Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35608 * 117.00164 * 2 1 4 4 C 1.39143 * 119.88103 * 0.21153 * 3 2 1 5 5 C 1.36414 * 120.43587 * 180.25675 * 4 3 2 6 6 C 1.40914 * 120.19083 * 359.78770 * 5 4 3 7 7 C 1.41233 * 120.12263 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00461 * 330.10396 * 7 6 5 9 9 C 1.39865 * 120.00438 * 150.10757 * 7 6 5 10 10 N 1.30893 * 120.00584 * 161.71297 * 9 7 6 11 11 Si 1.86796 * 119.99589 * 341.71749 * 9 7 6 12 12 H 1.48503 * 109.47215 * 95.41380 * 11 9 7 13 13 H 1.48505 * 109.47101 * 215.40875 * 11 9 7 14 14 H 1.48500 * 109.47266 * 335.41290 * 11 9 7 15 15 C 1.40616 * 119.75920 * 359.97438 * 6 5 4 16 16 C 1.38601 * 119.57030 * 0.02562 * 15 6 5 17 17 C 1.48331 * 120.09646 * 179.97438 * 16 15 6 18 18 C 1.39375 * 120.10936 * 310.00009 * 17 16 15 19 19 C 1.37986 * 119.88652 * 179.97438 * 18 17 16 20 20 C 1.38445 * 120.11453 * 0.27484 * 19 18 17 21 21 Cl 1.73596 * 119.89254 * 179.70492 * 20 19 18 22 22 C 1.38450 * 120.21884 * 359.44965 * 20 19 18 23 23 C 1.37993 * 120.10965 * 0.54927 * 22 20 19 24 24 H 1.08999 * 109.47153 * 60.00239 * 1 2 3 25 25 H 1.09000 * 109.47077 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47356 * 300.00337 * 1 2 3 27 27 H 1.07994 * 119.78743 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.91009 * 179.76208 * 5 4 3 29 29 H 0.96990 * 120.00474 * 180.02562 * 10 9 7 30 30 H 1.08004 * 120.21651 * 179.97438 * 15 6 5 31 31 H 1.07999 * 120.05871 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.94176 * 180.02562 * 19 18 17 33 33 H 1.07991 * 119.94319 * 180.25658 * 22 20 19 34 34 H 1.07990 * 120.05584 * 179.75043 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2845 2.3737 0.0045 5 6 1.8920 3.5950 -0.0008 6 6 3.2981 3.6871 -0.0062 7 6 3.9256 4.9523 -0.0111 8 1 3.4374 5.7955 -0.4771 9 6 5.1794 5.1136 0.5875 10 7 5.9188 6.1515 0.2886 11 14 5.7986 3.8476 1.8136 12 1 6.6628 2.8628 1.1145 13 1 6.5829 4.5287 2.8749 14 1 4.6426 3.1449 2.4260 15 6 4.0743 2.5145 -0.0057 16 6 3.4467 1.2788 -0.0004 17 6 4.2541 0.0345 -0.0004 18 6 5.2814 -0.1324 -0.9274 19 6 6.0299 -1.2916 -0.9230 20 6 5.7583 -2.2903 -0.0034 21 17 6.6987 -3.7495 -0.0079 22 6 4.7427 -2.1269 0.9232 23 6 3.9884 -0.9714 0.9270 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2064 2.3109 0.0075 28 1 1.2937 4.4942 -0.0011 29 1 6.7884 6.2631 0.7035 30 1 5.1526 2.5765 -0.0103 31 1 5.4917 0.6445 -1.6475 32 1 6.8264 -1.4217 -1.6407 33 1 4.5374 -2.9071 1.6411 34 1 3.1937 -0.8466 1.6475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236087615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -20.025585 kcal Electronic energy + Delta-G solvation = -19773.956200 eV Core-core repulsion = 16661.712230 eV Total energy + Delta-G solvation = -3112.243970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.04949 -39.75119 -38.23758 -37.40166 -35.29641 -33.49316 -32.09607 -31.67842 -29.77472 -28.31314 -26.32189 -24.34862 -23.76305 -22.66369 -21.60774 -19.36527 -18.88417 -17.94812 -17.16471 -16.83242 -16.44740 -16.41356 -15.97945 -15.29836 -14.93751 -14.84258 -14.54171 -14.44704 -14.31812 -14.11319 -13.66145 -13.16115 -12.82377 -12.70231 -12.62691 -12.49879 -12.38162 -12.05623 -11.87238 -11.77135 -11.65422 -11.33020 -10.96152 -10.04738 -10.01501 -9.33362 -8.88055 -8.83303 -6.39316 -0.07299 0.34813 0.76572 0.80658 1.12967 1.25386 1.35323 1.45081 2.09736 2.50395 2.66297 2.76893 3.42635 3.75567 3.88047 3.94759 4.14471 4.36621 4.38493 4.46624 4.52405 4.56654 4.66288 4.76246 4.81739 4.90275 5.00251 5.08937 5.15143 5.22783 5.34695 5.51889 5.59778 5.66033 5.83161 5.89874 6.06974 6.31073 6.57621 6.80179 6.91118 8.21520 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.006169 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.677205 B = 4537.916908 C = 6094.291756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C 0.034 3.966 4 C -0.158 4.158 5 C -0.172 4.172 6 C 0.048 3.952 7 C -0.483 4.483 8 H 0.061 0.939 9 C 0.054 3.946 10 N -0.853 5.853 11 Si 0.948 3.052 12 H -0.262 1.262 13 H -0.278 1.278 14 H -0.254 1.254 15 C -0.199 4.199 16 C -0.059 4.059 17 C -0.035 4.035 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.046 4.046 21 Cl -0.066 7.066 22 C -0.107 4.107 23 C -0.089 4.089 24 H 0.053 0.947 25 H 0.116 0.884 26 H 0.056 0.944 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.291 0.709 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -16.661 1.269 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.244 6.244 3 C -0.011 4.011 4 C -0.176 4.176 5 C -0.191 4.191 6 C 0.046 3.954 7 C -0.513 4.513 8 H 0.079 0.921 9 C -0.160 4.160 10 N -0.480 5.480 11 Si 0.773 3.227 12 H -0.188 1.188 13 H -0.204 1.204 14 H -0.178 1.178 15 C -0.218 4.218 16 C -0.060 4.060 17 C -0.035 4.035 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.072 4.072 21 Cl -0.037 7.037 22 C -0.125 4.125 23 C -0.108 4.108 24 H 0.071 0.929 25 H 0.134 0.866 26 H 0.075 0.925 27 H 0.160 0.840 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.332 -16.782 1.271 17.156 hybrid contribution 0.289 0.523 0.236 0.642 sum -3.043 -16.259 1.507 16.610 Atomic orbital electron populations 1.23169 0.77865 1.04692 1.01433 1.85897 1.22062 1.26283 1.90155 1.18652 0.90536 0.84553 1.07355 1.20839 0.99913 0.91573 1.05278 1.20930 0.93828 0.97070 1.07282 1.17749 0.92832 0.92431 0.92422 1.19321 1.01936 0.95689 1.34339 0.92128 1.26595 0.95149 0.97118 0.97125 1.69741 1.10815 1.29763 1.37703 0.85727 0.79394 0.78671 0.78931 1.18808 1.20410 1.17759 1.20972 0.98030 0.91348 1.11451 1.17949 0.90244 0.92028 1.05744 1.19023 0.95082 0.93514 0.95898 1.21349 0.95152 0.97864 0.98868 1.21116 1.00504 0.92139 0.99056 1.21020 0.96860 0.89629 0.99740 1.98346 1.71932 1.35280 1.98166 1.21162 0.94405 0.98274 0.98679 1.21229 0.99152 0.92263 0.98114 0.92858 0.86564 0.92547 0.83989 0.86840 0.89828 0.88015 0.85388 0.83088 0.82634 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.80 113.37 1.11 1.63 16 2 O -0.33 -10.70 8.84 -89.19 -0.79 -11.49 16 3 C 0.03 1.30 6.63 23.01 0.15 1.45 16 4 C -0.16 -5.93 8.95 22.06 0.20 -5.73 16 5 C -0.17 -7.53 9.72 22.50 0.22 -7.32 16 6 C 0.05 2.40 5.10 -21.31 -0.11 2.29 16 7 C -0.48 -26.72 9.55 23.40 0.22 -26.50 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 9 C 0.05 2.90 5.40 85.23 0.46 3.36 16 10 N -0.85 -47.00 13.93 21.81 0.30 -46.69 16 11 Si 0.95 43.49 24.51 68.60 1.68 45.17 16 12 H -0.26 -11.63 6.70 99.48 0.67 -10.96 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.25 -11.87 6.87 99.48 0.68 -11.19 16 15 C -0.20 -9.38 6.61 22.94 0.15 -9.22 16 16 C -0.06 -2.47 5.48 -19.98 -0.11 -2.58 16 17 C -0.03 -1.28 5.27 -20.04 -0.11 -1.38 16 18 C -0.11 -3.81 9.50 22.48 0.21 -3.60 16 19 C -0.11 -3.05 9.81 22.26 0.22 -2.84 16 20 C -0.05 -1.21 6.32 22.37 0.14 -1.07 16 21 Cl -0.07 -1.47 28.95 -2.72 -0.08 -1.55 16 22 C -0.11 -2.80 9.81 22.26 0.22 -2.58 16 23 C -0.09 -2.80 8.78 22.48 0.20 -2.60 16 24 H 0.05 1.13 7.66 -2.39 -0.02 1.11 16 25 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.16 7.64 -2.39 -0.02 1.14 16 27 H 0.14 4.23 6.26 -2.91 -0.02 4.21 16 28 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 29 H 0.29 14.53 8.30 -92.72 -0.77 13.76 16 30 H 0.10 4.91 4.71 -2.91 -0.01 4.89 16 31 H 0.13 4.29 8.04 -2.91 -0.02 4.27 16 32 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.16 3.16 8.06 -2.92 -0.02 3.14 16 34 H 0.13 4.04 7.70 -2.92 -0.02 4.02 16 Total: -1.00 -59.97 304.32 5.36 -54.61 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.06 Total: 16.63 kcal Atomic # 6 Polarization: -59.87 SS G_CDS: 3.18 Total: -56.69 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.30 Total: -46.69 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.79 Total: -11.49 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.68 Total: 45.17 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -59.97 5.36 -54.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236087615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.589 kcal (2) G-P(sol) polarization free energy of solvation -59.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds