Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35990 * 116.99956 * 2 1 4 4 C 1.38629 * 120.06064 * 270.01510 * 3 2 1 5 5 C 1.50706 * 119.97872 * 359.96400 * 4 3 2 6 6 C 1.38217 * 120.03923 * 179.97438 * 4 3 2 7 7 C 1.38260 * 120.16057 * 359.97438 * 6 4 3 8 8 C 1.38419 * 120.11903 * 359.78309 * 7 6 4 9 9 F 1.35095 * 120.01864 * 180.23078 * 8 7 6 10 10 C 1.38758 * 119.96001 * 0.46673 * 8 7 6 11 11 O 1.36049 * 120.07609 * 179.78964 * 10 8 7 12 12 C 1.42899 * 117.00056 * 277.52465 * 11 10 8 13 13 H 1.09003 * 109.47190 * 333.57193 * 12 11 10 14 14 C 1.50702 * 109.46950 * 93.56611 * 12 11 10 15 15 H 1.08003 * 120.00109 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00386 * 180.02562 * 14 12 11 17 17 N 1.31520 * 119.99747 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00316 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46768 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47591 * 119.99688 * 18 16 14 21 21 H 1.48501 * 109.47190 * 239.99928 * 18 16 14 22 22 C 1.52998 * 109.47531 * 213.56425 * 12 11 10 23 23 Cl 1.80305 * 109.47037 * 69.66055 * 22 12 11 24 24 H 1.08996 * 109.47234 * 300.00212 * 1 2 3 25 25 H 1.09000 * 109.46860 * 60.00132 * 1 2 3 26 26 H 1.08996 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47144 * 89.99481 * 5 4 3 28 28 H 1.08998 * 109.46814 * 209.99469 * 5 4 3 29 29 H 1.08997 * 109.46771 * 329.99748 * 5 4 3 30 30 H 1.07999 * 119.91506 * 179.97438 * 6 4 3 31 31 H 1.07996 * 119.94361 * 180.02562 * 7 6 4 32 32 H 0.96998 * 119.99937 * 180.02562 * 17 16 14 33 33 H 1.09000 * 109.47265 * 189.66144 * 22 12 11 34 34 H 1.09003 * 109.47109 * 309.66731 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3614 1.8306 -1.1998 5 6 2.0201 1.1597 -2.5055 6 6 2.9884 3.0623 -1.1993 7 6 3.3029 3.6812 -0.0036 8 6 2.9869 3.0715 1.1982 9 9 3.2909 3.6802 2.3653 10 6 2.3621 1.8326 1.2035 11 8 2.0543 1.2293 2.3835 12 6 3.0996 0.5024 3.0325 13 1 3.8189 0.1587 2.2891 14 6 3.7931 1.3990 4.0256 15 1 3.4684 2.4217 4.1485 16 6 4.8428 0.9141 4.7766 17 7 5.2385 -0.3312 4.6266 18 14 5.7020 2.0252 6.0081 19 1 5.0709 3.3694 5.9862 20 1 5.5809 1.4431 7.3688 21 1 7.1374 2.1469 5.6477 22 6 2.5050 -0.7035 3.7626 23 17 1.9267 -1.9117 2.5556 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.0220 1.4640 -2.8203 28 1 2.7455 1.4523 -3.2647 29 1 2.0462 0.0778 -2.3757 30 1 3.2332 3.5425 -2.1352 31 1 3.7924 4.6438 -0.0073 32 1 5.9767 -0.6725 5.1552 33 1 3.2679 -1.1579 4.3947 34 1 1.6680 -0.3778 4.3803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234938546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = -111.310745 kcal Electronic energy + Delta-G solvation = -21643.030244 eV Core-core repulsion = 18096.058628 eV Total energy + Delta-G solvation = -3546.971616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.15381 -39.84374 -37.27055 -36.65098 -34.65488 -33.29754 -31.75134 -29.99768 -28.60374 -26.89021 -25.84534 -25.18276 -22.34422 -21.57631 -20.61604 -17.77626 -17.21098 -16.76722 -16.33174 -15.56527 -15.27300 -14.80538 -14.60283 -14.27302 -14.03095 -13.60462 -13.36983 -13.26211 -12.96169 -12.63739 -12.22307 -11.94019 -11.84866 -11.64756 -11.51349 -11.16788 -11.04384 -10.96092 -10.69555 -10.37076 -10.02000 -9.66908 -9.34713 -9.22392 -8.59802 -8.50369 -8.21509 -7.94296 -6.26765 -4.35550 1.34459 1.45078 3.18936 3.28044 3.34691 3.53696 3.60566 4.08632 4.27632 4.61483 4.87781 4.98766 5.08290 5.21535 5.38015 5.51609 5.55389 5.66953 5.70293 5.79092 5.95038 5.98298 6.26972 6.36564 6.38536 6.45196 6.54377 6.65952 6.88046 7.08295 7.26233 7.73202 7.81340 7.94161 8.39132 8.85860 9.33430 10.78047 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.007769 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.137415 B = 3603.393165 C = 4941.362037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.310 6.310 3 C 0.099 3.901 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.102 4.102 7 C -0.154 4.154 8 C 0.090 3.910 9 F -0.118 7.118 10 C 0.085 3.915 11 O -0.332 6.332 12 C 0.224 3.776 13 H 0.035 0.965 14 C -0.538 4.538 15 H 0.081 0.919 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.008 4.008 23 Cl -0.236 7.236 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.268 0.732 33 H 0.134 0.866 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 3.516 -10.567 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.226 6.226 3 C 0.054 3.946 4 C -0.115 4.115 5 C -0.162 4.162 6 C -0.120 4.120 7 C -0.173 4.173 8 C 0.070 3.930 9 F -0.096 7.096 10 C 0.039 3.961 11 O -0.249 6.249 12 C 0.171 3.829 13 H 0.053 0.947 14 C -0.576 4.576 15 H 0.099 0.901 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.071 4.071 23 Cl -0.210 7.210 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.210 3.120 -10.416 12.522 hybrid contribution 0.685 0.736 0.945 1.380 sum -5.525 3.856 -9.471 11.623 Atomic orbital electron populations 1.22862 0.79350 1.02696 1.00013 1.86069 1.19276 1.23291 1.93980 1.18660 0.99072 0.86463 0.90406 1.20079 1.01536 0.95079 0.94841 1.20625 1.01156 1.01272 0.93126 1.20600 0.99610 0.94413 0.97375 1.21043 1.03670 1.01643 0.90936 1.18087 0.99833 0.92919 0.82128 1.91537 1.90624 1.81865 1.45612 1.19097 0.98722 0.90780 0.87551 1.85920 1.39756 1.68231 1.31032 1.20337 0.83329 0.87593 0.91674 0.94710 1.21809 1.15034 0.98960 1.21807 0.90111 1.24999 0.96392 0.95439 0.97106 1.69829 1.27872 1.14311 1.40813 0.86313 0.79279 0.80859 0.80415 1.19306 1.20674 1.20708 1.25166 1.00901 0.89119 0.91908 1.98632 1.91592 1.65029 1.65754 0.93278 0.94532 0.89335 0.91697 0.91597 0.90797 0.85122 0.84808 0.92178 0.84818 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 11.13 101.05 1.13 1.78 16 2 O -0.31 -5.63 9.04 -34.25 -0.31 -5.94 16 3 C 0.10 1.82 5.71 -39.13 -0.22 1.60 16 4 C -0.11 -1.73 5.89 -104.48 -0.62 -2.34 16 5 C -0.11 -1.22 9.79 36.01 0.35 -0.87 16 6 C -0.10 -1.40 9.69 -39.58 -0.38 -1.78 16 7 C -0.15 -2.42 10.02 -39.51 -0.40 -2.81 16 8 C 0.09 1.81 7.26 -39.32 -0.29 1.53 16 9 F -0.12 -2.62 14.67 2.25 0.03 -2.58 16 10 C 0.09 1.81 5.58 -39.09 -0.22 1.59 16 11 O -0.33 -7.92 9.27 -34.44 -0.32 -8.24 16 12 C 0.22 5.72 2.22 -27.88 -0.06 5.66 16 13 H 0.04 0.99 7.87 -51.93 -0.41 0.58 16 14 C -0.54 -14.56 8.12 -34.44 -0.28 -14.84 16 15 H 0.08 2.23 6.13 -52.48 -0.32 1.91 16 16 C 0.06 1.69 5.27 -17.82 -0.09 1.59 16 17 N -0.89 -24.29 11.30 55.43 0.63 -23.67 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.01 -0.20 6.20 37.16 0.23 0.03 16 23 Cl -0.24 -5.09 28.89 -51.86 -1.50 -6.59 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.13 3.42 5.87 -51.93 -0.30 3.12 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -28.95 311.53 -6.58 -35.53 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.94 Total: -0.25 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.85 Total: -8.87 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.63 Total: -23.67 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.63 Total: -14.18 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.03 Total: -2.58 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -5.09 SS G_CDS: -1.50 Total: -6.59 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.95 -6.58 -35.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234938546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.779 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds