Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00554 * 2 1 4 4 H 1.48507 * 109.47012 * 265.23449 * 3 2 1 5 5 H 1.48495 * 109.47103 * 25.23158 * 3 2 1 6 6 H 1.48493 * 109.47279 * 145.23558 * 3 2 1 7 7 C 1.37879 * 119.99278 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00350 * 353.05690 * 7 2 1 9 9 C 1.50698 * 119.99662 * 173.05827 * 7 2 1 10 10 H 1.08996 * 109.47497 * 24.78522 * 9 7 2 11 11 O 1.42899 * 109.47165 * 144.78699 * 9 7 2 12 12 C 1.35725 * 117.00192 * 269.99895 * 11 9 7 13 13 C 1.41857 * 126.78678 * 179.97438 * 12 11 9 14 14 C 1.36667 * 103.81169 * 179.97438 * 13 12 11 15 15 C 1.47538 * 126.88071 * 180.02562 * 14 13 12 16 16 N 1.34772 * 120.00422 * 180.27952 * 15 14 13 17 17 O 1.21589 * 119.99792 * 359.97438 * 15 14 13 18 18 O 1.34657 * 106.23711 * 0.26479 * 14 13 12 19 19 N 1.20876 * 111.63661 * 359.52402 * 18 14 13 20 20 C 1.50705 * 109.47122 * 264.78787 * 9 7 2 21 21 C 1.38236 * 119.99789 * 276.01095 * 20 9 7 22 22 C 1.38235 * 119.99916 * 179.81010 * 21 20 9 23 23 C 1.38235 * 119.99759 * 0.39986 * 22 21 20 24 24 C 1.38235 * 120.00088 * 359.84867 * 23 22 21 25 25 C 1.38227 * 119.99986 * 359.96398 * 24 23 22 26 26 H 0.97006 * 119.99478 * 0.02562 * 1 2 3 27 27 H 1.08000 * 128.09302 * 0.02562 * 13 12 11 28 28 H 0.96991 * 120.00478 * 179.72111 * 16 15 14 29 29 H 0.97001 * 119.99396 * 359.72512 * 16 15 14 30 30 H 1.07999 * 120.00311 * 359.97438 * 21 20 9 31 31 H 1.07994 * 120.00295 * 180.22787 * 22 21 20 32 32 H 1.08000 * 120.00312 * 179.83885 * 23 22 21 33 33 H 1.08004 * 120.00160 * 179.97438 * 24 23 22 34 34 H 1.08005 * 120.00048 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5976 1.9881 -1.3953 5 1 1.4001 2.6796 0.5968 6 1 3.4928 1.4711 0.7983 7 6 2.0044 -1.1942 -0.0005 8 1 1.4703 -2.1261 0.1121 9 6 3.5031 -1.1990 -0.1583 10 1 3.9067 -0.2430 0.1754 11 8 4.0616 -2.2526 0.6291 12 6 4.4037 -1.9517 1.9076 13 6 4.9697 -2.8320 2.8651 14 6 5.1221 -2.0511 3.9763 15 6 5.6740 -2.4650 5.2805 16 7 5.7560 -1.5761 6.2902 17 8 6.0495 -3.6095 5.4461 18 8 4.6629 -0.8297 3.6440 19 7 4.2773 -0.7949 2.4989 20 6 3.8550 -1.4143 -1.6078 21 6 3.9095 -2.6960 -2.1227 22 6 4.2284 -2.8933 -3.4532 23 6 4.5009 -1.8093 -4.2667 24 6 4.4514 -0.5280 -3.7505 25 6 4.1287 -0.3305 -2.4210 26 1 -0.4850 0.8401 -0.0004 27 1 5.2220 -3.8752 2.7441 28 1 6.1151 -1.8492 7.1489 29 1 5.4560 -0.6632 6.1582 30 1 3.7003 -3.5431 -1.4863 31 1 4.2674 -3.8943 -3.8565 32 1 4.7526 -1.9636 -5.3056 33 1 4.6647 0.3189 -4.3859 34 1 4.0905 0.6706 -2.0175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234590151.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = -5.081180 kcal Electronic energy + Delta-G solvation = -22077.647043 eV Core-core repulsion = 18557.634697 eV Total energy + Delta-G solvation = -3520.012346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.05487 -40.63933 -40.48417 -39.18863 -35.37247 -34.94428 -34.21847 -32.91108 -32.50120 -31.73565 -29.27838 -25.86610 -25.03938 -24.37414 -23.49222 -22.50643 -21.28343 -19.99971 -19.51606 -18.89137 -18.33274 -18.04551 -17.66369 -16.92201 -16.68200 -16.13175 -15.83496 -15.60565 -15.33760 -15.26722 -14.97510 -14.73711 -14.59457 -14.27108 -13.94296 -13.54735 -13.08327 -12.73978 -12.47959 -12.12080 -11.96672 -11.76535 -11.68014 -11.53657 -11.03304 -10.94589 -10.78546 -10.15978 -9.78372 -9.54364 -8.52968 -6.62489 -0.29017 0.48871 0.54572 1.12572 1.17395 1.24514 1.33943 1.60920 1.82687 1.87547 2.15454 2.66288 2.78180 3.01524 3.19304 3.69845 3.94868 3.97875 4.07546 4.16595 4.22712 4.29825 4.46579 4.62250 4.74088 4.77444 5.05538 5.18262 5.20924 5.59369 5.62959 5.68991 5.74046 5.85423 6.13131 6.15843 6.26673 6.46652 7.03570 7.05302 7.17813 8.62631 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.005439 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.823468 B = 5147.171613 C = 6197.162776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.042 3.958 3 Si 0.911 3.089 4 H -0.245 1.245 5 H -0.276 1.276 6 H -0.240 1.240 7 C -0.535 4.535 8 H 0.037 0.963 9 C 0.221 3.779 10 H 0.052 0.948 11 O -0.294 6.294 12 C 0.200 3.800 13 C -0.157 4.157 14 C -0.078 4.078 15 C 0.626 3.374 16 N -0.808 5.808 17 O -0.548 6.548 18 O 0.132 5.868 19 N -0.406 5.406 20 C -0.077 4.077 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.118 4.118 25 C -0.148 4.148 26 H 0.274 0.726 27 H 0.203 0.797 28 H 0.427 0.573 29 H 0.423 0.577 30 H 0.111 0.889 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.623 0.234 3.896 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.160 4.160 3 Si 0.733 3.267 4 H -0.170 1.170 5 H -0.202 1.202 6 H -0.164 1.164 7 C -0.572 4.572 8 H 0.055 0.945 9 C 0.166 3.834 10 H 0.070 0.930 11 O -0.201 6.201 12 C 0.004 3.996 13 C -0.180 4.180 14 C -0.145 4.145 15 C 0.407 3.593 16 N -0.374 5.374 17 O -0.426 6.426 18 O 0.062 5.938 19 N -0.128 5.128 20 C -0.077 4.077 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.166 4.166 26 H 0.083 0.917 27 H 0.220 0.780 28 H 0.262 0.738 29 H 0.255 0.745 30 H 0.129 0.871 31 H 0.167 0.833 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.189 0.505 3.249 13.593 hybrid contribution -0.489 0.362 0.426 0.743 sum 12.700 0.867 3.674 13.249 Atomic orbital electron populations 1.70001 1.07967 1.28797 1.49278 1.25676 0.95452 1.02389 0.92489 0.86293 0.80381 0.79301 0.80684 1.16957 1.20151 1.16402 1.21148 0.90311 0.93997 1.51727 0.94495 1.19366 0.92190 0.86291 0.85562 0.93038 1.86101 1.76829 1.40288 1.16898 1.22261 0.98205 0.90022 0.89112 1.22410 1.03551 1.02742 0.89261 1.24131 1.05627 0.86595 0.98123 1.16186 0.77234 0.84853 0.81019 1.43422 1.64882 1.14734 1.14323 1.90907 1.50277 1.19702 1.81712 1.84914 1.58377 1.29674 1.20794 1.74083 1.22322 1.22558 0.93844 1.20101 0.97280 0.95114 0.95244 1.21005 1.00355 0.95959 0.96641 1.21459 0.98887 1.00667 0.92587 1.21473 1.00342 0.91801 1.01020 1.21367 0.99393 0.98898 0.93884 1.21060 1.02244 0.97518 0.95799 0.91668 0.77994 0.73835 0.74522 0.87083 0.83299 0.82401 0.83257 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.14 13.96 21.45 0.30 -56.84 16 2 C 0.04 2.43 5.47 84.65 0.46 2.89 16 3 Si 0.91 43.43 25.60 68.60 1.76 45.19 16 4 H -0.25 -10.76 6.42 99.48 0.64 -10.12 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -11.10 6.35 99.48 0.63 -10.47 16 7 C -0.53 -31.49 9.17 25.60 0.23 -31.25 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.22 11.07 1.97 29.10 0.06 11.13 16 10 H 0.05 2.61 4.06 -2.39 -0.01 2.60 16 11 O -0.29 -14.02 9.02 -90.47 -0.82 -14.84 16 12 C 0.20 8.50 7.94 85.78 0.68 9.19 16 13 C -0.16 -5.27 10.97 22.80 0.25 -5.02 16 14 C -0.08 -2.26 7.29 24.36 0.18 -2.09 16 15 C 0.63 14.67 8.09 86.70 0.70 15.37 16 16 N -0.81 -10.52 8.87 -175.82 -1.56 -12.08 16 17 O -0.55 -16.17 17.75 -3.99 -0.07 -16.24 16 18 O 0.13 4.32 11.03 65.69 0.72 5.05 16 19 N -0.41 -17.10 11.05 -172.03 -1.90 -19.00 16 20 C -0.08 -3.46 4.98 -19.86 -0.10 -3.56 16 21 C -0.12 -4.89 9.35 22.27 0.21 -4.68 16 22 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 23 C -0.13 -3.61 10.05 22.27 0.22 -3.38 16 24 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 25 C -0.15 -5.95 9.35 22.27 0.21 -5.74 16 26 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 27 H 0.20 5.82 8.06 -2.91 -0.02 5.80 16 28 H 0.43 3.44 8.93 -92.71 -0.83 2.61 16 29 H 0.42 3.86 8.65 -92.71 -0.80 3.06 16 30 H 0.11 4.57 7.66 -2.91 -0.02 4.54 16 31 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.11 4.29 5.75 -2.91 -0.02 4.27 16 Total: -1.00 -76.52 305.51 1.40 -75.13 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.59 Total: 17.77 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 3.55 Total: -24.12 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -3.16 Total: -87.93 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.16 Total: -26.03 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.76 Total: 45.19 kcal Total: -76.52 1.40 -75.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234590151.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.045 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds