Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35868 * 117.00597 * 2 1 4 4 C 1.39473 * 119.77969 * 0.02562 * 3 2 1 5 5 C 1.37932 * 120.62066 * 179.97438 * 4 3 2 6 6 C 1.39180 * 120.17028 * 359.97438 * 5 4 3 7 7 C 1.47819 * 120.22594 * 180.02562 * 6 5 4 8 8 C 1.39694 * 120.13165 * 309.99499 * 7 6 5 9 9 C 1.37879 * 119.85652 * 179.97438 * 8 7 6 10 10 C 1.38529 * 120.14229 * 0.28495 * 9 8 7 11 11 Cl 1.73595 * 119.86577 * 179.70319 * 10 9 8 12 12 C 1.38534 * 120.27175 * 359.43533 * 10 9 8 13 13 C 1.37881 * 120.14136 * 0.56513 * 12 10 9 14 14 C 1.41912 * 119.55433 * 0.29277 * 6 5 4 15 15 C 1.40876 * 120.30095 * 179.72346 * 14 6 5 16 16 H 1.08005 * 120.00096 * 333.02791 * 15 14 6 17 17 C 1.40042 * 119.99848 * 153.02082 * 15 14 6 18 18 N 1.30782 * 120.00170 * 343.95787 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 163.95697 * 17 15 14 20 20 H 1.48494 * 109.47362 * 90.00218 * 19 17 15 21 21 H 1.48507 * 109.47176 * 210.00199 * 19 17 15 22 22 H 1.48502 * 109.47025 * 329.99597 * 19 17 15 23 23 C 1.37927 * 119.78130 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47528 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46629 * 300.00317 * 1 2 3 26 26 H 1.09005 * 109.46599 * 59.99220 * 1 2 3 27 27 H 1.08001 * 119.69097 * 359.95744 * 4 3 2 28 28 H 1.08007 * 119.91639 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.07004 * 0.02562 * 8 7 6 30 30 H 1.08004 * 119.92837 * 179.97438 * 9 8 7 31 31 H 1.08007 * 119.92885 * 180.25861 * 12 10 9 32 32 H 1.07997 * 120.07176 * 179.74505 * 13 12 10 33 33 H 0.97002 * 120.00421 * 180.02562 * 18 17 15 34 34 H 1.07994 * 120.09199 * 0.03264 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2105 0.0000 4 6 1.2819 2.3774 0.0005 5 6 1.8902 3.6154 0.0011 6 6 3.2786 3.7126 0.0016 7 6 3.9317 5.0387 0.0028 8 6 3.5452 6.0115 -0.9223 9 6 4.1578 7.2467 -0.9158 10 6 5.1587 7.5220 0.0016 11 17 5.9305 9.0769 -0.0017 12 6 5.5424 6.5634 0.9252 13 6 4.9375 5.3243 0.9290 14 6 4.0630 2.5300 -0.0047 15 6 5.4695 2.6101 -0.0101 16 1 5.9596 3.4742 -0.4340 17 6 6.2322 1.5694 0.5343 18 7 5.6688 0.6860 1.3169 19 14 8.0543 1.4430 0.1425 20 1 8.8317 2.2070 1.1510 21 1 8.4696 0.0175 0.1736 22 1 8.3102 2.0037 -1.2086 23 6 3.4236 1.2773 0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 0.2040 2.3110 0.0003 28 1 1.2875 4.5116 0.0019 29 1 2.7676 5.7968 -1.6404 30 1 3.8602 7.9995 -1.6307 31 1 6.3204 6.7854 1.6406 32 1 5.2403 4.5765 1.6468 33 1 6.1971 -0.0347 1.6943 34 1 4.0097 0.3702 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236090702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = -12.497236 kcal Electronic energy + Delta-G solvation = -19622.841238 eV Core-core repulsion = 16510.923722 eV Total energy + Delta-G solvation = -3111.917516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.11889 -38.39395 -36.53328 -35.79328 -33.70425 -31.11802 -30.60419 -29.75121 -28.09895 -26.22642 -25.31103 -22.41893 -22.06673 -20.89324 -19.79276 -17.83394 -16.65616 -16.22557 -15.36574 -15.20547 -14.92732 -14.82394 -14.48820 -13.71227 -13.26893 -13.11525 -12.98281 -12.77546 -12.42297 -11.94657 -11.85951 -11.51446 -11.30600 -11.19265 -11.11167 -10.94479 -10.80483 -10.53746 -10.35629 -10.04705 -9.89465 -9.62823 -9.26565 -8.48645 -8.08590 -7.60211 -7.01737 -6.72321 -4.53663 1.62208 1.90087 2.54054 2.67365 2.89197 3.01692 3.05259 3.13267 3.83150 4.23104 4.28631 4.49251 5.32318 5.35560 5.49354 5.59545 5.68021 5.71443 5.85734 5.95035 6.01002 6.03911 6.25460 6.31360 6.53140 6.72072 6.76683 6.85931 6.90714 7.07723 7.27073 7.30802 7.43044 7.59338 7.69931 7.86067 7.93655 8.25435 8.62488 8.70555 8.78568 10.01350 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.005904 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.787399 B = 4741.309630 C = 6617.594197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.317 4.317 5 C -0.037 4.037 6 C -0.213 4.213 7 C 0.033 3.967 8 C -0.124 4.124 9 C -0.113 4.113 10 C -0.060 4.060 11 Cl -0.099 7.099 12 C -0.115 4.115 13 C -0.089 4.089 14 C 0.158 3.842 15 C -0.447 4.447 16 H 0.087 0.913 17 C 0.077 3.923 18 N -0.777 5.777 19 Si 0.904 3.096 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.193 4.193 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.285 0.715 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 5.511 -1.358 6.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.336 4.336 5 C -0.056 4.056 6 C -0.215 4.215 7 C 0.033 3.967 8 C -0.142 4.142 9 C -0.132 4.132 10 C -0.086 4.086 11 Cl -0.070 7.070 12 C -0.134 4.134 13 C -0.107 4.107 14 C 0.155 3.845 15 C -0.475 4.475 16 H 0.105 0.895 17 C -0.143 4.143 18 N -0.401 5.401 19 Si 0.728 3.272 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.213 4.213 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.274 5.243 -1.203 5.840 hybrid contribution 0.574 0.144 -0.078 0.597 sum -1.700 5.387 -1.281 5.793 Atomic orbital electron populations 1.22772 0.80669 1.01947 1.00560 1.86007 1.19595 1.29063 1.89669 1.19018 0.92468 0.82528 0.96847 1.20370 0.97428 0.92459 1.23372 1.20338 0.93197 0.95350 0.96679 1.18513 0.92124 0.90967 1.19872 1.18915 0.93118 0.92697 0.91964 1.21261 1.00988 0.92624 0.99367 1.20778 0.96305 0.97549 0.98566 1.20799 0.99521 0.86948 1.01381 1.98310 1.81148 1.29247 1.98341 1.20922 1.00840 0.93069 0.98551 1.21451 0.95471 0.94987 0.98791 1.17201 0.92737 0.88854 0.85747 1.19574 0.90949 1.03770 1.33219 0.89548 1.25978 1.01416 0.94196 0.92738 1.69805 1.38680 1.11229 1.20357 0.86347 0.81754 0.78531 0.80538 1.19188 1.19921 1.18193 1.20525 0.89356 0.99101 1.12277 0.89856 0.93598 0.93660 0.88461 0.88763 0.85863 0.86110 0.85922 0.84350 0.90433 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.33 -7.01 10.48 -19.33 -0.20 -7.21 16 3 C 0.14 3.15 6.67 -39.24 -0.26 2.89 16 4 C -0.32 -6.76 9.02 -39.23 -0.35 -7.11 16 5 C -0.04 -0.79 9.48 -39.34 -0.37 -1.16 16 6 C -0.21 -4.82 5.52 -104.22 -0.58 -5.40 16 7 C 0.03 0.67 4.91 -104.90 -0.52 0.16 16 8 C -0.12 -2.19 9.52 -39.17 -0.37 -2.56 16 9 C -0.11 -1.82 9.81 -39.61 -0.39 -2.21 16 10 C -0.06 -0.98 6.33 -39.37 -0.25 -1.23 16 11 Cl -0.10 -1.42 28.95 -51.86 -1.50 -2.92 16 12 C -0.12 -1.97 9.81 -39.60 -0.39 -2.36 16 13 C -0.09 -1.72 8.01 -39.17 -0.31 -2.04 16 14 C 0.16 3.92 5.55 -106.58 -0.59 3.33 16 15 C -0.45 -10.91 7.11 -37.91 -0.27 -11.18 16 16 H 0.09 2.07 6.65 -52.48 -0.35 1.73 16 17 C 0.08 1.81 5.16 -17.32 -0.09 1.72 16 18 N -0.78 -19.03 10.99 55.55 0.61 -18.42 16 19 Si 0.90 17.85 29.59 -169.99 -5.03 12.82 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 C -0.19 -4.89 8.59 -38.79 -0.33 -5.22 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 27 H 0.10 1.82 6.25 -52.49 -0.33 1.49 16 28 H 0.09 1.76 8.04 -52.48 -0.42 1.33 16 29 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 30 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 31 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.14 2.84 7.33 -52.49 -0.38 2.45 16 33 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 34 H 0.13 3.38 6.25 -52.49 -0.33 3.05 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -25.87 307.03 -9.01 -34.88 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.43 Total: 7.03 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: -4.09 Total: -30.81 kcal Atomic # 7 Polarization: -19.03 SS G_CDS: 0.61 Total: -18.42 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.20 Total: -7.21 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -1.50 Total: -2.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.87 -9.01 -34.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236090702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.384 kcal (2) G-P(sol) polarization free energy of solvation -25.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds