Wall clock time and date at job start Tue Mar 31 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36272 * 120.05939 * 2 1 4 4 C 1.39916 * 120.12469 * 179.97438 * 3 2 1 5 5 C 1.47995 * 119.88064 * 179.97438 * 4 3 2 6 6 C 1.39545 * 120.10827 * 179.97438 * 5 4 3 7 7 C 1.38428 * 119.82359 * 179.97438 * 6 5 4 8 8 O 1.35906 * 119.97502 * 179.97438 * 7 6 5 9 9 C 1.38874 * 120.04587 * 0.02562 * 7 6 5 10 10 C 1.38392 * 120.22642 * 359.97377 * 9 7 6 11 11 Cl 1.73593 * 119.91550 * 179.97438 * 10 9 7 12 12 C 1.38112 * 120.17297 * 359.74835 * 10 9 7 13 13 C 1.39954 * 120.23443 * 359.72927 * 4 3 2 14 14 C 1.36237 * 120.12217 * 0.54832 * 13 4 3 15 15 C 1.40907 * 120.06529 * 179.97438 * 2 1 3 16 16 C 1.41036 * 120.11781 * 0.04767 * 15 2 1 17 17 H 1.07993 * 119.99639 * 333.71804 * 16 15 2 18 18 C 1.40005 * 120.00015 * 153.72565 * 16 15 2 19 19 N 1.30795 * 120.00075 * 343.38304 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 163.38636 * 18 16 15 21 21 H 1.48494 * 109.47196 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47198 * 119.99496 * 20 18 16 23 23 H 1.48497 * 109.47012 * 239.99697 * 20 18 16 24 24 H 1.08997 * 109.47167 * 270.01981 * 1 2 3 25 25 H 1.08995 * 109.47330 * 30.02302 * 1 2 3 26 26 H 1.09008 * 109.46563 * 150.02485 * 1 2 3 27 27 H 1.08005 * 119.93882 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.08813 * 359.97438 * 6 5 4 29 29 H 0.96703 * 113.99238 * 90.00322 * 8 7 6 30 30 H 1.07998 * 119.88992 * 179.97438 * 9 7 6 31 31 H 1.07999 * 120.02437 * 180.27930 * 12 10 9 32 32 H 1.08005 * 119.93897 * 180.28512 * 13 4 3 33 33 H 1.08001 * 120.06002 * 179.72717 * 14 13 4 34 34 H 0.97006 * 120.00439 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5887 1.1810 0.0005 5 6 4.3246 2.4651 0.0000 6 6 5.7200 2.4722 0.0010 7 6 6.4023 3.6767 0.0000 8 8 7.7613 3.6872 0.0015 9 6 5.6991 4.8742 -0.0017 10 6 4.3152 4.8694 -0.0027 11 17 3.4442 6.3711 -0.0041 12 6 3.6251 3.6731 -0.0075 13 6 4.2948 -0.0273 0.0068 14 6 3.6224 -1.2122 0.0011 15 6 2.2129 -1.2195 0.0005 16 6 1.5116 -2.4431 0.0001 17 1 0.5153 -2.4946 0.4135 18 6 2.1072 -3.5911 -0.5362 19 7 3.1510 -3.4825 -1.3168 20 14 1.4111 -5.2779 -0.1368 21 1 0.2381 -5.1293 0.7615 22 1 0.9913 -5.9502 -1.3927 23 1 2.4508 -6.0952 0.5385 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6495 2.1148 0.0004 28 1 6.2662 1.5405 0.0027 29 1 8.1556 3.6889 -0.8815 30 1 6.2339 5.8124 -0.0021 31 1 2.5451 3.6722 -0.0129 32 1 5.3749 -0.0205 0.0118 33 1 4.1683 -2.1440 0.0015 34 1 3.5635 -4.2778 -1.6887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235906568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:32 Heat of formation + Delta-G solvation = -23.534247 kcal Electronic energy + Delta-G solvation = -19200.322672 eV Core-core repulsion = 16087.926555 eV Total energy + Delta-G solvation = -3112.396117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.55569 -38.00551 -36.85234 -35.89970 -33.97546 -32.22544 -30.72043 -29.67722 -28.69402 -26.34962 -25.02320 -22.52552 -22.42297 -20.58887 -19.45694 -17.92363 -17.48168 -16.37024 -15.69635 -15.35327 -15.19993 -14.36589 -14.19639 -13.63240 -13.60995 -13.05182 -12.88740 -12.67949 -12.25905 -12.10570 -11.71043 -11.53110 -11.47523 -11.27319 -11.25398 -11.03136 -10.82741 -10.72004 -10.48361 -10.35215 -9.72099 -9.52149 -9.42503 -8.69106 -8.37924 -7.58034 -7.20350 -6.99803 -4.54409 1.28645 1.43763 2.27857 2.62180 2.92977 2.94984 2.98554 3.02843 3.72782 3.90444 4.36386 4.54099 5.15823 5.39483 5.44161 5.47238 5.65757 5.83347 6.00219 6.15937 6.19841 6.28065 6.45071 6.55943 6.58013 6.62182 6.66093 6.82651 6.85114 7.01396 7.08388 7.24506 7.45085 7.70094 7.77408 7.84491 7.93055 8.05536 8.37872 8.61290 8.73311 9.88154 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.003888 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.879153 B = 7200.162268 C = 8232.068710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.201 4.201 3 C -0.055 4.055 4 C -0.210 4.210 5 C 0.056 3.944 6 C -0.168 4.168 7 C 0.125 3.875 8 O -0.499 6.499 9 C -0.184 4.184 10 C -0.003 4.003 11 Cl -0.084 7.084 12 C -0.149 4.149 13 C -0.073 4.073 14 C -0.169 4.169 15 C 0.125 3.875 16 C -0.437 4.437 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.774 5.774 20 Si 0.911 3.089 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.269 1.269 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.132 0.868 29 H 0.388 0.612 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 7.870 -0.052 8.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.202 4.202 3 C -0.073 4.073 4 C -0.211 4.211 5 C 0.055 3.945 6 C -0.187 4.187 7 C 0.081 3.919 8 O -0.309 6.309 9 C -0.203 4.203 10 C -0.029 4.029 11 Cl -0.055 7.055 12 C -0.167 4.167 13 C -0.092 4.092 14 C -0.188 4.188 15 C 0.122 3.878 16 C -0.465 4.465 17 H 0.105 0.895 18 C -0.148 4.148 19 N -0.397 5.397 20 Si 0.735 3.265 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.194 1.194 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.150 0.850 29 H 0.243 0.757 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.568 7.844 0.404 8.264 hybrid contribution -0.085 -0.596 -0.468 0.762 sum 2.483 7.249 -0.064 7.662 Atomic orbital electron populations 1.20424 0.93243 1.00788 0.99869 1.19452 0.94619 0.92941 1.13220 1.20276 0.92689 0.96254 0.98089 1.17919 0.92511 0.90037 1.20675 1.18752 0.91676 0.92691 0.91347 1.21558 0.94181 0.97638 1.05281 1.18102 0.82453 0.91604 0.99753 1.84809 1.16175 1.96504 1.33397 1.20953 0.92145 0.98341 1.08900 1.20507 0.91653 0.86467 1.04303 1.98337 1.76844 1.33281 1.97064 1.21102 1.00511 0.89898 1.05212 1.20508 0.97407 0.92359 0.98913 1.20972 0.94456 0.96618 1.06799 1.17634 0.91943 0.91751 0.86479 1.19808 1.02069 0.92450 1.32168 0.89521 1.26068 0.94137 1.01954 0.92642 1.69812 1.17433 1.32393 1.20101 0.86194 0.80239 0.80573 0.79504 1.18081 1.19689 1.19420 0.93832 0.94136 0.91971 0.88777 0.85024 0.75681 0.85457 0.85001 0.88910 0.86324 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.39 36.01 0.34 -1.34 16 2 C -0.20 -4.55 5.90 -104.32 -0.62 -5.17 16 3 C -0.05 -1.17 8.99 -39.66 -0.36 -1.53 16 4 C -0.21 -4.49 5.90 -104.63 -0.62 -5.11 16 5 C 0.06 1.05 5.88 -104.91 -0.62 0.44 16 6 C -0.17 -2.90 9.36 -39.02 -0.37 -3.26 16 7 C 0.13 1.94 6.70 -39.28 -0.26 1.68 16 8 O -0.50 -6.62 13.50 -19.44 -0.26 -6.88 16 9 C -0.18 -2.75 9.76 -39.29 -0.38 -3.13 16 10 C 0.00 -0.04 6.31 -39.57 -0.25 -0.29 16 11 Cl -0.08 -1.15 28.95 -51.86 -1.50 -2.65 16 12 C -0.15 -2.55 9.20 -39.12 -0.36 -2.91 16 13 C -0.07 -1.63 9.36 -39.66 -0.37 -2.00 16 14 C -0.17 -4.11 8.62 -39.28 -0.34 -4.45 16 15 C 0.12 3.08 5.56 -106.80 -0.59 2.48 16 16 C -0.44 -10.53 8.09 -37.86 -0.31 -10.84 16 17 H 0.09 1.99 6.88 -52.49 -0.36 1.63 16 18 C 0.07 1.66 5.15 -17.33 -0.09 1.58 16 19 N -0.77 -18.39 10.99 55.55 0.61 -17.78 16 20 Si 0.91 17.07 29.59 -169.99 -5.03 12.04 16 21 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.06 1.22 6.77 -51.92 -0.35 0.87 16 27 H 0.09 1.79 6.17 -52.48 -0.32 1.46 16 28 H 0.13 2.21 6.18 -52.49 -0.32 1.88 16 29 H 0.39 3.17 9.06 45.56 0.41 3.58 16 30 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.13 2.18 6.18 -52.49 -0.32 1.85 16 32 H 0.09 1.85 6.17 -52.48 -0.32 1.53 16 33 H 0.12 2.95 6.23 -52.49 -0.33 2.62 16 34 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -25.96 304.74 -9.10 -35.06 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -2.32 Total: 9.48 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: -5.19 Total: -33.86 kcal Atomic # 7 Polarization: -18.39 SS G_CDS: 0.61 Total: -17.78 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.26 Total: -6.88 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.96 -9.10 -35.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235906568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.526 kcal (2) G-P(sol) polarization free energy of solvation -25.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds