 C -0.052 4.052 20 C -0.203 4.203 21 C 0.466 3.534 22 F -0.185 7.185 23 F -0.165 7.165 24 F -0.179 7.179 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.114 0.886 30 H 0.282 0.718 31 H 0.143 0.857 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -3.421 19.967 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 H 0.154 0.846 4 O -0.219 6.219 5 C 0.081 3.919 6 C -0.173 4.173 7 C -0.086 4.086 8 C -0.174 4.174 9 C 0.262 3.738 10 O -0.496 6.496 11 C -0.572 4.572 12 H 0.117 0.883 13 C -0.197 4.197 14 N -0.418 5.418 15 Si 0.814 3.186 16 H -0.173 1.173 17 H -0.197 1.197 18 H -0.173 1.173 19 C -0.070 4.070 20 C -0.221 4.221 21 C 0.412 3.588 22 F -0.166 7.166 23 F -0.147 7.147 24 F -0.161 7.161 25 H 0.128 0.872 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.163 0.837 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.161 0.839 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.173 -3.926 19.416 20.473 hybrid contribution 0.158 0.415 -0.304 0.538 sum -5.015 -3.511 19.112 20.069 Atomic orbital electron populations 1.22477 0.89577 1.05575 1.06428 1.23722 0.98947 0.98330 0.81475 0.84643 1.85992 1.81714 1.37983 1.16189 1.19034 0.96641 0.90709 0.85520 1.20397 1.04648 1.01619 0.90599 1.21120 0.96683 0.93465 0.97289 1.21528 1.02114 0.95799 0.97974 1.18830 0.80315 0.88905 0.85726 1.90452 1.47451 1.74353 1.37326 1.21451 1.38018 0.98807 0.98953 0.88255 1.27313 0.92751 1.05606 0.94028 1.70107 1.30305 1.39277 1.02069 0.85094 0.80101 0.74635 0.78777 1.17350 1.19744 1.17291 1.21411 0.94626 1.00281 0.90651 1.21451 1.06981 0.93378 1.00337 1.20208 0.75368 0.77735 0.85495 1.93214 1.30292 1.96353 1.96782 1.93223 1.88384 1.80631 1.52435 1.93199 1.88277 1.37815 1.96769 0.87194 0.88981 0.90269 0.83702 0.86815 0.90782 0.83905 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.92 71.98 0.64 -1.81 16 2 C 0.03 0.59 2.20 30.60 0.07 0.65 16 3 H 0.14 1.91 6.30 -2.39 -0.02 1.90 16 4 O -0.30 -7.62 9.68 -89.83 -0.87 -8.49 16 5 C 0.13 3.69 6.61 22.71 0.15 3.84 16 6 C -0.15 -5.21 9.97 22.34 0.22 -4.99 16 7 C -0.07 -2.84 9.59 22.53 0.22 -2.62 16 8 C -0.17 -8.02 5.89 -19.98 -0.12 -8.14 16 9 C 0.36 20.97 6.91 25.61 0.18 21.14 16 10 O -0.60 -40.17 14.89 -4.74 -0.07 -40.24 16 11 C -0.54 -29.39 8.86 23.65 0.21 -29.18 16 12 H 0.10 4.64 6.01 -2.91 -0.02 4.62 16 13 C 0.02 1.17 5.50 85.40 0.47 1.64 16 14 N -0.79 -46.37 11.73 21.89 0.26 -46.11 16 15 Si 1.00 37.95 29.56 68.60 2.03 39.97 16 16 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 17 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 19 C -0.05 -1.87 9.43 22.53 0.21 -1.65 16 20 C -0.20 -5.65 8.20 22.34 0.18 -5.46 16 21 C 0.47 8.72 2.85 71.98 0.21 8.92 16 22 F -0.18 -4.12 17.26 44.97 0.78 -3.34 16 23 F -0.17 -2.69 16.80 44.97 0.76 -1.94 16 24 F -0.18 -3.73 16.74 44.97 0.75 -2.98 16 25 H 0.11 0.94 7.80 -2.39 -0.02 0.92 16 26 H 0.09 1.27 6.89 -2.39 -0.02 1.26 16 27 H 0.08 1.13 7.80 -2.39 -0.02 1.11 16 28 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 29 H 0.11 5.14 7.65 -2.91 -0.02 5.12 16 30 H 0.28 14.83 8.29 -92.71 -0.77 14.06 16 31 H 0.14 4.82 6.19 -2.91 -0.02 4.81 16 32 H 0.17 3.09 5.41 -2.91 -0.02 3.07 16 Total: -1.00 -72.85 293.30 7.45 -65.40 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.19 Total: 15.39 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 2.64 Total: -17.67 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.26 Total: -46.11 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -0.94 Total: -48.73 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 2.28 Total: -8.26 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.97 kcal Total: -72.85 7.45 -65.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233518129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.207 kcal (2) G-P(sol) polarization free energy of solvation -72.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds