Wall clock time and date at job start Tue Mar 31 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35606 * 116.99810 * 2 1 4 4 C 1.38514 * 120.08219 * 0.02562 * 3 2 1 5 5 C 1.38030 * 120.30856 * 179.97438 * 4 3 2 6 6 C 1.39938 * 120.47067 * 0.02562 * 5 4 3 7 7 C 1.48369 * 119.91910 * 179.97438 * 6 5 4 8 8 C 1.39365 * 120.10420 * 180.25078 * 7 6 5 9 9 C 1.37994 * 119.88462 * 180.25236 * 8 7 6 10 10 C 1.38444 * 120.10900 * 359.47523 * 9 8 7 11 11 Cl 1.73600 * 119.88930 * 180.27455 * 10 9 8 12 12 C 1.38440 * 120.22195 * 0.29811 * 10 9 8 13 13 C 1.37993 * 120.10783 * 359.95701 * 12 10 9 14 14 C 1.38615 * 120.15958 * 0.25165 * 6 5 4 15 15 C 1.40523 * 119.68834 * 359.47698 * 14 6 5 16 16 C 1.41186 * 120.23320 * 180.24799 * 15 14 6 17 17 H 1.08003 * 120.00025 * 204.86754 * 16 15 14 18 18 C 1.39903 * 119.99668 * 24.86786 * 16 15 14 19 19 N 1.30881 * 120.00260 * 17.61783 * 18 16 15 20 20 Si 1.86802 * 119.99871 * 197.61810 * 18 16 15 21 21 H 1.48497 * 109.47113 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47092 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47048 * 240.00072 * 20 18 16 24 24 H 1.08993 * 109.47358 * 299.99520 * 1 2 3 25 25 H 1.09003 * 109.46886 * 60.00371 * 1 2 3 26 26 H 1.08998 * 109.46593 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.84686 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.76904 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.05955 * 0.02862 * 8 7 6 30 30 H 1.07998 * 119.94561 * 179.75388 * 9 8 7 31 31 H 1.07995 * 119.94728 * 179.97438 * 12 10 9 32 32 H 1.07999 * 120.05416 * 180.02562 * 13 12 10 33 33 H 1.07996 * 120.15842 * 179.72262 * 14 6 5 34 34 H 0.96997 * 120.00502 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3710 0.0005 5 6 1.9135 3.6033 0.0011 6 6 3.3100 3.6936 0.0005 7 6 3.9655 5.0246 0.0005 8 6 5.3560 5.1191 -0.0053 9 6 5.9609 6.3593 0.0000 10 6 5.1890 7.5086 0.0001 11 17 5.9560 9.0659 -0.0004 12 6 3.8074 7.4200 0.0012 13 6 3.1930 6.1844 0.0012 14 6 4.0823 2.5426 -0.0058 15 6 3.4563 1.2844 -0.0005 16 6 4.2318 0.1046 -0.0016 17 1 3.8175 -0.8135 -0.3913 18 6 5.5368 0.1249 0.5021 19 7 5.9248 1.1072 1.2752 20 14 6.7257 -1.2500 0.0713 21 1 6.0474 -2.2324 -0.8118 22 1 7.9040 -0.6831 -0.6328 23 1 7.1712 -1.9272 1.3156 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 0.2134 2.3131 0.0005 28 1 1.3181 4.5044 0.0019 29 1 5.9590 4.2231 -0.0102 30 1 7.0383 6.4336 -0.0004 31 1 3.2096 8.3194 0.0017 32 1 2.1151 6.1164 0.0015 33 1 5.1600 2.6123 -0.0107 34 1 6.8294 1.1211 1.6248 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236088470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:36 Heat of formation + Delta-G solvation = -19.291092 kcal Electronic energy + Delta-G solvation = -19432.340034 eV Core-core repulsion = 16320.127914 eV Total energy + Delta-G solvation = -3112.212120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75065 -39.92565 -37.93053 -37.20371 -35.56246 -32.77010 -32.24466 -31.45826 -29.20213 -27.97692 -26.99517 -24.04395 -23.88193 -22.27764 -21.39061 -19.37897 -18.36674 -17.99386 -17.21232 -16.64964 -16.32696 -16.21898 -15.73478 -15.22545 -14.95758 -14.67863 -14.51094 -14.29147 -14.06008 -13.54310 -13.23392 -13.08943 -12.84532 -12.74162 -12.58647 -12.43895 -12.27523 -12.09787 -11.78971 -11.62169 -11.57884 -11.11979 -11.02989 -9.97913 -9.87847 -9.40759 -8.66933 -8.32587 -6.21830 -0.11331 0.39431 0.96022 1.17439 1.22219 1.39256 1.50629 1.53925 2.23846 2.59646 2.90701 2.95654 3.72609 3.85671 3.96025 3.98377 4.34346 4.36797 4.44722 4.48615 4.50333 4.56979 4.75155 4.78164 5.00990 5.04941 5.16721 5.22323 5.28935 5.35845 5.48191 5.65559 5.79416 5.83319 5.93223 6.16297 6.31486 6.49056 6.79483 6.92045 7.21827 8.37387 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.004869 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.233641 B = 5748.897666 C = 7476.696221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.007 3.993 4 C -0.182 4.182 5 C -0.183 4.183 6 C -0.084 4.084 7 C -0.027 4.027 8 C -0.119 4.119 9 C -0.108 4.108 10 C -0.053 4.053 11 Cl -0.069 7.069 12 C -0.103 4.103 13 C -0.111 4.111 14 C -0.145 4.145 15 C 0.054 3.946 16 C -0.484 4.484 17 H 0.068 0.932 18 C 0.037 3.963 19 N -0.827 5.827 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.262 1.262 23 H -0.267 1.267 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.119 0.881 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 9.229 -1.955 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.037 4.037 4 C -0.201 4.201 5 C -0.202 4.202 6 C -0.085 4.085 7 C -0.027 4.027 8 C -0.137 4.137 9 C -0.126 4.126 10 C -0.079 4.079 11 Cl -0.040 7.040 12 C -0.121 4.121 13 C -0.129 4.129 14 C -0.165 4.165 15 C 0.051 3.949 16 C -0.514 4.514 17 H 0.086 0.914 18 C -0.177 4.177 19 N -0.454 5.454 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.186 1.186 23 H -0.192 1.192 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.128 0.872 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.162 0.838 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.137 0.863 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.738 9.259 -1.812 9.824 hybrid contribution 0.477 -0.664 0.048 0.819 sum -2.262 8.595 -1.764 9.061 Atomic orbital electron populations 1.23109 0.78495 1.04254 1.01132 1.85911 1.21643 1.27983 1.89935 1.19580 0.92314 0.84116 1.07729 1.20925 0.99186 0.91980 1.08021 1.20650 0.92842 0.96765 1.09934 1.18710 0.93678 0.91497 1.04578 1.19196 0.93351 0.93006 0.97149 1.21317 0.94481 0.97597 1.00334 1.21068 1.00838 0.90330 1.00379 1.20990 0.93422 0.86317 1.07191 1.98339 1.81686 1.26934 1.97073 1.21186 0.92395 0.98746 0.99798 1.21378 1.00981 0.90430 1.00081 1.21263 0.99441 0.90406 1.05371 1.17396 0.88923 0.94521 0.94028 1.19523 0.98192 0.96382 1.37299 0.91413 1.26601 0.99743 0.99342 0.91991 1.69873 1.19696 1.32440 1.23343 0.85251 0.77704 0.78233 0.79100 1.18728 1.18636 1.19178 0.92968 0.92659 0.87157 0.84956 0.85010 0.86280 0.83790 0.82394 0.83285 0.86296 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.81 113.37 1.11 1.89 16 2 O -0.34 -15.55 9.76 -89.16 -0.87 -16.42 16 3 C 0.01 0.36 6.72 23.11 0.16 0.52 16 4 C -0.18 -7.65 9.01 22.29 0.20 -7.45 16 5 C -0.18 -7.44 9.42 22.63 0.21 -7.22 16 6 C -0.08 -3.77 5.87 -20.08 -0.12 -3.89 16 7 C -0.03 -1.02 5.88 -20.04 -0.12 -1.14 16 8 C -0.12 -4.38 9.42 22.48 0.21 -4.17 16 9 C -0.11 -3.26 9.81 22.26 0.22 -3.05 16 10 C -0.05 -1.45 6.32 22.37 0.14 -1.30 16 11 Cl -0.07 -1.61 28.95 -2.72 -0.08 -1.69 16 12 C -0.10 -2.68 9.81 22.26 0.22 -2.46 16 13 C -0.11 -3.36 9.42 22.48 0.21 -3.14 16 14 C -0.15 -7.49 8.05 22.92 0.18 -7.31 16 15 C 0.05 2.94 5.58 -21.22 -0.12 2.82 16 16 C -0.48 -26.92 8.71 23.40 0.20 -26.72 16 17 H 0.07 3.81 7.64 -2.91 -0.02 3.79 16 18 C 0.04 1.90 5.14 85.24 0.44 2.33 16 19 N -0.83 -43.04 10.97 21.82 0.24 -42.80 16 20 Si 0.98 39.21 29.59 68.60 2.03 41.24 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 24 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 25 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 26 H 0.11 2.76 8.14 -2.39 -0.02 2.75 16 27 H 0.13 4.54 6.27 -2.91 -0.02 4.52 16 28 H 0.13 4.32 6.17 -2.91 -0.02 4.30 16 29 H 0.12 4.79 6.19 -2.91 -0.02 4.77 16 30 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.15 3.87 6.18 -2.91 -0.02 3.85 16 33 H 0.12 6.31 4.29 -2.91 -0.01 6.30 16 34 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 Total: -1.00 -61.47 304.19 5.62 -55.86 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 1.14 Total: 24.10 kcal Atomic # 6 Polarization: -63.44 SS G_CDS: 3.16 Total: -60.29 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.24 Total: -42.80 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.87 Total: -16.42 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -61.47 5.62 -55.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.565 kcal (2) G-P(sol) polarization free energy of solvation -61.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds