Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00554 * 2 1 4 4 H 1.48507 * 109.47012 * 265.23449 * 3 2 1 5 5 H 1.48495 * 109.47103 * 25.23158 * 3 2 1 6 6 H 1.48493 * 109.47279 * 145.23558 * 3 2 1 7 7 C 1.37879 * 119.99278 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00350 * 353.05690 * 7 2 1 9 9 C 1.50698 * 119.99662 * 173.05827 * 7 2 1 10 10 H 1.08996 * 109.47497 * 24.78522 * 9 7 2 11 11 O 1.42899 * 109.47165 * 144.78699 * 9 7 2 12 12 C 1.35725 * 117.00192 * 269.99895 * 11 9 7 13 13 C 1.41857 * 126.78678 * 179.97438 * 12 11 9 14 14 C 1.36667 * 103.81169 * 179.97438 * 13 12 11 15 15 C 1.47538 * 126.88071 * 180.02562 * 14 13 12 16 16 N 1.34772 * 120.00422 * 180.27952 * 15 14 13 17 17 O 1.21589 * 119.99792 * 359.97438 * 15 14 13 18 18 O 1.34657 * 106.23711 * 0.26479 * 14 13 12 19 19 N 1.20876 * 111.63661 * 359.52402 * 18 14 13 20 20 C 1.50705 * 109.47122 * 264.78787 * 9 7 2 21 21 C 1.38236 * 119.99789 * 276.01095 * 20 9 7 22 22 C 1.38235 * 119.99916 * 179.81010 * 21 20 9 23 23 C 1.38235 * 119.99759 * 0.39986 * 22 21 20 24 24 C 1.38235 * 120.00088 * 359.84867 * 23 22 21 25 25 C 1.38227 * 119.99986 * 359.96398 * 24 23 22 26 26 H 0.97006 * 119.99478 * 0.02562 * 1 2 3 27 27 H 1.08000 * 128.09302 * 0.02562 * 13 12 11 28 28 H 0.96991 * 120.00478 * 179.72111 * 16 15 14 29 29 H 0.97001 * 119.99396 * 359.72512 * 16 15 14 30 30 H 1.07999 * 120.00311 * 359.97438 * 21 20 9 31 31 H 1.07994 * 120.00295 * 180.22787 * 22 21 20 32 32 H 1.08000 * 120.00312 * 179.83885 * 23 22 21 33 33 H 1.08004 * 120.00160 * 179.97438 * 24 23 22 34 34 H 1.08005 * 120.00048 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5976 1.9881 -1.3953 5 1 1.4001 2.6796 0.5968 6 1 3.4928 1.4711 0.7983 7 6 2.0044 -1.1942 -0.0005 8 1 1.4703 -2.1261 0.1121 9 6 3.5031 -1.1990 -0.1583 10 1 3.9067 -0.2430 0.1754 11 8 4.0616 -2.2526 0.6291 12 6 4.4037 -1.9517 1.9076 13 6 4.9697 -2.8320 2.8651 14 6 5.1221 -2.0511 3.9763 15 6 5.6740 -2.4650 5.2805 16 7 5.7560 -1.5761 6.2902 17 8 6.0495 -3.6095 5.4461 18 8 4.6629 -0.8297 3.6440 19 7 4.2773 -0.7949 2.4989 20 6 3.8550 -1.4143 -1.6078 21 6 3.9095 -2.6960 -2.1227 22 6 4.2284 -2.8933 -3.4532 23 6 4.5009 -1.8093 -4.2667 24 6 4.4514 -0.5280 -3.7505 25 6 4.1287 -0.3305 -2.4210 26 1 -0.4850 0.8401 -0.0004 27 1 5.2220 -3.8752 2.7441 28 1 6.1151 -1.8492 7.1489 29 1 5.4560 -0.6632 6.1582 30 1 3.7003 -3.5431 -1.4863 31 1 4.2674 -3.8943 -3.8565 32 1 4.7526 -1.9636 -5.3056 33 1 4.6647 0.3189 -4.3859 34 1 4.0905 0.6706 -2.0175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234590151.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = 21.457262 kcal Electronic energy + Delta-G solvation = -22076.496249 eV Core-core repulsion = 18557.634697 eV Total energy + Delta-G solvation = -3518.861552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.56125 -39.43932 -39.02647 -37.62772 -34.03740 -33.47549 -32.54854 -31.41481 -30.94936 -30.31177 -27.45900 -24.44331 -23.43497 -22.82595 -22.05760 -21.10613 -19.81913 -18.76333 -17.66998 -17.33905 -17.16910 -16.58056 -16.14368 -15.64292 -14.98351 -14.72197 -14.53537 -14.15420 -14.04436 -13.65601 -13.34831 -13.13495 -12.94655 -12.74230 -12.28447 -11.98162 -11.33982 -11.02878 -10.98971 -10.52910 -10.41957 -10.28551 -10.02121 -9.87252 -9.75507 -9.54947 -8.86150 -8.55676 -8.35401 -7.98949 -6.38144 -4.42962 0.96038 1.94006 1.98190 2.65085 2.80825 3.00486 3.10747 3.20755 3.24520 3.30619 3.80874 4.17280 4.37926 4.61511 4.96479 5.07929 5.18102 5.41815 5.42437 5.47845 5.60659 5.80110 5.92857 6.07603 6.17589 6.32472 6.45023 6.54700 6.62266 6.97341 7.00331 7.04873 7.16151 7.25677 7.57798 7.78950 7.88709 8.19829 8.57357 8.70303 9.20306 10.72837 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.005439 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.823468 B = 5147.171613 C = 6197.162776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.091 3.909 3 Si 0.855 3.145 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.246 1.246 7 C -0.529 4.529 8 H 0.086 0.914 9 C 0.209 3.791 10 H 0.058 0.942 11 O -0.284 6.284 12 C 0.234 3.766 13 C -0.150 4.150 14 C -0.098 4.098 15 C 0.620 3.380 16 N -0.840 5.840 17 O -0.521 6.521 18 O 0.112 5.888 19 N -0.375 5.375 20 C -0.041 4.041 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.120 4.120 25 C -0.127 4.127 26 H 0.271 0.729 27 H 0.184 0.816 28 H 0.410 0.590 29 H 0.410 0.590 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.311 -0.477 4.592 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.115 4.115 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.566 4.566 8 H 0.104 0.896 9 C 0.155 3.845 10 H 0.076 0.924 11 O -0.190 6.190 12 C 0.037 3.963 13 C -0.174 4.174 14 C -0.165 4.165 15 C 0.403 3.597 16 N -0.404 5.404 17 O -0.396 6.396 18 O 0.045 5.955 19 N -0.100 5.100 20 C -0.042 4.042 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.160 4.160 24 C -0.138 4.138 25 C -0.145 4.145 26 H 0.081 0.919 27 H 0.201 0.799 28 H 0.242 0.758 29 H 0.240 0.760 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.863 -0.233 3.927 11.554 hybrid contribution 0.153 0.693 0.134 0.722 sum 11.016 0.460 4.061 11.750 Atomic orbital electron populations 1.69874 1.06283 1.27764 1.46918 1.24917 0.94789 0.98912 0.92923 0.87173 0.81589 0.83753 0.79427 1.19212 1.20636 1.16994 1.21082 0.88035 0.95825 1.51627 0.89596 1.19637 0.94810 0.86209 0.83835 0.92394 1.86169 1.76452 1.40682 1.15702 1.21819 0.96482 0.88728 0.89256 1.22183 1.03414 1.01969 0.89797 1.23672 1.07516 0.87883 0.97386 1.16458 0.77187 0.84779 0.81276 1.43629 1.66937 1.14927 1.14914 1.90901 1.48735 1.18422 1.81581 1.84970 1.59176 1.29079 1.22313 1.74137 1.21474 1.21872 0.92469 1.20121 0.94259 0.93420 0.96390 1.20919 0.99155 0.96983 0.94904 1.21059 1.00638 0.98340 0.94055 1.20931 1.03033 0.92893 0.99176 1.20929 1.00995 0.96858 0.95009 1.20909 1.01007 0.98327 0.94248 0.91898 0.79862 0.75816 0.76018 0.85962 0.86717 0.86911 0.86745 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.96 55.43 0.77 -25.07 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.85 20.61 25.60 -169.99 -4.35 16.26 16 4 H -0.27 -6.12 6.42 56.52 0.36 -5.76 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.25 -5.77 6.35 56.52 0.36 -5.41 16 7 C -0.53 -14.70 9.17 -34.44 -0.32 -15.01 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 C 0.21 5.04 1.97 -29.03 -0.06 4.98 16 10 H 0.06 1.42 4.06 -51.93 -0.21 1.21 16 11 O -0.28 -6.43 9.02 -18.88 -0.17 -6.60 16 12 C 0.23 4.83 7.94 -16.72 -0.13 4.69 16 13 C -0.15 -2.52 10.97 -38.77 -0.43 -2.94 16 14 C -0.10 -1.48 7.29 -36.36 -0.26 -1.74 16 15 C 0.62 7.90 8.09 -12.47 -0.10 7.79 16 16 N -0.84 -6.69 8.87 30.46 0.27 -6.42 16 17 O -0.52 -8.12 17.75 5.29 0.09 -8.03 16 18 O 0.11 1.86 11.03 15.51 0.17 2.03 16 19 N -0.37 -7.76 11.05 30.47 0.34 -7.43 16 20 C -0.04 -0.91 4.98 -104.62 -0.52 -1.43 16 21 C -0.10 -2.03 9.35 -39.58 -0.37 -2.40 16 22 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 23 C -0.14 -2.29 10.05 -39.58 -0.40 -2.69 16 24 C -0.12 -2.08 10.05 -39.59 -0.40 -2.48 16 25 C -0.13 -2.60 9.35 -39.59 -0.37 -2.97 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 28 H 0.41 2.33 8.93 -40.82 -0.36 1.96 16 29 H 0.41 2.52 8.65 -40.82 -0.35 2.17 16 30 H 0.12 2.39 7.66 -52.49 -0.40 1.99 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.11 2.30 5.75 -52.48 -0.30 2.00 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -32.94 305.51 -5.08 -38.02 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.96 Total: 6.84 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -3.85 Total: -14.22 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 1.38 Total: -38.93 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.35 Total: 16.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.94 -5.08 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234590151.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.479 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds