Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35990 * 116.99956 * 2 1 4 4 C 1.38629 * 120.06064 * 270.01510 * 3 2 1 5 5 C 1.50706 * 119.97872 * 359.96400 * 4 3 2 6 6 C 1.38217 * 120.03923 * 179.97438 * 4 3 2 7 7 C 1.38260 * 120.16057 * 359.97438 * 6 4 3 8 8 C 1.38419 * 120.11903 * 359.78309 * 7 6 4 9 9 F 1.35095 * 120.01864 * 180.23078 * 8 7 6 10 10 C 1.38758 * 119.96001 * 0.46673 * 8 7 6 11 11 O 1.36049 * 120.07609 * 179.78964 * 10 8 7 12 12 C 1.42899 * 117.00056 * 277.52465 * 11 10 8 13 13 H 1.09003 * 109.47190 * 333.57193 * 12 11 10 14 14 C 1.50702 * 109.46950 * 93.56611 * 12 11 10 15 15 H 1.08003 * 120.00109 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00386 * 180.02562 * 14 12 11 17 17 N 1.31520 * 119.99747 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00316 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46768 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47591 * 119.99688 * 18 16 14 21 21 H 1.48501 * 109.47190 * 239.99928 * 18 16 14 22 22 C 1.52998 * 109.47531 * 213.56425 * 12 11 10 23 23 Cl 1.80305 * 109.47037 * 69.66055 * 22 12 11 24 24 H 1.08996 * 109.47234 * 300.00212 * 1 2 3 25 25 H 1.09000 * 109.46860 * 60.00132 * 1 2 3 26 26 H 1.08996 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47144 * 89.99481 * 5 4 3 28 28 H 1.08998 * 109.46814 * 209.99469 * 5 4 3 29 29 H 1.08997 * 109.46771 * 329.99748 * 5 4 3 30 30 H 1.07999 * 119.91506 * 179.97438 * 6 4 3 31 31 H 1.07996 * 119.94361 * 180.02562 * 7 6 4 32 32 H 0.96998 * 119.99937 * 180.02562 * 17 16 14 33 33 H 1.09000 * 109.47265 * 189.66144 * 22 12 11 34 34 H 1.09003 * 109.47109 * 309.66731 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3614 1.8306 -1.1998 5 6 2.0201 1.1597 -2.5055 6 6 2.9884 3.0623 -1.1993 7 6 3.3029 3.6812 -0.0036 8 6 2.9869 3.0715 1.1982 9 9 3.2909 3.6802 2.3653 10 6 2.3621 1.8326 1.2035 11 8 2.0543 1.2293 2.3835 12 6 3.0996 0.5024 3.0325 13 1 3.8189 0.1587 2.2891 14 6 3.7931 1.3990 4.0256 15 1 3.4684 2.4217 4.1485 16 6 4.8428 0.9141 4.7766 17 7 5.2385 -0.3312 4.6266 18 14 5.7020 2.0252 6.0081 19 1 5.0709 3.3694 5.9862 20 1 5.5809 1.4431 7.3688 21 1 7.1374 2.1469 5.6477 22 6 2.5050 -0.7035 3.7626 23 17 1.9267 -1.9117 2.5556 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.0220 1.4640 -2.8203 28 1 2.7455 1.4523 -3.2647 29 1 2.0462 0.0778 -2.3757 30 1 3.2332 3.5425 -2.1352 31 1 3.7924 4.6438 -0.0073 32 1 5.9767 -0.6725 5.1552 33 1 3.2679 -1.1579 4.3947 34 1 1.6680 -0.3778 4.3803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234938546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = -127.142992 kcal Electronic energy + Delta-G solvation = -21643.716782 eV Core-core repulsion = 18096.058628 eV Total energy + Delta-G solvation = -3547.658154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.72214 -41.20866 -38.92706 -37.95388 -36.49058 -35.27266 -32.98737 -31.66832 -30.18140 -28.10054 -27.22532 -26.99758 -23.83019 -23.09080 -22.20959 -19.19554 -19.00671 -18.35752 -17.96082 -17.08744 -16.76906 -16.46391 -16.06305 -15.64231 -15.43264 -15.36114 -15.04212 -14.46839 -14.27713 -14.17574 -13.85202 -13.60212 -13.19044 -13.06623 -12.90277 -12.81816 -12.61858 -12.46076 -12.27364 -12.11959 -11.67488 -11.45558 -11.12376 -10.85987 -10.61326 -10.32099 -9.54791 -9.33482 -8.30647 -6.47135 0.04506 0.09765 1.34356 1.37774 1.50986 1.69781 2.22596 2.35530 2.77738 2.96293 3.17686 3.48473 3.88707 4.01861 4.22392 4.29515 4.38653 4.46572 4.54466 4.55229 4.68139 4.80150 4.84709 4.88744 4.97985 5.14094 5.19972 5.28220 5.31700 5.45074 5.64887 5.76293 5.92283 6.35867 6.62408 6.92635 7.26427 8.73687 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.007769 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.137415 B = 3603.393165 C = 4941.362037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.330 6.330 3 C 0.086 3.914 4 C -0.109 4.109 5 C -0.102 4.102 6 C -0.081 4.081 7 C -0.146 4.146 8 C 0.053 3.947 9 F -0.142 7.142 10 C 0.035 3.965 11 O -0.345 6.345 12 C 0.238 3.762 13 H -0.004 1.004 14 C -0.556 4.556 15 H 0.067 0.933 16 C 0.024 3.976 17 N -0.912 5.912 18 Si 0.964 3.036 19 H -0.272 1.272 20 H -0.269 1.269 21 H -0.276 1.276 22 C -0.002 4.002 23 Cl -0.214 7.214 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.183 0.817 31 H 0.163 0.837 32 H 0.272 0.728 33 H 0.117 0.883 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 4.437 -12.883 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.247 6.247 3 C 0.042 3.958 4 C -0.110 4.110 5 C -0.159 4.159 6 C -0.099 4.099 7 C -0.165 4.165 8 C 0.034 3.966 9 F -0.121 7.121 10 C -0.010 4.010 11 O -0.262 6.262 12 C 0.184 3.816 13 H 0.014 0.986 14 C -0.594 4.594 15 H 0.086 0.914 16 C -0.177 4.177 17 N -0.550 5.550 18 Si 0.788 3.212 19 H -0.197 1.197 20 H -0.194 1.194 21 H -0.201 1.201 22 C -0.065 4.065 23 Cl -0.188 7.188 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.200 0.800 31 H 0.181 0.819 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.211 4.036 -12.748 14.744 hybrid contribution 0.624 0.434 1.469 1.654 sum -5.587 4.470 -11.279 13.357 Atomic orbital electron populations 1.23014 0.77732 1.03786 1.00558 1.86015 1.20993 1.23587 1.94099 1.18907 0.99456 0.86723 0.90730 1.20567 1.00031 0.95358 0.95039 1.20720 1.03306 1.00250 0.91577 1.21200 0.96762 0.93418 0.98484 1.21437 1.02632 1.02544 0.89863 1.18579 1.01776 0.93396 0.82883 1.91459 1.91142 1.82199 1.47264 1.19590 1.01991 0.91975 0.87482 1.85870 1.39166 1.68431 1.32778 1.19941 0.83220 0.88012 0.90446 0.98634 1.21944 1.16031 0.98749 1.22630 0.91439 1.25712 0.96764 0.96693 0.98501 1.69919 1.28192 1.15424 1.41466 0.85408 0.78179 0.78927 0.78661 1.19662 1.19439 1.20108 1.24835 1.00456 0.89184 0.92034 1.98621 1.91282 1.63975 1.64970 0.95088 0.91576 0.87992 0.89375 0.88750 0.91921 0.80000 0.81913 0.91817 0.86540 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 11.13 113.37 1.26 2.47 16 2 O -0.33 -11.93 9.04 -79.53 -0.72 -12.65 16 3 C 0.09 3.17 5.71 22.56 0.13 3.30 16 4 C -0.11 -2.98 5.89 -19.77 -0.12 -3.10 16 5 C -0.10 -1.93 9.79 71.24 0.70 -1.24 16 6 C -0.08 -1.90 9.69 22.27 0.22 -1.69 16 7 C -0.15 -4.29 10.02 22.32 0.22 -4.07 16 8 C 0.05 2.18 7.26 22.44 0.16 2.35 16 9 F -0.14 -6.58 14.67 44.97 0.66 -5.92 16 10 C 0.04 1.55 5.58 22.59 0.13 1.67 16 11 O -0.34 -17.30 9.27 -80.20 -0.74 -18.04 16 12 C 0.24 12.76 2.22 29.85 0.07 12.82 16 13 H 0.00 -0.25 7.87 -2.39 -0.02 -0.27 16 14 C -0.56 -31.35 8.12 25.60 0.21 -31.14 16 15 H 0.07 3.92 6.13 -2.91 -0.02 3.90 16 16 C 0.02 1.29 5.27 84.65 0.45 1.74 16 17 N -0.91 -50.91 11.30 21.45 0.24 -50.67 16 18 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 C 0.00 -0.11 6.20 71.98 0.45 0.33 16 23 Cl -0.21 -9.42 28.89 -2.72 -0.08 -9.49 16 24 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.06 1.37 7.53 -2.39 -0.02 1.35 16 30 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.12 6.19 5.87 -2.39 -0.01 6.18 16 34 H 0.07 3.52 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -66.33 311.53 6.37 -59.96 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.12 Total: 7.77 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 3.87 Total: -16.55 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.24 Total: -50.67 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.46 Total: -30.69 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.66 Total: -5.92 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -9.42 SS G_CDS: -0.08 Total: -9.49 kcal Total: -66.33 6.37 -59.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234938546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.186 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds