Wall clock time and date at job start Tue Mar 31 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35987 * 117.00433 * 2 1 4 4 C 1.38625 * 120.06120 * 0.02686 * 3 2 1 5 5 C 1.38214 * 120.04079 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.92272 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.15818 * 0.02562 * 5 4 3 8 8 C 1.38405 * 120.12144 * 359.69566 * 7 5 4 9 9 F 1.35099 * 120.02396 * 180.28336 * 8 7 5 10 10 C 1.38759 * 119.95858 * 0.55815 * 8 7 5 11 11 O 1.36058 * 120.07873 * 179.74706 * 10 8 7 12 12 C 1.42903 * 116.99923 * 275.25178 * 11 10 8 13 13 H 1.08999 * 109.46540 * 34.70399 * 12 11 10 14 14 C 1.50696 * 109.46862 * 154.69992 * 12 11 10 15 15 H 1.07998 * 120.00394 * 5.56143 * 14 12 11 16 16 C 1.37880 * 119.99912 * 185.28595 * 14 12 11 17 17 N 1.31515 * 119.99721 * 355.48638 * 16 14 12 18 18 Si 1.86796 * 119.99911 * 175.49058 * 16 14 12 19 19 H 1.48502 * 109.47051 * 95.00104 * 18 16 14 20 20 H 1.48499 * 109.47020 * 214.99442 * 18 16 14 21 21 H 1.48496 * 109.47367 * 334.99926 * 18 16 14 22 22 C 1.53002 * 109.47117 * 274.70507 * 12 11 10 23 23 Cl 1.80301 * 109.46894 * 295.77968 * 22 12 11 24 24 H 1.08997 * 109.47774 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46545 * 300.00103 * 1 2 3 26 26 H 1.09005 * 109.46981 * 59.99439 * 1 2 3 27 27 H 1.08000 * 119.98107 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47372 * 90.00000 * 6 5 4 29 29 H 1.09004 * 109.47694 * 210.00309 * 6 5 4 30 30 H 1.09006 * 109.46896 * 330.00136 * 6 5 4 31 31 H 1.08005 * 119.93788 * 179.97438 * 7 5 4 32 32 H 0.97001 * 120.00044 * 179.97438 * 17 16 14 33 33 H 1.08997 * 109.47316 * 55.78256 * 22 12 11 34 34 H 1.09006 * 109.46421 * 175.78389 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2928 2.3751 0.0006 5 6 1.9208 3.6063 0.0011 6 6 1.0989 4.8694 0.0011 7 6 3.3014 3.6819 0.0005 8 6 4.0604 2.5245 0.0058 9 9 5.4092 2.6007 0.0110 10 6 3.4351 1.2858 -0.0001 11 8 4.1788 0.1465 -0.0001 12 6 4.6362 -0.3297 -1.2675 13 1 4.8595 0.5183 -1.9150 14 6 5.8816 -1.1558 -1.0740 15 1 6.2330 -1.3777 -0.0772 16 6 6.5693 -1.6331 -2.1696 17 7 6.0910 -1.4436 -3.3799 18 14 8.1802 -2.5491 -1.9347 19 1 7.9190 -4.0107 -1.9063 20 1 9.0982 -2.2322 -3.0581 21 1 8.8041 -2.1328 -0.6530 22 6 3.5479 -1.1907 -1.9118 23 17 3.2660 -2.6577 -0.9023 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2142 2.3194 0.0006 28 1 0.9003 5.1737 1.0288 29 1 1.6468 5.6596 -0.5124 30 1 0.1549 4.6886 -0.5131 31 1 3.7885 4.6459 0.0005 32 1 6.5749 -1.7791 -4.1507 33 1 2.6245 -0.6159 -1.9832 34 1 3.8664 -1.4920 -2.9098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234229120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:07 Heat of formation + Delta-G solvation = -128.017759 kcal Electronic energy + Delta-G solvation = -21369.888403 eV Core-core repulsion = 17822.192316 eV Total energy + Delta-G solvation = -3547.696087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.90152 -41.35337 -39.07852 -38.29587 -36.34779 -35.12974 -32.80637 -31.01841 -30.89565 -28.58005 -27.30574 -26.93053 -23.59669 -23.17524 -22.23282 -19.16874 -18.71916 -18.32141 -18.11771 -17.16857 -17.03423 -16.60570 -16.31810 -15.83546 -15.50456 -15.39078 -14.92039 -14.42075 -14.31980 -14.06104 -13.88320 -13.67641 -13.36907 -13.08216 -12.81143 -12.74915 -12.68388 -12.63929 -12.19226 -12.08362 -11.61694 -11.38644 -11.24537 -10.85627 -10.73995 -10.29307 -9.55012 -9.10700 -8.27228 -6.35523 0.01013 0.23147 1.40190 1.41268 1.52768 1.88543 2.24274 2.32511 2.44197 3.05627 3.12143 3.40959 3.77284 4.01174 4.08821 4.26322 4.35854 4.38811 4.45368 4.49704 4.64014 4.74783 4.81008 4.89436 4.90649 4.94028 5.07396 5.18430 5.28096 5.46013 5.63311 5.74473 5.98156 6.33663 6.63251 6.98133 7.34348 8.81758 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.006450 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.896036 B = 4339.899686 C = 5420.754753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.316 6.316 3 C 0.130 3.870 4 C -0.203 4.203 5 C -0.025 4.025 6 C -0.108 4.108 7 C -0.183 4.183 8 C 0.086 3.914 9 F -0.146 7.146 10 C -0.009 4.009 11 O -0.332 6.332 12 C 0.225 3.775 13 H 0.003 0.997 14 C -0.517 4.517 15 H 0.051 0.949 16 C 0.028 3.972 17 N -0.917 5.917 18 Si 0.964 3.036 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.272 1.272 22 C -0.008 4.008 23 Cl -0.197 7.197 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.172 0.828 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.270 0.730 33 H 0.065 0.935 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 10.860 4.124 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.229 6.229 3 C 0.083 3.917 4 C -0.221 4.221 5 C -0.025 4.025 6 C -0.164 4.164 7 C -0.201 4.201 8 C 0.066 3.934 9 F -0.124 7.124 10 C -0.055 4.055 11 O -0.249 6.249 12 C 0.170 3.830 13 H 0.021 0.979 14 C -0.555 4.555 15 H 0.069 0.931 16 C -0.172 4.172 17 N -0.556 5.556 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.197 1.197 22 C -0.071 4.071 23 Cl -0.171 7.171 24 H 0.126 0.874 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.190 0.810 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.177 0.823 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.010 10.400 4.151 17.936 hybrid contribution 1.225 -0.668 -0.245 1.416 sum -12.786 9.733 3.906 16.536 Atomic orbital electron populations 1.23422 0.76414 1.05352 1.02779 1.86325 1.23367 1.25551 1.87694 1.19251 0.90151 0.86551 0.95748 1.21429 1.01598 0.90008 1.09081 1.19952 0.92197 0.96501 0.93851 1.20895 0.99332 0.92012 1.04166 1.21125 0.94453 0.96641 1.07917 1.18284 0.77088 0.94393 1.03626 1.91460 1.30051 1.97081 1.93855 1.18594 0.89298 0.86828 1.10806 1.86217 1.68473 1.37922 1.32334 1.20063 0.91713 0.91624 0.79559 0.97897 1.20951 1.08506 1.32697 0.93324 0.93092 1.25510 1.00947 0.96385 0.94342 1.69908 1.40106 1.47070 0.98502 0.85439 0.78907 0.78773 0.78006 1.19787 1.19846 1.19715 1.24639 0.98840 0.87097 0.96562 1.98585 1.96844 1.46382 1.75305 0.87390 0.90612 0.91003 0.81046 0.88938 0.89986 0.89296 0.82291 0.92066 0.91625 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 9.81 113.37 1.11 1.41 16 2 O -0.32 -10.74 8.84 -79.50 -0.70 -11.45 16 3 C 0.13 4.49 6.33 22.56 0.14 4.63 16 4 C -0.20 -4.93 8.69 22.36 0.19 -4.74 16 5 C -0.02 -0.55 5.88 -19.86 -0.12 -0.67 16 6 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 7 C -0.18 -5.18 9.67 22.32 0.22 -4.96 16 8 C 0.09 3.39 7.31 22.43 0.16 3.56 16 9 F -0.15 -6.53 17.11 44.97 0.77 -5.76 16 10 C -0.01 -0.41 5.50 22.59 0.12 -0.28 16 11 O -0.33 -17.32 9.17 -80.31 -0.74 -18.06 16 12 C 0.22 12.28 2.42 29.85 0.07 12.36 16 13 H 0.00 0.21 7.96 -2.39 -0.02 0.19 16 14 C -0.52 -30.29 7.93 25.60 0.20 -30.09 16 15 H 0.05 3.11 7.82 -2.91 -0.02 3.09 16 16 C 0.03 1.56 5.36 84.66 0.45 2.01 16 17 N -0.92 -52.11 11.59 21.45 0.25 -51.87 16 18 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 22 C -0.01 -0.39 6.01 71.98 0.43 0.04 16 23 Cl -0.20 -9.42 28.14 -2.72 -0.08 -9.50 16 24 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 1.18 7.66 -2.39 -0.02 1.16 16 26 H 0.07 1.18 7.66 -2.38 -0.02 1.16 16 27 H 0.17 2.74 6.30 -2.91 -0.02 2.72 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 30 H 0.09 0.78 8.08 -2.38 -0.02 0.76 16 31 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.07 2.98 6.50 -2.39 -0.02 2.97 16 34 H 0.09 5.03 6.43 -2.38 -0.02 5.02 16 Total: -1.00 -70.41 309.78 6.36 -64.05 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.12 Total: 2.67 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 3.71 Total: -17.34 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.25 Total: -51.87 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.44 Total: -29.50 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.77 Total: -5.76 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 17 Polarization: -9.42 SS G_CDS: -0.08 Total: -9.50 kcal Total: -70.41 6.36 -64.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234229120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.973 kcal (2) G-P(sol) polarization free energy of solvation -70.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds