Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35608 * 117.00164 * 2 1 4 4 C 1.39143 * 119.88103 * 0.21153 * 3 2 1 5 5 C 1.36414 * 120.43587 * 180.25675 * 4 3 2 6 6 C 1.40914 * 120.19083 * 359.78770 * 5 4 3 7 7 C 1.41233 * 120.12263 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00461 * 330.10396 * 7 6 5 9 9 C 1.39865 * 120.00438 * 150.10757 * 7 6 5 10 10 N 1.30893 * 120.00584 * 161.71297 * 9 7 6 11 11 Si 1.86796 * 119.99589 * 341.71749 * 9 7 6 12 12 H 1.48503 * 109.47215 * 95.41380 * 11 9 7 13 13 H 1.48505 * 109.47101 * 215.40875 * 11 9 7 14 14 H 1.48500 * 109.47266 * 335.41290 * 11 9 7 15 15 C 1.40616 * 119.75920 * 359.97438 * 6 5 4 16 16 C 1.38601 * 119.57030 * 0.02562 * 15 6 5 17 17 C 1.48331 * 120.09646 * 179.97438 * 16 15 6 18 18 C 1.39375 * 120.10936 * 310.00009 * 17 16 15 19 19 C 1.37986 * 119.88652 * 179.97438 * 18 17 16 20 20 C 1.38445 * 120.11453 * 0.27484 * 19 18 17 21 21 Cl 1.73596 * 119.89254 * 179.70492 * 20 19 18 22 22 C 1.38450 * 120.21884 * 359.44965 * 20 19 18 23 23 C 1.37993 * 120.10965 * 0.54927 * 22 20 19 24 24 H 1.08999 * 109.47153 * 60.00239 * 1 2 3 25 25 H 1.09000 * 109.47077 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47356 * 300.00337 * 1 2 3 27 27 H 1.07994 * 119.78743 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.91009 * 179.76208 * 5 4 3 29 29 H 0.96990 * 120.00474 * 180.02562 * 10 9 7 30 30 H 1.08004 * 120.21651 * 179.97438 * 15 6 5 31 31 H 1.07999 * 120.05871 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.94176 * 180.02562 * 19 18 17 33 33 H 1.07991 * 119.94319 * 180.25658 * 22 20 19 34 34 H 1.07990 * 120.05584 * 179.75043 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2845 2.3737 0.0045 5 6 1.8920 3.5950 -0.0008 6 6 3.2981 3.6871 -0.0062 7 6 3.9256 4.9523 -0.0111 8 1 3.4374 5.7955 -0.4771 9 6 5.1794 5.1136 0.5875 10 7 5.9188 6.1515 0.2886 11 14 5.7986 3.8476 1.8136 12 1 6.6628 2.8628 1.1145 13 1 6.5829 4.5287 2.8749 14 1 4.6426 3.1449 2.4260 15 6 4.0743 2.5145 -0.0057 16 6 3.4467 1.2788 -0.0004 17 6 4.2541 0.0345 -0.0004 18 6 5.2814 -0.1324 -0.9274 19 6 6.0299 -1.2916 -0.9230 20 6 5.7583 -2.2903 -0.0034 21 17 6.6987 -3.7495 -0.0079 22 6 4.7427 -2.1269 0.9232 23 6 3.9884 -0.9714 0.9270 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2064 2.3109 0.0075 28 1 1.2937 4.4942 -0.0011 29 1 6.7884 6.2631 0.7035 30 1 5.1526 2.5765 -0.0103 31 1 5.4917 0.6445 -1.6475 32 1 6.8264 -1.4217 -1.6407 33 1 4.5374 -2.9071 1.6411 34 1 3.1937 -0.8466 1.6475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236087615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -7.038889 kcal Electronic energy + Delta-G solvation = -19773.393055 eV Core-core repulsion = 16661.712230 eV Total energy + Delta-G solvation = -3111.680825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.57905 -38.43201 -36.67884 -36.24038 -33.48033 -32.01235 -30.85091 -29.95138 -28.36167 -27.00676 -24.60259 -22.91120 -22.48623 -21.07190 -20.05540 -17.63597 -17.36640 -16.64496 -15.51295 -15.38272 -15.11155 -14.89807 -14.67350 -13.86107 -13.35108 -13.30653 -13.22292 -13.13367 -12.79637 -12.56046 -12.03837 -11.67910 -11.44760 -11.36238 -11.27520 -11.10885 -10.82329 -10.65385 -10.33488 -10.23599 -10.00804 -9.65673 -9.14299 -8.79622 -8.63945 -7.72451 -7.21096 -6.97362 -4.46443 1.26521 1.57476 2.26664 2.42941 2.51286 3.08854 3.17266 3.28605 3.92381 3.94539 4.07804 4.38475 5.05122 5.07746 5.17689 5.29775 5.45892 5.53051 5.62405 5.65751 5.70636 5.83704 5.90508 6.12881 6.20151 6.41478 6.45013 6.51296 6.60223 6.76503 6.87082 7.06103 7.12436 7.24314 7.41162 7.66352 7.80502 8.19020 8.30497 8.56975 8.74563 10.05431 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.006169 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.677205 B = 4537.916908 C = 6094.291756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.323 6.323 3 C 0.013 3.987 4 C -0.158 4.158 5 C -0.166 4.166 6 C 0.071 3.929 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.086 3.914 10 N -0.809 5.809 11 Si 0.900 3.100 12 H -0.268 1.268 13 H -0.289 1.289 14 H -0.244 1.244 15 C -0.192 4.192 16 C -0.047 4.047 17 C -0.005 4.005 18 C -0.102 4.102 19 C -0.113 4.113 20 C -0.047 4.047 21 Cl -0.088 7.088 22 C -0.114 4.114 23 C -0.086 4.086 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.285 0.715 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 -12.968 0.649 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C -0.031 4.031 4 C -0.177 4.177 5 C -0.185 4.185 6 C 0.068 3.932 7 C -0.478 4.478 8 H 0.109 0.891 9 C -0.133 4.133 10 N -0.434 5.434 11 Si 0.726 3.274 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.167 1.167 15 C -0.211 4.211 16 C -0.047 4.047 17 C -0.005 4.005 18 C -0.120 4.120 19 C -0.131 4.131 20 C -0.073 4.073 21 Cl -0.060 7.060 22 C -0.133 4.133 23 C -0.104 4.104 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.415 -13.073 0.655 13.311 hybrid contribution 0.219 -0.298 0.498 0.620 sum -2.196 -13.371 1.153 13.599 Atomic orbital electron populations 1.22770 0.80657 1.02096 1.00486 1.85879 1.19285 1.27858 1.90798 1.18433 0.90505 0.83408 1.10728 1.20507 0.97959 0.92707 1.06540 1.20725 0.94544 0.95567 1.07688 1.17620 0.91535 0.92805 0.91225 1.19352 1.00826 0.95523 1.32053 0.89082 1.26082 0.95169 0.95795 0.96227 1.69711 1.09910 1.28007 1.35783 0.86466 0.80150 0.80354 0.80391 1.19362 1.21618 1.16704 1.20978 0.98356 0.90705 1.11101 1.17682 0.89103 0.91604 1.06359 1.19009 0.93959 0.93650 0.93919 1.21301 0.94889 0.96945 0.98835 1.20906 1.00573 0.92954 0.98686 1.20863 0.97021 0.89049 1.00383 1.98332 1.72575 1.36784 1.98265 1.20903 0.95292 0.98504 0.98560 1.21182 0.98622 0.92075 0.98506 0.93727 0.89755 0.93731 0.87676 0.87622 0.90463 0.87105 0.84852 0.85290 0.85418 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 9.80 101.05 0.99 1.47 16 2 O -0.32 -5.78 8.84 -18.52 -0.16 -5.95 16 3 C 0.01 0.26 6.63 -38.44 -0.25 0.01 16 4 C -0.16 -3.14 8.95 -39.90 -0.36 -3.50 16 5 C -0.17 -3.64 9.72 -39.23 -0.38 -4.02 16 6 C 0.07 1.72 5.10 -106.85 -0.55 1.18 16 7 C -0.45 -11.72 9.55 -37.84 -0.36 -12.08 16 8 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 9 C 0.09 2.20 5.40 -17.34 -0.09 2.11 16 10 N -0.81 -21.21 13.93 55.54 0.77 -20.44 16 11 Si 0.90 20.52 24.51 -169.99 -4.17 16.35 16 12 H -0.27 -5.97 6.70 56.52 0.38 -5.59 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.24 -5.69 6.87 56.52 0.39 -5.30 16 15 C -0.19 -4.46 6.61 -38.55 -0.25 -4.72 16 16 C -0.05 -1.00 5.48 -104.80 -0.57 -1.57 16 17 C -0.01 -0.10 5.27 -104.90 -0.55 -0.65 16 18 C -0.10 -1.75 9.50 -39.25 -0.37 -2.12 16 19 C -0.11 -1.70 9.81 -39.60 -0.39 -2.09 16 20 C -0.05 -0.69 6.32 -39.43 -0.25 -0.94 16 21 Cl -0.09 -1.13 28.95 -51.86 -1.50 -2.64 16 22 C -0.11 -1.69 9.81 -39.59 -0.39 -2.07 16 23 C -0.09 -1.44 8.78 -39.25 -0.34 -1.79 16 24 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.56 7.64 -51.93 -0.40 0.16 16 27 H 0.11 1.76 6.26 -52.49 -0.33 1.43 16 28 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 29 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 30 H 0.11 2.60 4.71 -52.48 -0.25 2.35 16 31 H 0.13 2.22 8.04 -52.49 -0.42 1.80 16 32 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.13 2.15 7.70 -52.49 -0.40 1.74 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -26.90 304.32 -8.08 -34.98 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.48 Total: 3.90 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: -4.13 Total: -30.79 kcal Atomic # 7 Polarization: -21.21 SS G_CDS: 0.77 Total: -20.44 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.16 Total: -5.95 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.17 Total: 16.35 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.90 -8.08 -34.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236087615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.943 kcal (2) G-P(sol) polarization free energy of solvation -26.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds