Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35868 * 117.00597 * 2 1 4 4 C 1.39473 * 119.77969 * 0.02562 * 3 2 1 5 5 C 1.37932 * 120.62066 * 179.97438 * 4 3 2 6 6 C 1.39180 * 120.17028 * 359.97438 * 5 4 3 7 7 C 1.47819 * 120.22594 * 180.02562 * 6 5 4 8 8 C 1.39694 * 120.13165 * 309.99499 * 7 6 5 9 9 C 1.37879 * 119.85652 * 179.97438 * 8 7 6 10 10 C 1.38529 * 120.14229 * 0.28495 * 9 8 7 11 11 Cl 1.73595 * 119.86577 * 179.70319 * 10 9 8 12 12 C 1.38534 * 120.27175 * 359.43533 * 10 9 8 13 13 C 1.37881 * 120.14136 * 0.56513 * 12 10 9 14 14 C 1.41912 * 119.55433 * 0.29277 * 6 5 4 15 15 C 1.40876 * 120.30095 * 179.72346 * 14 6 5 16 16 H 1.08005 * 120.00096 * 333.02791 * 15 14 6 17 17 C 1.40042 * 119.99848 * 153.02082 * 15 14 6 18 18 N 1.30782 * 120.00170 * 343.95787 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 163.95697 * 17 15 14 20 20 H 1.48494 * 109.47362 * 90.00218 * 19 17 15 21 21 H 1.48507 * 109.47176 * 210.00199 * 19 17 15 22 22 H 1.48502 * 109.47025 * 329.99597 * 19 17 15 23 23 C 1.37927 * 119.78130 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47528 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46629 * 300.00317 * 1 2 3 26 26 H 1.09005 * 109.46599 * 59.99220 * 1 2 3 27 27 H 1.08001 * 119.69097 * 359.95744 * 4 3 2 28 28 H 1.08007 * 119.91639 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.07004 * 0.02562 * 8 7 6 30 30 H 1.08004 * 119.92837 * 179.97438 * 9 8 7 31 31 H 1.08007 * 119.92885 * 180.25861 * 12 10 9 32 32 H 1.07997 * 120.07176 * 179.74505 * 13 12 10 33 33 H 0.97002 * 120.00421 * 180.02562 * 18 17 15 34 34 H 1.07994 * 120.09199 * 0.03264 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2105 0.0000 4 6 1.2819 2.3774 0.0005 5 6 1.8902 3.6154 0.0011 6 6 3.2786 3.7126 0.0016 7 6 3.9317 5.0387 0.0028 8 6 3.5452 6.0115 -0.9223 9 6 4.1578 7.2467 -0.9158 10 6 5.1587 7.5220 0.0016 11 17 5.9305 9.0769 -0.0017 12 6 5.5424 6.5634 0.9252 13 6 4.9375 5.3243 0.9290 14 6 4.0630 2.5300 -0.0047 15 6 5.4695 2.6101 -0.0101 16 1 5.9596 3.4742 -0.4340 17 6 6.2322 1.5694 0.5343 18 7 5.6688 0.6860 1.3169 19 14 8.0543 1.4430 0.1425 20 1 8.8317 2.2070 1.1510 21 1 8.4696 0.0175 0.1736 22 1 8.3102 2.0037 -1.2086 23 6 3.4236 1.2773 0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 0.2040 2.3110 0.0003 28 1 1.2875 4.5116 0.0019 29 1 2.7676 5.7968 -1.6404 30 1 3.8602 7.9995 -1.6307 31 1 6.3204 6.7854 1.6406 32 1 5.2403 4.5765 1.6468 33 1 6.1971 -0.0347 1.6943 34 1 4.0097 0.3702 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236090702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = -23.530872 kcal Electronic energy + Delta-G solvation = -19623.319692 eV Core-core repulsion = 16510.923722 eV Total energy + Delta-G solvation = -3112.395971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70422 -39.87314 -38.05681 -37.14245 -35.44699 -32.64158 -32.05480 -31.42478 -29.61500 -27.68897 -27.01828 -23.91696 -23.53209 -22.56209 -21.37507 -19.53757 -18.03774 -17.96206 -16.94482 -16.71341 -16.47285 -16.34299 -15.90282 -15.18519 -14.88872 -14.59249 -14.35991 -14.29604 -13.95930 -13.53327 -13.37084 -13.07718 -12.82168 -12.74771 -12.52699 -12.39161 -12.22746 -12.07514 -11.67813 -11.59646 -11.54706 -11.29695 -10.99965 -9.85528 -9.53335 -9.38821 -8.75984 -8.41356 -6.36090 0.18083 0.52816 0.96944 1.17936 1.26096 1.37848 1.47768 1.52971 2.18255 2.67975 2.77936 2.87731 3.68288 4.04997 4.08860 4.17984 4.34013 4.47311 4.50940 4.56146 4.58168 4.65617 4.75233 4.90169 5.06163 5.11568 5.17461 5.30844 5.37789 5.42130 5.52960 5.78045 5.88182 5.92168 6.03317 6.14745 6.18018 6.48201 6.88340 6.91830 7.03746 8.28943 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.005904 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.787399 B = 4741.309630 C = 6617.594197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.130 3.870 4 C -0.314 4.314 5 C -0.042 4.042 6 C -0.218 4.218 7 C 0.006 3.994 8 C -0.120 4.120 9 C -0.106 4.106 10 C -0.058 4.058 11 Cl -0.075 7.075 12 C -0.114 4.114 13 C -0.102 4.102 14 C 0.131 3.869 15 C -0.468 4.468 16 H 0.082 0.918 17 C 0.040 3.960 18 N -0.813 5.813 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.229 4.229 24 H 0.115 0.885 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.115 0.885 33 H 0.289 0.711 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 7.606 -2.081 8.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C 0.085 3.915 4 C -0.334 4.334 5 C -0.060 4.060 6 C -0.219 4.219 7 C 0.006 3.994 8 C -0.138 4.138 9 C -0.124 4.124 10 C -0.084 4.084 11 Cl -0.046 7.046 12 C -0.133 4.133 13 C -0.120 4.120 14 C 0.128 3.872 15 C -0.496 4.496 16 H 0.100 0.900 17 C -0.177 4.177 18 N -0.438 5.438 19 Si 0.789 3.211 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.183 1.183 23 C -0.249 4.249 24 H 0.133 0.867 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.156 0.844 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.917 7.344 -1.924 8.133 hybrid contribution 0.632 -0.393 0.143 0.757 sum -2.285 6.951 -1.782 7.531 Atomic orbital electron populations 1.23153 0.77546 1.04539 1.01572 1.85970 1.22851 1.28416 1.89436 1.19138 0.92171 0.83971 0.96192 1.20705 0.98886 0.91750 1.22037 1.20708 0.92999 0.96508 0.95744 1.18838 0.92929 0.91532 1.18625 1.18929 0.94290 0.92457 0.93740 1.21390 1.01185 0.92524 0.98751 1.21080 0.95354 0.97428 0.98545 1.20940 0.99194 0.87697 1.00606 1.98323 1.80687 1.27379 1.98239 1.21046 1.00841 0.92305 0.99095 1.21283 0.96187 0.95644 0.98906 1.17532 0.93515 0.89669 0.86444 1.19651 0.91289 1.04333 1.34367 0.89988 1.26710 1.05276 0.93563 0.92124 1.69876 1.40288 1.12082 1.21584 0.85395 0.76843 0.78689 0.80145 1.18317 1.19298 1.18321 1.20465 0.90593 0.98539 1.15321 0.86689 0.92725 0.92297 0.85397 0.85752 0.84407 0.83018 0.84246 0.86728 0.90056 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.80 113.37 1.11 1.88 16 2 O -0.35 -15.09 10.48 -92.06 -0.97 -16.06 16 3 C 0.13 6.16 6.67 22.49 0.15 6.31 16 4 C -0.31 -13.13 9.02 22.50 0.20 -12.92 16 5 C -0.04 -1.72 9.48 22.42 0.21 -1.51 16 6 C -0.22 -10.00 5.52 -19.61 -0.11 -10.10 16 7 C 0.01 0.24 4.91 -20.04 -0.10 0.14 16 8 C -0.12 -4.00 9.52 22.54 0.21 -3.79 16 9 C -0.11 -3.06 9.81 22.25 0.22 -2.84 16 10 C -0.06 -1.74 6.33 22.41 0.14 -1.60 16 11 Cl -0.08 -1.91 28.95 -2.72 -0.08 -1.99 16 12 C -0.11 -3.76 9.81 22.26 0.22 -3.55 16 13 C -0.10 -3.99 8.01 22.53 0.18 -3.81 16 14 C 0.13 6.83 5.55 -21.13 -0.12 6.72 16 15 C -0.47 -23.98 7.11 23.35 0.17 -23.82 16 16 H 0.08 4.12 6.65 -2.91 -0.02 4.10 16 17 C 0.04 1.97 5.16 85.29 0.44 2.41 16 18 N -0.81 -42.11 10.99 21.84 0.24 -41.87 16 19 Si 0.97 37.71 29.59 68.60 2.03 39.74 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 21 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 C -0.23 -12.25 8.59 22.79 0.20 -12.05 16 24 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.05 1.49 7.65 -2.39 -0.02 1.48 16 26 H 0.06 1.55 7.65 -2.38 -0.02 1.54 16 27 H 0.13 4.45 6.25 -2.91 -0.02 4.43 16 28 H 0.12 4.32 8.04 -2.91 -0.02 4.30 16 29 H 0.14 4.12 8.04 -2.91 -0.02 4.10 16 30 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.11 4.97 7.33 -2.91 -0.02 4.95 16 33 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 34 H 0.10 5.75 6.25 -2.91 -0.02 5.73 16 Total: -1.00 -58.35 307.03 5.48 -52.87 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.13 Total: 25.84 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 3.13 Total: -58.53 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.24 Total: -41.87 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.97 Total: -16.06 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -58.35 5.48 -52.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236090702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.337 kcal (2) G-P(sol) polarization free energy of solvation -58.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds