Wall clock time and date at job start Tue Mar 31 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36272 * 120.05939 * 2 1 4 4 C 1.39916 * 120.12469 * 179.97438 * 3 2 1 5 5 C 1.47995 * 119.88064 * 179.97438 * 4 3 2 6 6 C 1.39545 * 120.10827 * 179.97438 * 5 4 3 7 7 C 1.38428 * 119.82359 * 179.97438 * 6 5 4 8 8 O 1.35906 * 119.97502 * 179.97438 * 7 6 5 9 9 C 1.38874 * 120.04587 * 0.02562 * 7 6 5 10 10 C 1.38392 * 120.22642 * 359.97377 * 9 7 6 11 11 Cl 1.73593 * 119.91550 * 179.97438 * 10 9 7 12 12 C 1.38112 * 120.17297 * 359.74835 * 10 9 7 13 13 C 1.39954 * 120.23443 * 359.72927 * 4 3 2 14 14 C 1.36237 * 120.12217 * 0.54832 * 13 4 3 15 15 C 1.40907 * 120.06529 * 179.97438 * 2 1 3 16 16 C 1.41036 * 120.11781 * 0.04767 * 15 2 1 17 17 H 1.07993 * 119.99639 * 333.71804 * 16 15 2 18 18 C 1.40005 * 120.00015 * 153.72565 * 16 15 2 19 19 N 1.30795 * 120.00075 * 343.38304 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 163.38636 * 18 16 15 21 21 H 1.48494 * 109.47196 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47198 * 119.99496 * 20 18 16 23 23 H 1.48497 * 109.47012 * 239.99697 * 20 18 16 24 24 H 1.08997 * 109.47167 * 270.01981 * 1 2 3 25 25 H 1.08995 * 109.47330 * 30.02302 * 1 2 3 26 26 H 1.09008 * 109.46563 * 150.02485 * 1 2 3 27 27 H 1.08005 * 119.93882 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.08813 * 359.97438 * 6 5 4 29 29 H 0.96703 * 113.99238 * 90.00322 * 8 7 6 30 30 H 1.07998 * 119.88992 * 179.97438 * 9 7 6 31 31 H 1.07999 * 120.02437 * 180.27930 * 12 10 9 32 32 H 1.08005 * 119.93897 * 180.28512 * 13 4 3 33 33 H 1.08001 * 120.06002 * 179.72717 * 14 13 4 34 34 H 0.97006 * 120.00439 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5887 1.1810 0.0005 5 6 4.3246 2.4651 0.0000 6 6 5.7200 2.4722 0.0010 7 6 6.4023 3.6767 0.0000 8 8 7.7613 3.6872 0.0015 9 6 5.6991 4.8742 -0.0017 10 6 4.3152 4.8694 -0.0027 11 17 3.4442 6.3711 -0.0041 12 6 3.6251 3.6731 -0.0075 13 6 4.2948 -0.0273 0.0068 14 6 3.6224 -1.2122 0.0011 15 6 2.2129 -1.2195 0.0005 16 6 1.5116 -2.4431 0.0001 17 1 0.5153 -2.4946 0.4135 18 6 2.1072 -3.5911 -0.5362 19 7 3.1510 -3.4825 -1.3168 20 14 1.4111 -5.2779 -0.1368 21 1 0.2381 -5.1293 0.7615 22 1 0.9913 -5.9502 -1.3927 23 1 2.4508 -6.0952 0.5385 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6495 2.1148 0.0004 28 1 6.2662 1.5405 0.0027 29 1 8.1556 3.6889 -0.8815 30 1 6.2339 5.8124 -0.0021 31 1 2.5451 3.6722 -0.0129 32 1 5.3749 -0.0205 0.0118 33 1 4.1683 -2.1440 0.0015 34 1 3.5635 -4.2778 -1.6887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235906568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:31 Heat of formation + Delta-G solvation = -36.011875 kcal Electronic energy + Delta-G solvation = -19200.863742 eV Core-core repulsion = 16087.926555 eV Total energy + Delta-G solvation = -3112.937188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.88478 -39.57362 -38.03143 -37.15502 -35.60689 -33.79779 -32.31594 -31.01592 -30.21345 -27.96578 -26.64004 -24.03205 -23.76882 -22.13562 -21.03792 -19.30180 -19.05491 -17.71048 -17.19584 -16.76447 -16.49327 -15.87181 -15.52060 -15.20656 -15.15393 -14.46977 -14.42095 -14.11867 -13.76429 -13.51821 -13.16478 -13.04445 -12.96274 -12.80351 -12.75067 -12.54207 -12.24873 -12.01364 -11.87676 -11.64774 -11.33900 -11.18002 -11.09395 -10.15528 -9.63060 -9.29858 -8.86244 -8.66010 -6.31643 -0.09733 0.16127 1.05793 1.07710 1.18350 1.39343 1.52228 1.54271 2.17627 2.47658 2.88705 3.25343 3.72697 3.85724 4.06877 4.09603 4.31779 4.39306 4.44821 4.68659 4.72310 4.79690 4.97986 5.03854 5.09284 5.18681 5.18874 5.28865 5.36307 5.38469 5.57493 5.67899 5.74405 6.01936 6.12018 6.21495 6.32760 6.63452 6.81873 6.87188 6.99586 8.24233 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.003888 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.879153 B = 7200.162268 C = 8232.068710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.216 4.216 3 C -0.067 4.067 4 C -0.205 4.205 5 C 0.030 3.970 6 C -0.174 4.174 7 C 0.134 3.866 8 O -0.501 6.501 9 C -0.168 4.168 10 C -0.007 4.007 11 Cl -0.063 7.063 12 C -0.149 4.149 13 C -0.084 4.084 14 C -0.193 4.193 15 C 0.092 3.908 16 C -0.472 4.472 17 H 0.087 0.913 18 C 0.035 3.965 19 N -0.812 5.812 20 Si 0.981 3.019 21 H -0.255 1.255 22 H -0.266 1.266 23 H -0.266 1.266 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.413 0.587 30 H 0.153 0.847 31 H 0.136 0.864 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.958 10.061 0.095 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.217 4.217 3 C -0.085 4.085 4 C -0.206 4.206 5 C 0.030 3.970 6 C -0.192 4.192 7 C 0.089 3.911 8 O -0.315 6.315 9 C -0.187 4.187 10 C -0.034 4.034 11 Cl -0.034 7.034 12 C -0.167 4.167 13 C -0.102 4.102 14 C -0.212 4.212 15 C 0.090 3.910 16 C -0.500 4.500 17 H 0.105 0.895 18 C -0.182 4.182 19 N -0.437 5.437 20 Si 0.802 3.198 21 H -0.178 1.178 22 H -0.190 1.190 23 H -0.191 1.191 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.148 0.852 29 H 0.272 0.728 30 H 0.171 0.829 31 H 0.154 0.846 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.978 10.059 0.534 10.504 hybrid contribution -0.007 -0.885 -0.518 1.025 sum 2.971 9.174 0.016 9.643 Atomic orbital electron populations 1.20403 0.91235 1.01367 1.00771 1.19882 0.96404 0.92772 1.12659 1.20571 0.92991 0.96881 0.98030 1.18248 0.92948 0.90970 1.18408 1.18671 0.92368 0.92104 0.93880 1.21656 0.93778 0.98618 1.05181 1.18056 0.83415 0.91023 0.98643 1.84757 1.14776 1.96320 1.35631 1.21273 0.91957 0.99165 1.06334 1.20568 0.92153 0.86898 1.03742 1.98349 1.76497 1.31635 1.96917 1.21155 1.00826 0.89969 1.04785 1.20708 0.98300 0.92288 0.98921 1.20955 0.94846 0.96718 1.08712 1.17982 0.92363 0.93009 0.87693 1.19971 1.02552 0.93379 1.34093 0.89506 1.26842 0.94278 1.05155 0.91911 1.69864 1.18944 1.33541 1.21360 0.85162 0.79444 0.75938 0.79303 1.17810 1.19041 1.19065 0.92659 0.91951 0.92893 0.86354 0.85215 0.72773 0.82934 0.84607 0.87452 0.88051 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.13 9.39 71.24 0.67 -2.46 16 2 C -0.22 -9.95 5.90 -19.67 -0.12 -10.07 16 3 C -0.07 -2.85 8.99 22.22 0.20 -2.65 16 4 C -0.20 -8.76 5.90 -19.87 -0.12 -8.88 16 5 C 0.03 1.10 5.88 -20.05 -0.12 0.99 16 6 C -0.17 -5.71 9.36 22.63 0.21 -5.50 16 7 C 0.13 3.72 6.70 22.47 0.15 3.87 16 8 O -0.50 -11.52 13.50 -92.49 -1.25 -12.77 16 9 C -0.17 -4.38 9.76 22.46 0.22 -4.16 16 10 C -0.01 -0.19 6.31 22.28 0.14 -0.05 16 11 Cl -0.06 -1.52 28.95 -2.72 -0.08 -1.60 16 12 C -0.15 -4.79 9.20 22.57 0.21 -4.59 16 13 C -0.08 -3.84 9.36 22.22 0.21 -3.63 16 14 C -0.19 -9.86 8.62 22.47 0.19 -9.67 16 15 C 0.09 4.74 5.56 -21.28 -0.12 4.62 16 16 C -0.47 -23.78 8.09 23.38 0.19 -23.59 16 17 H 0.09 4.17 6.88 -2.91 -0.02 4.15 16 18 C 0.03 1.66 5.15 85.28 0.44 2.10 16 19 N -0.81 -40.47 10.99 21.84 0.24 -40.23 16 20 Si 0.98 35.97 29.59 68.60 2.03 38.00 16 21 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 22 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 23 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 26 H 0.05 2.11 6.77 -2.38 -0.02 2.09 16 27 H 0.12 4.34 6.17 -2.91 -0.02 4.32 16 28 H 0.13 4.24 6.18 -2.91 -0.02 4.22 16 29 H 0.41 5.17 9.06 -74.06 -0.67 4.50 16 30 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.14 4.19 6.18 -2.91 -0.02 4.18 16 32 H 0.11 4.41 6.17 -2.91 -0.02 4.40 16 33 H 0.10 5.41 6.23 -2.91 -0.02 5.39 16 34 H 0.29 13.03 8.30 -92.70 -0.77 12.26 16 Total: -1.00 -57.16 304.74 3.79 -53.37 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.49 Total: 26.90 kcal Atomic # 6 Polarization: -66.03 SS G_CDS: 2.36 Total: -63.67 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.24 Total: -40.23 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.25 Total: -12.77 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -57.16 3.79 -53.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235906568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.358 kcal (2) G-P(sol) polarization free energy of solvation -57.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds