Wall clock time and date at job start Tue Mar 31 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35673 * 117.00480 * 2 1 4 4 C 1.37975 * 120.18998 * 359.97438 * 3 2 1 5 5 C 1.39640 * 119.93116 * 180.02562 * 4 3 2 6 6 C 1.48006 * 119.83669 * 179.97438 * 5 4 3 7 7 C 1.39591 * 120.12921 * 359.72911 * 6 5 4 8 8 C 1.37919 * 119.86645 * 179.72208 * 7 6 5 9 9 C 1.38517 * 120.12588 * 0.55001 * 8 7 6 10 10 Cl 1.73602 * 119.86578 * 179.74235 * 9 8 7 11 11 C 1.38513 * 120.26063 * 359.72237 * 9 8 7 12 12 C 1.37912 * 120.13186 * 0.02562 * 11 9 8 13 13 C 1.40086 * 120.31929 * 0.02562 * 5 4 3 14 14 C 1.36108 * 120.39419 * 359.66249 * 13 5 4 15 15 C 1.40913 * 120.05937 * 0.61440 * 14 13 5 16 16 C 1.40829 * 120.16012 * 179.68530 * 15 14 13 17 17 H 1.07996 * 120.00296 * 205.36066 * 16 15 14 18 18 C 1.40002 * 120.00098 * 25.36390 * 16 15 14 19 19 N 1.30836 * 119.99348 * 17.44645 * 18 16 15 20 20 Si 1.86798 * 120.00218 * 197.44507 * 18 16 15 21 21 H 1.48496 * 109.47218 * 265.19383 * 20 18 16 22 22 H 1.48501 * 109.46743 * 25.19751 * 20 18 16 23 23 H 1.48500 * 109.46938 * 145.19278 * 20 18 16 24 24 H 1.08999 * 109.46997 * 300.00235 * 1 2 3 25 25 H 1.08999 * 109.46804 * 59.99861 * 1 2 3 26 26 H 1.08991 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.03725 * 0.04515 * 4 3 2 28 28 H 1.08000 * 120.07054 * 359.97190 * 7 6 5 29 29 H 1.07999 * 119.93478 * 180.27260 * 8 7 6 30 30 H 1.07997 * 119.93407 * 179.97438 * 11 9 8 31 31 H 1.07996 * 120.06313 * 180.02562 * 12 11 9 32 32 H 1.08004 * 119.79862 * 180.02562 * 13 5 4 33 33 H 1.08002 * 119.97017 * 180.32311 * 14 13 5 34 34 H 0.97005 * 119.99472 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 1.2975 2.3685 -0.0005 5 6 1.9372 3.6098 -0.0011 6 6 1.1333 4.8525 -0.0022 7 6 -0.2610 4.7850 -0.0085 8 6 -1.0048 5.9464 -0.0037 9 6 -0.3709 7.1780 -0.0042 10 17 -1.3138 8.6356 -0.0050 11 6 1.0123 7.2511 -0.0038 12 6 1.7666 6.0965 -0.0033 13 6 3.3361 3.6845 -0.0016 14 6 4.0863 2.5488 0.0053 15 6 3.4578 1.2876 0.0000 16 6 4.2321 0.1113 0.0004 17 1 3.8246 -0.8035 -0.4038 18 6 5.5300 0.1277 0.5250 19 7 5.9060 1.1046 1.3098 20 14 6.7248 -1.2452 0.1044 21 1 6.6844 -2.2800 1.1686 22 1 6.3408 -1.8550 -1.1940 23 1 8.0992 -0.6918 0.0041 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2188 2.3164 -0.0002 28 1 -0.7563 3.8253 -0.0129 29 1 -2.0836 5.8955 -0.0041 30 1 1.5011 8.2141 -0.0046 31 1 2.8450 6.1548 -0.0025 32 1 3.8221 4.6490 -0.0016 33 1 5.1643 2.6144 0.0101 34 1 6.8051 1.1158 1.6736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236088948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:37 Heat of formation + Delta-G solvation = -19.927917 kcal Electronic energy + Delta-G solvation = -19309.788039 eV Core-core repulsion = 16197.548304 eV Total energy + Delta-G solvation = -3112.239735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78424 -39.80934 -37.91584 -37.25856 -35.67743 -32.90384 -32.17372 -30.60556 -30.26110 -28.07629 -26.75493 -24.00851 -23.83597 -21.97804 -21.67848 -19.48219 -18.55509 -17.70909 -17.25140 -16.65194 -16.24279 -15.97713 -15.85839 -15.68236 -14.83046 -14.63847 -14.46216 -14.28102 -14.07344 -13.67280 -13.37001 -13.00401 -12.85448 -12.73474 -12.49380 -12.38342 -12.29990 -12.08404 -11.84246 -11.59680 -11.41061 -11.31431 -11.08761 -9.99813 -9.96000 -9.05893 -8.82700 -8.58450 -6.21584 -0.10659 0.42895 1.08076 1.12951 1.23364 1.39034 1.50546 1.55845 2.20088 2.56355 2.89590 2.98071 3.69754 3.87042 3.99192 4.02050 4.26275 4.43080 4.46718 4.49101 4.50597 4.55836 4.74487 4.83173 4.97674 5.09482 5.10423 5.25200 5.29480 5.35301 5.46102 5.59113 5.78151 5.85224 5.99416 6.18887 6.23043 6.48009 6.72322 6.82555 7.19256 8.25959 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.003723 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.918128 B = 7519.817308 C = 8456.065437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.154 4.154 5 C -0.170 4.170 6 C -0.003 4.003 7 C -0.133 4.133 8 C -0.098 4.098 9 C -0.069 4.069 10 Cl -0.074 7.074 11 C -0.099 4.099 12 C -0.134 4.134 13 C -0.103 4.103 14 C -0.173 4.173 15 C 0.071 3.929 16 C -0.468 4.468 17 H 0.075 0.925 18 C 0.034 3.966 19 N -0.813 5.813 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.262 1.262 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 7.060 -1.864 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.050 4.050 4 C -0.173 4.173 5 C -0.172 4.172 6 C -0.003 4.003 7 C -0.152 4.152 8 C -0.117 4.117 9 C -0.095 4.095 10 Cl -0.046 7.046 11 C -0.117 4.117 12 C -0.152 4.152 13 C -0.121 4.121 14 C -0.193 4.193 15 C 0.069 3.931 16 C -0.497 4.497 17 H 0.093 0.907 18 C -0.182 4.182 19 N -0.438 5.438 20 Si 0.803 3.197 21 H -0.188 1.188 22 H -0.184 1.184 23 H -0.186 1.186 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.485 7.084 -1.710 11.185 hybrid contribution 0.403 -0.389 0.051 0.563 sum -8.082 6.695 -1.659 10.625 Atomic orbital electron populations 1.23100 0.78626 1.04322 1.00968 1.85916 1.21488 1.27681 1.90371 1.19240 0.92181 0.84005 1.09594 1.20971 0.98809 0.91350 1.06145 1.18132 0.92411 0.91316 1.15321 1.19072 0.93339 0.92483 0.95382 1.21278 0.92696 0.98744 1.02433 1.21099 1.01067 0.90017 0.99469 1.20972 0.92036 0.87594 1.08943 1.98335 1.72717 1.36326 1.97186 1.21095 0.91734 0.99411 0.99502 1.21319 1.00641 0.91043 1.02190 1.20717 0.93116 0.97628 1.00616 1.20729 0.99329 0.91242 1.07951 1.17546 0.88939 0.94652 0.92011 1.19678 0.98522 0.96847 1.34614 0.90732 1.26788 0.99863 0.99567 0.91950 1.69855 1.20486 1.32031 1.21429 0.85175 0.76937 0.77739 0.79824 1.18791 1.18383 1.18565 0.93153 0.92828 0.86980 0.85207 0.84706 0.83220 0.83412 0.84797 0.86580 0.87093 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 9.81 113.37 1.11 1.89 16 2 O -0.34 -15.35 9.78 -89.90 -0.88 -16.23 16 3 C -0.01 -0.29 6.71 23.01 0.15 -0.13 16 4 C -0.15 -6.58 8.40 22.55 0.19 -6.39 16 5 C -0.17 -7.19 5.89 -19.90 -0.12 -7.31 16 6 C 0.00 -0.09 5.88 -20.03 -0.12 -0.21 16 7 C -0.13 -4.00 9.42 22.52 0.21 -3.78 16 8 C -0.10 -2.52 9.81 22.26 0.22 -2.30 16 9 C -0.07 -1.78 6.33 22.40 0.14 -1.63 16 10 Cl -0.07 -1.65 28.95 -2.72 -0.08 -1.73 16 11 C -0.10 -2.62 9.81 22.26 0.22 -2.40 16 12 C -0.13 -4.15 9.43 22.52 0.21 -3.94 16 13 C -0.10 -4.61 9.35 22.22 0.21 -4.40 16 14 C -0.17 -8.86 8.61 22.43 0.19 -8.67 16 15 C 0.07 3.84 5.58 -21.19 -0.12 3.73 16 16 C -0.47 -25.32 8.69 23.33 0.20 -25.11 16 17 H 0.07 4.03 7.65 -2.91 -0.02 4.01 16 18 C 0.03 1.71 5.13 85.27 0.44 2.14 16 19 N -0.81 -41.28 10.97 21.84 0.24 -41.04 16 20 Si 0.98 37.56 29.59 68.60 2.03 39.59 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 24 H 0.05 1.46 7.66 -2.39 -0.02 1.44 16 25 H 0.05 1.51 7.66 -2.39 -0.02 1.49 16 26 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.13 4.63 4.41 -2.91 -0.01 4.62 16 28 H 0.14 3.69 6.18 -2.91 -0.02 3.68 16 29 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.13 3.97 6.17 -2.91 -0.02 3.95 16 32 H 0.12 4.56 6.16 -2.91 -0.02 4.54 16 33 H 0.11 5.87 6.18 -2.91 -0.02 5.86 16 34 H 0.29 13.27 8.30 -92.70 -0.77 12.50 16 Total: -1.00 -59.35 304.12 5.60 -53.74 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 1.14 Total: 24.17 kcal Atomic # 6 Polarization: -61.67 SS G_CDS: 3.15 Total: -58.52 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.24 Total: -41.04 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.88 Total: -16.23 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -59.35 5.60 -53.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.817 kcal (2) G-P(sol) polarization free energy of solvation -59.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds