Wall clock time and date at job start Tue Mar 31 2020 05:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35987 * 117.00433 * 2 1 4 4 C 1.38625 * 120.06120 * 0.02686 * 3 2 1 5 5 C 1.38214 * 120.04079 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.92272 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.15818 * 0.02562 * 5 4 3 8 8 C 1.38405 * 120.12144 * 359.69566 * 7 5 4 9 9 F 1.35099 * 120.02396 * 180.28336 * 8 7 5 10 10 C 1.38759 * 119.95858 * 0.55815 * 8 7 5 11 11 O 1.36058 * 120.07873 * 179.74706 * 10 8 7 12 12 C 1.42903 * 116.99923 * 275.25178 * 11 10 8 13 13 H 1.08999 * 109.46540 * 34.70399 * 12 11 10 14 14 C 1.50696 * 109.46862 * 154.69992 * 12 11 10 15 15 H 1.07998 * 120.00394 * 5.56143 * 14 12 11 16 16 C 1.37880 * 119.99912 * 185.28595 * 14 12 11 17 17 N 1.31515 * 119.99721 * 355.48638 * 16 14 12 18 18 Si 1.86796 * 119.99911 * 175.49058 * 16 14 12 19 19 H 1.48502 * 109.47051 * 95.00104 * 18 16 14 20 20 H 1.48499 * 109.47020 * 214.99442 * 18 16 14 21 21 H 1.48496 * 109.47367 * 334.99926 * 18 16 14 22 22 C 1.53002 * 109.47117 * 274.70507 * 12 11 10 23 23 Cl 1.80301 * 109.46894 * 295.77968 * 22 12 11 24 24 H 1.08997 * 109.47774 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46545 * 300.00103 * 1 2 3 26 26 H 1.09005 * 109.46981 * 59.99439 * 1 2 3 27 27 H 1.08000 * 119.98107 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47372 * 90.00000 * 6 5 4 29 29 H 1.09004 * 109.47694 * 210.00309 * 6 5 4 30 30 H 1.09006 * 109.46896 * 330.00136 * 6 5 4 31 31 H 1.08005 * 119.93788 * 179.97438 * 7 5 4 32 32 H 0.97001 * 120.00044 * 179.97438 * 17 16 14 33 33 H 1.08997 * 109.47316 * 55.78256 * 22 12 11 34 34 H 1.09006 * 109.46421 * 175.78389 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2928 2.3751 0.0006 5 6 1.9208 3.6063 0.0011 6 6 1.0989 4.8694 0.0011 7 6 3.3014 3.6819 0.0005 8 6 4.0604 2.5245 0.0058 9 9 5.4092 2.6007 0.0110 10 6 3.4351 1.2858 -0.0001 11 8 4.1788 0.1465 -0.0001 12 6 4.6362 -0.3297 -1.2675 13 1 4.8595 0.5183 -1.9150 14 6 5.8816 -1.1558 -1.0740 15 1 6.2330 -1.3777 -0.0772 16 6 6.5693 -1.6331 -2.1696 17 7 6.0910 -1.4436 -3.3799 18 14 8.1802 -2.5491 -1.9347 19 1 7.9190 -4.0107 -1.9063 20 1 9.0982 -2.2322 -3.0581 21 1 8.8041 -2.1328 -0.6530 22 6 3.5479 -1.1907 -1.9118 23 17 3.2660 -2.6577 -0.9023 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2142 2.3194 0.0006 28 1 0.9003 5.1737 1.0288 29 1 1.6468 5.6596 -0.5124 30 1 0.1549 4.6886 -0.5131 31 1 3.7885 4.6459 0.0005 32 1 6.5749 -1.7791 -4.1507 33 1 2.6245 -0.6159 -1.9832 34 1 3.8664 -1.4920 -2.9098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234229120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:08 Heat of formation + Delta-G solvation = -110.446271 kcal Electronic energy + Delta-G solvation = -21369.126446 eV Core-core repulsion = 17822.192316 eV Total energy + Delta-G solvation = -3546.934130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.38274 -40.07478 -37.53966 -37.00654 -34.44641 -33.11251 -31.53619 -29.71667 -29.12369 -27.62345 -25.89878 -25.13491 -22.19740 -21.77869 -20.64717 -17.78685 -17.00309 -16.77054 -16.58622 -15.72339 -15.67133 -14.99222 -14.84523 -14.36870 -14.12565 -13.60823 -13.55476 -13.38429 -12.99638 -12.61304 -12.37897 -12.06272 -11.89114 -11.79119 -11.62943 -11.34420 -11.09381 -10.87319 -10.71466 -10.53343 -10.24913 -9.59331 -9.20357 -8.90838 -8.73683 -8.35766 -8.25699 -7.79111 -6.16861 -4.17318 1.30180 1.46266 3.31887 3.37356 3.38293 3.43060 3.62863 3.84683 4.32509 4.50712 4.76608 4.77984 5.12546 5.18406 5.22071 5.25198 5.25441 5.38619 5.50266 5.59675 5.62656 5.72712 6.09218 6.12649 6.28005 6.33761 6.49478 6.53355 6.86011 6.98737 7.14422 7.51334 7.82021 8.03965 8.56118 8.95070 9.47788 10.93016 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.006450 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.896036 B = 4339.899686 C = 5420.754753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.283 6.283 3 C 0.133 3.867 4 C -0.214 4.214 5 C -0.043 4.043 6 C -0.109 4.109 7 C -0.185 4.185 8 C 0.115 3.885 9 F -0.122 7.122 10 C 0.049 3.951 11 O -0.310 6.310 12 C 0.216 3.784 13 H 0.035 0.965 14 C -0.494 4.494 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.900 5.900 18 Si 0.909 3.091 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.024 4.024 23 Cl -0.203 7.203 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.132 0.868 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.266 0.734 33 H 0.049 0.951 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.975 9.358 3.939 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.195 6.195 3 C 0.087 3.913 4 C -0.233 4.233 5 C -0.044 4.044 6 C -0.166 4.166 7 C -0.204 4.204 8 C 0.094 3.906 9 F -0.100 7.100 10 C 0.002 3.998 11 O -0.227 6.227 12 C 0.162 3.838 13 H 0.053 0.947 14 C -0.532 4.532 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.539 5.539 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.087 4.087 23 Cl -0.177 7.177 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.749 8.888 3.963 15.256 hybrid contribution 0.702 -0.313 -0.232 0.802 sum -11.047 8.576 3.731 14.474 Atomic orbital electron populations 1.23068 0.79258 1.03934 1.00724 1.86383 1.20312 1.25112 1.87725 1.19170 0.91128 0.85075 0.95969 1.20982 0.99884 0.91251 1.11194 1.19341 0.92747 0.94740 0.97543 1.20749 0.99137 0.94313 1.02384 1.20771 0.93529 0.97198 1.08906 1.17807 0.77701 0.93173 1.01870 1.91536 1.28172 1.96932 1.93393 1.18122 0.87820 0.87590 1.06250 1.86285 1.67304 1.35812 1.33311 1.20423 0.91646 0.92800 0.78884 0.94705 1.20831 1.06849 1.31501 0.94007 0.91053 1.24808 0.98266 0.95880 0.94661 1.69829 1.39161 1.46830 0.98053 0.86279 0.82341 0.79802 0.77929 1.20435 1.21132 1.19531 1.24949 0.98704 0.87104 0.97934 1.98596 1.96940 1.46806 1.75403 0.88228 0.92980 0.92975 0.85030 0.90981 0.91296 0.91473 0.84820 0.92467 0.93254 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.28 -4.92 8.84 -34.24 -0.30 -5.23 16 3 C 0.13 2.35 6.33 -39.13 -0.25 2.10 16 4 C -0.21 -2.96 8.69 -39.45 -0.34 -3.30 16 5 C -0.04 -0.56 5.88 -104.62 -0.62 -1.18 16 6 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 7 C -0.18 -2.76 9.67 -39.51 -0.38 -3.14 16 8 C 0.11 2.19 7.31 -39.33 -0.29 1.90 16 9 F -0.12 -2.56 17.11 2.25 0.04 -2.53 16 10 C 0.05 1.02 5.50 -39.08 -0.22 0.81 16 11 O -0.31 -7.66 9.17 -34.47 -0.32 -7.98 16 12 C 0.22 5.61 2.42 -27.88 -0.07 5.55 16 13 H 0.04 0.97 7.96 -51.93 -0.41 0.56 16 14 C -0.49 -13.86 7.93 -34.44 -0.27 -14.13 16 15 H 0.07 2.07 7.82 -52.49 -0.41 1.66 16 16 C 0.07 1.79 5.36 -17.82 -0.10 1.69 16 17 N -0.90 -25.03 11.59 55.43 0.64 -24.39 16 18 Si 0.91 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.02 -0.57 6.01 37.16 0.22 -0.34 16 23 Cl -0.20 -4.79 28.14 -51.86 -1.46 -6.25 16 24 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.05 1.09 6.50 -51.93 -0.34 0.75 16 34 H 0.11 2.94 6.43 -51.93 -0.33 2.60 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -30.57 309.78 -6.57 -37.14 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -3.86 Total: -2.83 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.95 Total: -9.35 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.64 Total: -24.39 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.62 Total: -13.21 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -4.79 SS G_CDS: -1.46 Total: -6.25 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.57 -6.57 -37.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234229120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.310 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds