Wall clock time and date at job start Tue Mar 31 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38378 * 119.92252 * 2 1 4 4 C 1.38269 * 120.27507 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.94301 * 179.97438 * 4 3 2 6 6 C 1.38167 * 120.11425 * 359.68174 * 4 3 2 7 7 Cl 1.73599 * 120.08425 * 180.29735 * 6 4 3 8 8 C 1.39493 * 119.83452 * 0.61819 * 6 4 3 9 9 C 1.48273 * 120.13212 * 179.67569 * 8 6 4 10 10 C 1.40051 * 119.98870 * 179.70236 * 9 8 6 11 11 N 1.32169 * 120.29707 * 180.02562 * 10 9 8 12 12 C 1.31889 * 120.28239 * 359.77565 * 11 10 9 13 13 C 1.40818 * 119.96749 * 0.47551 * 12 11 10 14 14 C 1.41330 * 120.14505 * 179.77581 * 13 12 11 15 15 H 1.07997 * 120.00122 * 204.97029 * 14 13 12 16 16 C 1.40045 * 119.99937 * 24.97245 * 14 13 12 17 17 N 1.30732 * 120.00248 * 17.49761 * 16 14 13 18 18 Si 1.86803 * 119.99994 * 197.49959 * 16 14 13 19 19 H 1.48501 * 109.47266 * 265.18223 * 18 16 14 20 20 H 1.48496 * 109.47179 * 25.18634 * 18 16 14 21 21 H 1.48506 * 109.47126 * 145.18435 * 18 16 14 22 22 N 1.32528 * 119.98822 * 359.72780 * 9 8 6 23 23 C 1.37970 * 119.92399 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47166 * 269.97528 * 1 2 3 25 25 H 1.09001 * 109.47456 * 29.97603 * 1 2 3 26 26 H 1.09004 * 109.46950 * 149.97638 * 1 2 3 27 27 H 1.08005 * 119.86273 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.46642 * 90.00635 * 5 4 3 29 29 H 1.09008 * 109.46878 * 210.00190 * 5 4 3 30 30 H 1.08996 * 109.47404 * 330.00207 * 5 4 3 31 31 H 1.08004 * 119.85257 * 0.02562 * 10 9 8 32 32 H 1.08000 * 120.02108 * 180.26041 * 12 11 10 33 33 H 0.96998 * 120.00174 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.05880 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1993 0.0000 4 6 3.5799 1.2078 -0.0005 5 6 4.3241 2.5183 -0.0011 6 6 4.2804 0.0170 0.0056 7 17 6.0164 0.0286 0.0127 8 6 3.5894 -1.1948 -0.0008 9 6 4.3346 -2.4766 -0.0016 10 6 3.6377 -3.6914 -0.0016 11 7 4.2958 -4.8376 -0.0018 12 6 5.6147 -4.8473 -0.0064 13 6 6.3270 -3.6326 -0.0010 14 6 7.7403 -3.6386 -0.0010 15 1 8.2839 -2.7948 0.3976 16 6 8.4358 -4.7387 -0.5180 17 7 7.8239 -5.5915 -1.2973 18 14 10.2380 -4.9876 -0.0940 19 1 11.0840 -4.3958 -1.1614 20 1 10.5382 -4.3244 1.2003 21 1 10.5246 -6.4405 0.0162 22 7 5.6599 -2.4724 -0.0017 23 6 2.1952 -1.1958 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6537 2.1326 0.0004 28 1 4.5039 2.8344 1.0264 29 1 5.2772 2.3946 -0.5154 30 1 3.7294 3.2737 -0.5148 31 1 2.5577 -3.6917 -0.0016 32 1 6.1482 -5.7863 -0.0107 33 1 8.3058 -6.3532 -1.6557 34 1 1.6550 -2.1309 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236546526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:02 Heat of formation + Delta-G solvation = 46.348684 kcal Electronic energy + Delta-G solvation = -19632.736171 eV Core-core repulsion = 16555.663157 eV Total energy + Delta-G solvation = -3077.073015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66204 -38.59778 -35.72279 -34.27926 -33.24130 -33.05095 -31.81598 -29.18353 -27.22811 -26.65380 -25.84011 -23.55822 -22.16763 -20.56436 -20.24968 -17.56849 -16.46110 -16.29244 -15.33775 -15.09836 -14.87846 -14.57706 -14.19296 -13.51334 -13.22400 -13.12275 -13.06583 -12.96625 -12.57226 -11.97063 -11.90958 -11.71925 -11.48937 -11.28661 -11.21440 -10.95483 -10.87504 -10.60580 -10.48746 -10.40347 -9.79470 -9.44989 -9.23019 -8.64367 -8.13558 -7.43649 -7.20788 -7.05195 -4.70379 1.19352 1.47950 2.52744 2.87467 2.91268 2.98761 3.03484 3.10222 3.78027 3.94181 4.48639 4.83183 4.87071 4.94526 5.33992 5.36468 5.55333 5.58124 5.60531 5.67516 5.71909 5.78840 5.91403 5.93569 6.07628 6.18609 6.28544 6.37539 6.57873 6.65136 6.75978 6.91926 6.97845 7.11816 7.23834 7.59705 8.14370 8.41670 8.49717 9.13379 9.61802 9.93883 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.005178 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.135887 B = 5406.387451 C = 6534.332278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.090 4.090 3 C -0.118 4.118 4 C -0.087 4.087 5 C -0.115 4.115 6 C -0.020 4.020 7 Cl -0.022 7.022 8 C -0.003 4.003 9 C 0.119 3.881 10 C -0.083 4.083 11 N -0.445 5.445 12 C 0.014 3.986 13 C 0.225 3.775 14 C -0.419 4.419 15 H 0.090 0.910 16 C 0.075 3.925 17 N -0.784 5.784 18 Si 0.922 3.078 19 H -0.268 1.268 20 H -0.257 1.257 21 H -0.272 1.272 22 N -0.491 5.491 23 C -0.104 4.104 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.288 0.712 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.087 10.160 1.707 12.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.090 4.090 3 C -0.136 4.136 4 C -0.087 4.087 5 C -0.171 4.171 6 C -0.048 4.048 7 Cl 0.008 6.992 8 C -0.005 4.005 9 C -0.024 4.024 10 C -0.240 4.240 11 N -0.156 5.156 12 C -0.157 4.157 13 C 0.096 3.904 14 C -0.452 4.452 15 H 0.108 0.892 16 C -0.146 4.146 17 N -0.410 5.410 18 Si 0.745 3.255 19 H -0.193 1.193 20 H -0.181 1.181 21 H -0.197 1.197 22 N -0.210 5.210 23 C -0.123 4.123 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.176 0.824 33 H 0.100 0.900 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.915 9.953 1.568 12.221 hybrid contribution 0.863 -0.296 -0.029 0.913 sum -6.052 9.657 1.539 11.500 Atomic orbital electron populations 1.20744 0.91036 1.02652 1.02192 1.19773 0.96028 0.92779 1.00417 1.20769 0.92579 0.97542 1.02742 1.19681 0.93683 0.94164 1.01218 1.20818 1.00467 0.93295 1.02531 1.21004 0.86959 0.93145 1.03659 1.98394 1.06613 1.98254 1.95966 1.18611 0.92314 0.91059 0.98556 1.20280 0.92024 0.91410 0.98667 1.22596 0.98911 0.88605 1.13862 1.67914 1.10290 1.28803 1.08624 1.23883 0.88847 1.00171 1.02749 1.19428 0.94903 0.87552 0.88545 1.19313 0.89619 1.02509 1.33798 0.89223 1.26023 1.01956 0.94331 0.92251 1.69725 1.39391 1.11063 1.20792 0.86065 0.80479 0.78582 0.80367 1.19256 1.18059 1.19679 1.69579 1.05234 1.28535 1.17610 1.21063 0.92386 0.98054 1.00827 0.91280 0.91717 0.91456 0.85831 0.91060 0.90851 0.91582 0.85301 0.82397 0.90046 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 2 C -0.09 -1.22 5.87 -104.67 -0.61 -1.84 16 3 C -0.12 -1.57 9.34 -39.52 -0.37 -1.94 16 4 C -0.09 -1.32 5.88 -104.63 -0.62 -1.94 16 5 C -0.11 -1.40 9.61 36.01 0.35 -1.05 16 6 C -0.02 -0.37 6.34 -39.14 -0.25 -0.62 16 7 Cl -0.02 -0.44 24.03 -51.86 -1.25 -1.69 16 8 C 0.00 -0.06 5.88 -104.86 -0.62 -0.68 16 9 C 0.12 2.84 6.73 -82.76 -0.56 2.28 16 10 C -0.08 -1.95 10.62 -16.73 -0.18 -2.13 16 11 N -0.44 -11.44 10.47 -12.05 -0.13 -11.57 16 12 C 0.01 0.38 9.88 -16.55 -0.16 0.22 16 13 C 0.22 6.09 6.41 -84.84 -0.54 5.55 16 14 C -0.42 -10.93 9.29 -37.73 -0.35 -11.28 16 15 H 0.09 2.30 7.91 -52.49 -0.41 1.89 16 16 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 17 N -0.78 -19.37 10.96 55.55 0.61 -18.76 16 18 Si 0.92 17.84 29.59 -169.99 -5.03 12.81 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 22 N -0.49 -12.73 6.97 -7.51 -0.05 -12.78 16 23 C -0.10 -1.71 9.08 -39.24 -0.36 -2.06 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.07 0.62 8.08 -51.93 -0.42 0.21 16 27 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.95 6.91 -51.92 -0.36 0.59 16 30 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.13 2.58 6.19 -52.48 -0.32 2.26 16 32 H 0.16 4.22 6.17 -52.49 -0.32 3.89 16 33 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 34 H 0.13 1.97 6.19 -52.49 -0.33 1.65 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -28.92 303.66 -8.67 -37.59 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.41 Total: 4.30 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.99 Total: -14.49 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.43 Total: -43.11 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.25 Total: -1.69 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.92 -8.67 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236546526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.939 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds