Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47576 * 2 1 4 4 O 1.42899 * 109.47098 * 240.00030 * 2 1 3 5 5 C 1.35635 * 116.99968 * 84.79605 * 4 2 1 6 6 C 1.38665 * 120.16090 * 354.58736 * 5 4 2 7 7 C 1.38089 * 120.09045 * 180.27406 * 6 5 4 8 8 C 1.38681 * 120.42134 * 359.97438 * 7 6 5 9 9 C 1.37709 * 120.31796 * 0.02562 * 8 7 6 10 10 C 1.39841 * 119.90248 * 359.97438 * 9 8 7 11 11 C 1.47532 * 120.20635 * 180.02562 * 10 9 8 12 12 O 1.21809 * 119.99952 * 179.97438 * 11 10 9 13 13 C 1.41833 * 119.99887 * 359.97438 * 11 10 9 14 14 H 1.08005 * 120.00067 * 0.02562 * 13 11 10 15 15 C 1.40322 * 119.99958 * 179.97438 * 13 11 10 16 16 N 1.30538 * 119.99978 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00083 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47146 * 90.00139 * 17 15 13 19 19 H 1.48498 * 109.47486 * 210.00090 * 17 15 13 20 20 H 1.48501 * 109.47014 * 330.00402 * 17 15 13 21 21 C 1.53002 * 109.47042 * 120.00103 * 2 1 3 22 22 F 1.39902 * 109.47296 * 179.97438 * 21 2 1 23 23 F 1.39897 * 109.46973 * 300.00032 * 21 2 1 24 24 F 1.39905 * 109.47124 * 60.00002 * 21 2 1 25 25 H 1.08999 * 109.47132 * 59.99887 * 1 2 3 26 26 H 1.08997 * 109.47576 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46870 * 300.00029 * 1 2 3 28 28 H 1.08001 * 119.95660 * 0.27556 * 6 5 4 29 29 H 1.08005 * 119.78794 * 180.02562 * 7 6 5 30 30 H 1.07998 * 119.84299 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.04747 * 179.97438 * 9 8 7 32 32 H 0.96996 * 120.00309 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1082 0.0601 -2.3030 6 6 1.6536 1.3699 -2.3296 7 6 1.7529 2.1137 -3.4888 8 6 2.3069 1.5600 -4.6332 9 6 2.7638 0.2610 -4.6258 10 6 2.6698 -0.5045 -3.4593 11 6 3.1578 -1.8967 -3.4438 12 8 3.0745 -2.5599 -2.4255 13 6 3.7238 -2.4629 -4.6146 14 1 3.7980 -1.8747 -5.5174 15 6 4.1884 -3.7869 -4.5997 16 7 4.0992 -4.4976 -3.5084 17 14 4.9346 -4.5323 -6.1414 18 1 6.3982 -4.2812 -6.1542 19 1 4.6833 -5.9958 -6.1552 20 1 4.3155 -3.9124 -7.3404 21 6 2.0400 -0.7213 1.2493 22 9 3.4390 -0.7218 1.2490 23 9 1.5736 -0.0618 2.3915 24 9 1.5736 -2.0403 1.2492 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2212 1.8088 -1.4426 29 1 1.3976 3.1336 -3.5039 30 1 2.3803 2.1504 -5.5345 31 1 3.1941 -0.1660 -5.5197 32 1 4.4200 -5.4130 -3.4982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523303.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -224.273960 kcal Electronic energy + Delta-G solvation = -23265.403925 eV Core-core repulsion = 19161.737176 eV Total energy + Delta-G solvation = -4103.666749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.23946 -48.76449 -48.70967 -41.32795 -38.93048 -37.87524 -34.73624 -33.57988 -32.13271 -30.62139 -28.69161 -27.51190 -24.61501 -24.22413 -22.38332 -21.64402 -19.93825 -19.60646 -18.92840 -18.77345 -18.31749 -17.32829 -16.47696 -16.33148 -16.10330 -15.67339 -15.54695 -15.32217 -15.14558 -14.99293 -14.90625 -14.84770 -14.78282 -14.28379 -14.15069 -13.83859 -13.25492 -13.19809 -13.14843 -12.74799 -12.67059 -12.48548 -12.11083 -12.07390 -12.00510 -11.78854 -10.96720 -9.74464 -9.46927 -9.07715 -8.27011 -7.00753 0.24992 0.54845 1.29819 1.37419 1.39024 1.54648 2.06827 2.22108 2.29835 2.59659 2.82670 2.92113 3.28125 3.57564 3.73824 3.81834 3.96180 4.00774 4.32286 4.44006 4.52386 4.56338 4.62708 4.83285 5.01765 5.15439 5.23668 5.35237 5.53287 5.70124 5.93635 6.03932 6.44268 6.75130 6.88102 8.34479 8.56828 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.006131 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.102000 B = 4565.840470 C = 5908.276606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.027 3.973 3 H 0.139 0.861 4 O -0.295 6.295 5 C 0.125 3.875 6 C -0.219 4.219 7 C -0.069 4.069 8 C -0.161 4.161 9 C -0.064 4.064 10 C -0.186 4.186 11 C 0.363 3.637 12 O -0.574 6.574 13 C -0.550 4.550 14 H 0.094 0.906 15 C 0.022 3.978 16 N -0.793 5.793 17 Si 0.994 3.006 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.243 1.243 21 C 0.460 3.540 22 F -0.191 7.191 23 F -0.162 7.162 24 F -0.186 7.186 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.159 0.841 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.134 0.866 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.348 14.354 2.219 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.031 4.031 3 H 0.156 0.844 4 O -0.208 6.208 5 C 0.080 3.920 6 C -0.237 4.237 7 C -0.087 4.087 8 C -0.179 4.179 9 C -0.082 4.082 10 C -0.188 4.188 11 C 0.261 3.739 12 O -0.466 6.466 13 C -0.581 4.581 14 H 0.112 0.888 15 C -0.196 4.196 16 N -0.422 5.422 17 Si 0.812 3.188 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.166 1.166 21 C 0.406 3.594 22 F -0.172 7.172 23 F -0.143 7.143 24 F -0.168 7.168 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.177 0.823 29 H 0.187 0.813 30 H 0.176 0.824 31 H 0.151 0.849 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.337 13.693 2.904 15.365 hybrid contribution 0.599 -0.966 -0.022 1.137 sum -5.738 12.727 2.882 14.255 Atomic orbital electron populations 1.22420 0.89454 1.04771 1.06584 1.23748 0.99076 0.97906 0.82365 0.84359 1.86468 1.80767 1.37290 1.16303 1.19573 0.95799 0.91330 0.85319 1.21492 1.07743 0.92261 1.02198 1.21474 0.95687 1.00580 0.90938 1.21434 1.01492 0.94559 1.00394 1.21501 0.96355 0.94266 0.96084 1.21242 1.04612 0.99332 0.93605 1.18782 0.80376 0.85455 0.89311 1.90508 1.56780 1.63408 1.35887 1.21436 1.38198 0.98730 0.99742 0.88832 1.27262 0.94124 0.97446 1.00784 1.70143 1.32914 1.08962 1.30211 0.85076 0.79030 0.77478 0.77167 1.18400 1.19603 1.16608 1.20414 0.75256 0.77783 0.85923 1.93190 1.30854 1.96376 1.96805 1.93192 1.88287 1.80409 1.52397 1.93195 1.88303 1.38519 1.96778 0.88395 0.91906 0.86559 0.82341 0.81311 0.82406 0.84855 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.12 8.93 71.98 0.64 -3.48 16 2 C 0.03 0.84 2.20 30.60 0.07 0.91 16 3 H 0.14 3.27 6.32 -2.39 -0.02 3.25 16 4 O -0.30 -13.27 7.77 -68.61 -0.53 -13.81 16 5 C 0.13 5.25 6.62 22.90 0.15 5.40 16 6 C -0.22 -6.30 8.23 22.34 0.18 -6.12 16 7 C -0.07 -1.65 10.03 22.34 0.22 -1.43 16 8 C -0.16 -4.42 10.02 22.25 0.22 -4.20 16 9 C -0.06 -2.44 9.43 22.53 0.21 -2.23 16 10 C -0.19 -9.03 5.90 -19.91 -0.12 -9.14 16 11 C 0.36 22.11 6.91 25.61 0.18 22.28 16 12 O -0.57 -39.93 13.71 16.18 0.22 -39.71 16 13 C -0.55 -31.64 8.86 23.67 0.21 -31.43 16 14 H 0.09 4.73 6.02 -2.91 -0.02 4.72 16 15 C 0.02 1.22 5.50 85.39 0.47 1.69 16 16 N -0.79 -49.07 11.73 21.88 0.26 -48.81 16 17 Si 0.99 40.54 29.56 68.60 2.03 42.57 16 18 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 20 H -0.24 -9.08 7.11 99.48 0.71 -8.38 16 21 C 0.46 15.54 2.85 71.98 0.21 15.75 16 22 F -0.19 -7.46 17.26 44.97 0.78 -6.69 16 23 F -0.16 -4.28 16.80 44.97 0.76 -3.53 16 24 F -0.19 -7.42 16.74 44.97 0.75 -6.66 16 25 H 0.10 2.04 6.90 -2.39 -0.02 2.03 16 26 H 0.06 1.75 7.80 -2.39 -0.02 1.73 16 27 H 0.12 1.85 7.80 -2.39 -0.02 1.83 16 28 H 0.16 3.25 5.43 -2.91 -0.02 3.24 16 29 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.13 4.96 6.20 -2.91 -0.02 4.94 16 32 H 0.28 15.50 8.29 -92.71 -0.77 14.73 16 Total: -1.00 -82.57 291.26 8.09 -74.48 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.19 Total: 14.14 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 2.65 Total: -11.99 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.26 Total: -48.81 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.31 Total: -53.51 kcal Atomic # 9 Polarization: -19.16 SS G_CDS: 2.28 Total: -16.88 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -82.57 8.09 -74.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523303.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.795 kcal (2) G-P(sol) polarization free energy of solvation -82.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds