Wall clock time and date at job start Tue Mar 31 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35606 * 116.99810 * 2 1 4 4 C 1.38514 * 120.08219 * 0.02562 * 3 2 1 5 5 C 1.38030 * 120.30856 * 179.97438 * 4 3 2 6 6 C 1.39938 * 120.47067 * 0.02562 * 5 4 3 7 7 C 1.48369 * 119.91910 * 179.97438 * 6 5 4 8 8 C 1.39365 * 120.10420 * 180.25078 * 7 6 5 9 9 C 1.37994 * 119.88462 * 180.25236 * 8 7 6 10 10 C 1.38444 * 120.10900 * 359.47523 * 9 8 7 11 11 Cl 1.73600 * 119.88930 * 180.27455 * 10 9 8 12 12 C 1.38440 * 120.22195 * 0.29811 * 10 9 8 13 13 C 1.37993 * 120.10783 * 359.95701 * 12 10 9 14 14 C 1.38615 * 120.15958 * 0.25165 * 6 5 4 15 15 C 1.40523 * 119.68834 * 359.47698 * 14 6 5 16 16 C 1.41186 * 120.23320 * 180.24799 * 15 14 6 17 17 H 1.08003 * 120.00025 * 204.86754 * 16 15 14 18 18 C 1.39903 * 119.99668 * 24.86786 * 16 15 14 19 19 N 1.30881 * 120.00260 * 17.61783 * 18 16 15 20 20 Si 1.86802 * 119.99871 * 197.61810 * 18 16 15 21 21 H 1.48497 * 109.47113 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47092 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47048 * 240.00072 * 20 18 16 24 24 H 1.08993 * 109.47358 * 299.99520 * 1 2 3 25 25 H 1.09003 * 109.46886 * 60.00371 * 1 2 3 26 26 H 1.08998 * 109.46593 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.84686 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.76904 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.05955 * 0.02862 * 8 7 6 30 30 H 1.07998 * 119.94561 * 179.75388 * 9 8 7 31 31 H 1.07995 * 119.94728 * 179.97438 * 12 10 9 32 32 H 1.07999 * 120.05416 * 180.02562 * 13 12 10 33 33 H 1.07996 * 120.15842 * 179.72262 * 14 6 5 34 34 H 0.96997 * 120.00502 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3710 0.0005 5 6 1.9135 3.6033 0.0011 6 6 3.3100 3.6936 0.0005 7 6 3.9655 5.0246 0.0005 8 6 5.3560 5.1191 -0.0053 9 6 5.9609 6.3593 0.0000 10 6 5.1890 7.5086 0.0001 11 17 5.9560 9.0659 -0.0004 12 6 3.8074 7.4200 0.0012 13 6 3.1930 6.1844 0.0012 14 6 4.0823 2.5426 -0.0058 15 6 3.4563 1.2844 -0.0005 16 6 4.2318 0.1046 -0.0016 17 1 3.8175 -0.8135 -0.3913 18 6 5.5368 0.1249 0.5021 19 7 5.9248 1.1072 1.2752 20 14 6.7257 -1.2500 0.0713 21 1 6.0474 -2.2324 -0.8118 22 1 7.9040 -0.6831 -0.6328 23 1 7.1712 -1.9272 1.3156 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 0.2134 2.3131 0.0005 28 1 1.3181 4.5044 0.0019 29 1 5.9590 4.2231 -0.0102 30 1 7.0383 6.4336 -0.0004 31 1 3.2096 8.3194 0.0017 32 1 2.1151 6.1164 0.0015 33 1 5.1600 2.6123 -0.0107 34 1 6.8294 1.1211 1.6248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:36 Heat of formation + Delta-G solvation = -7.184794 kcal Electronic energy + Delta-G solvation = -19431.815066 eV Core-core repulsion = 16320.127914 eV Total energy + Delta-G solvation = -3111.687152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.24395 -38.44183 -36.50825 -35.83138 -33.80304 -31.27085 -30.88999 -29.79250 -27.69035 -26.48961 -25.27294 -22.62447 -22.43578 -20.65175 -19.83059 -17.70753 -16.72782 -16.59263 -15.59225 -15.14276 -14.81244 -14.70432 -14.30721 -13.84906 -13.37027 -13.26100 -13.25610 -12.78999 -12.39843 -11.94592 -11.82625 -11.52424 -11.35931 -11.21977 -11.19168 -10.94959 -10.86856 -10.59108 -10.41248 -10.09906 -9.94237 -9.46451 -9.25423 -8.71634 -8.46658 -7.60690 -6.90924 -6.66357 -4.32665 1.28354 1.66556 2.36392 2.68134 2.87061 3.07374 3.11879 3.14857 3.92345 4.09064 4.41330 4.63382 5.10826 5.16150 5.41628 5.50989 5.68029 5.69851 5.74791 5.76558 5.90561 5.98207 6.05139 6.21283 6.30652 6.53488 6.61591 6.71098 6.78907 7.04130 7.13140 7.25463 7.29112 7.55348 7.61437 7.88035 8.07870 8.28436 8.60063 8.75665 8.95545 10.14359 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.004869 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.233641 B = 5748.897666 C = 7476.696221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C 0.024 3.976 4 C -0.180 4.180 5 C -0.189 4.189 6 C -0.078 4.078 7 C 0.004 3.996 8 C -0.106 4.106 9 C -0.107 4.107 10 C -0.056 4.056 11 Cl -0.092 7.092 12 C -0.110 4.110 13 C -0.117 4.117 14 C -0.122 4.122 15 C 0.093 3.907 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.275 1.275 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.140 0.860 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 7.048 -1.811 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.020 4.020 4 C -0.199 4.199 5 C -0.208 4.208 6 C -0.079 4.079 7 C 0.004 3.996 8 C -0.124 4.124 9 C -0.126 4.126 10 C -0.083 4.083 11 Cl -0.064 7.064 12 C -0.129 4.129 13 C -0.135 4.135 14 C -0.142 4.142 15 C 0.090 3.910 16 C -0.473 4.473 17 H 0.102 0.898 18 C -0.143 4.143 19 N -0.423 5.423 20 Si 0.733 3.267 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.200 1.200 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.157 0.843 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.789 7.064 -1.668 7.476 hybrid contribution 0.301 -0.205 0.005 0.365 sum -1.488 6.859 -1.663 7.213 Atomic orbital electron populations 1.22759 0.81574 1.01884 1.00013 1.85966 1.18369 1.28229 1.89895 1.19375 0.92419 0.82679 1.07543 1.20553 0.97563 0.92707 1.09110 1.20171 0.92971 0.95493 1.12188 1.18383 0.92929 0.90715 1.05857 1.19203 0.92760 0.93363 0.94255 1.21398 0.94598 0.97164 0.99249 1.20933 0.99784 0.90934 1.00935 1.20821 0.92979 0.85579 1.08890 1.98324 1.81994 1.28753 1.97281 1.20856 0.92301 0.98242 1.01488 1.21205 1.00222 0.90927 1.01151 1.21272 0.99622 0.89639 1.03640 1.16984 0.87323 0.93950 0.92752 1.19456 0.96477 0.96565 1.34835 0.89782 1.25890 0.98858 0.96972 0.92619 1.69827 1.19049 1.30852 1.22592 0.86250 0.79910 0.81260 0.79313 1.18336 1.19703 1.20005 0.94035 0.94127 0.89926 0.88252 0.88592 0.84267 0.85508 0.85668 0.85154 0.84963 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.81 101.05 0.99 1.54 16 2 O -0.31 -6.96 9.76 -18.51 -0.18 -7.14 16 3 C 0.02 0.59 6.72 -38.28 -0.26 0.33 16 4 C -0.18 -3.87 9.01 -39.56 -0.36 -4.22 16 5 C -0.19 -3.96 9.42 -39.02 -0.37 -4.33 16 6 C -0.08 -1.73 5.87 -104.95 -0.62 -2.35 16 7 C 0.00 0.08 5.88 -104.89 -0.62 -0.53 16 8 C -0.11 -1.92 9.42 -39.25 -0.37 -2.29 16 9 C -0.11 -1.69 9.81 -39.59 -0.39 -2.08 16 10 C -0.06 -0.85 6.32 -39.43 -0.25 -1.10 16 11 Cl -0.09 -1.22 28.95 -51.86 -1.50 -2.72 16 12 C -0.11 -1.63 9.81 -39.60 -0.39 -2.02 16 13 C -0.12 -1.93 9.42 -39.26 -0.37 -2.30 16 14 C -0.12 -2.99 8.05 -38.58 -0.31 -3.30 16 15 C 0.09 2.40 5.58 -106.72 -0.60 1.80 16 16 C -0.44 -11.58 8.71 -37.84 -0.33 -11.91 16 17 H 0.08 2.20 7.64 -52.48 -0.40 1.79 16 18 C 0.07 1.79 5.14 -17.33 -0.09 1.70 16 19 N -0.80 -19.70 10.97 55.55 0.61 -19.09 16 20 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H 0.04 0.63 7.65 -51.93 -0.40 0.24 16 25 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.10 1.84 6.27 -52.49 -0.33 1.51 16 28 H 0.10 1.74 6.17 -52.49 -0.32 1.42 16 29 H 0.14 2.61 6.19 -52.49 -0.32 2.28 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.13 1.95 6.18 -52.49 -0.32 1.62 16 33 H 0.13 3.25 4.29 -52.49 -0.23 3.03 16 34 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -26.88 304.19 -8.96 -35.84 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.13 Total: 6.28 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -4.31 Total: -31.06 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.18 Total: -7.14 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.88 -8.96 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.653 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds