Wall clock time and date at job start Tue Mar 31 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38378 * 119.92252 * 2 1 4 4 C 1.38269 * 120.27507 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.94301 * 179.97438 * 4 3 2 6 6 C 1.38167 * 120.11425 * 359.68174 * 4 3 2 7 7 Cl 1.73599 * 120.08425 * 180.29735 * 6 4 3 8 8 C 1.39493 * 119.83452 * 0.61819 * 6 4 3 9 9 C 1.48273 * 120.13212 * 179.67569 * 8 6 4 10 10 C 1.40051 * 119.98870 * 179.70236 * 9 8 6 11 11 N 1.32169 * 120.29707 * 180.02562 * 10 9 8 12 12 C 1.31889 * 120.28239 * 359.77565 * 11 10 9 13 13 C 1.40818 * 119.96749 * 0.47551 * 12 11 10 14 14 C 1.41330 * 120.14505 * 179.77581 * 13 12 11 15 15 H 1.07997 * 120.00122 * 204.97029 * 14 13 12 16 16 C 1.40045 * 119.99937 * 24.97245 * 14 13 12 17 17 N 1.30732 * 120.00248 * 17.49761 * 16 14 13 18 18 Si 1.86803 * 119.99994 * 197.49959 * 16 14 13 19 19 H 1.48501 * 109.47266 * 265.18223 * 18 16 14 20 20 H 1.48496 * 109.47179 * 25.18634 * 18 16 14 21 21 H 1.48506 * 109.47126 * 145.18435 * 18 16 14 22 22 N 1.32528 * 119.98822 * 359.72780 * 9 8 6 23 23 C 1.37970 * 119.92399 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47166 * 269.97528 * 1 2 3 25 25 H 1.09001 * 109.47456 * 29.97603 * 1 2 3 26 26 H 1.09004 * 109.46950 * 149.97638 * 1 2 3 27 27 H 1.08005 * 119.86273 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.46642 * 90.00635 * 5 4 3 29 29 H 1.09008 * 109.46878 * 210.00190 * 5 4 3 30 30 H 1.08996 * 109.47404 * 330.00207 * 5 4 3 31 31 H 1.08004 * 119.85257 * 0.02562 * 10 9 8 32 32 H 1.08000 * 120.02108 * 180.26041 * 12 11 10 33 33 H 0.96998 * 120.00174 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.05880 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1993 0.0000 4 6 3.5799 1.2078 -0.0005 5 6 4.3241 2.5183 -0.0011 6 6 4.2804 0.0170 0.0056 7 17 6.0164 0.0286 0.0127 8 6 3.5894 -1.1948 -0.0008 9 6 4.3346 -2.4766 -0.0016 10 6 3.6377 -3.6914 -0.0016 11 7 4.2958 -4.8376 -0.0018 12 6 5.6147 -4.8473 -0.0064 13 6 6.3270 -3.6326 -0.0010 14 6 7.7403 -3.6386 -0.0010 15 1 8.2839 -2.7948 0.3976 16 6 8.4358 -4.7387 -0.5180 17 7 7.8239 -5.5915 -1.2973 18 14 10.2380 -4.9876 -0.0940 19 1 11.0840 -4.3958 -1.1614 20 1 10.5382 -4.3244 1.2003 21 1 10.5246 -6.4405 0.0162 22 7 5.6599 -2.4724 -0.0017 23 6 2.1952 -1.1958 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6537 2.1326 0.0004 28 1 4.5039 2.8344 1.0264 29 1 5.2772 2.3946 -0.5154 30 1 3.7294 3.2737 -0.5148 31 1 2.5577 -3.6917 -0.0016 32 1 6.1482 -5.7863 -0.0107 33 1 8.3058 -6.3532 -1.6557 34 1 1.6550 -2.1309 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236546526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:01 Heat of formation + Delta-G solvation = 30.637027 kcal Electronic energy + Delta-G solvation = -19633.417480 eV Core-core repulsion = 16555.663157 eV Total energy + Delta-G solvation = -3077.754323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24927 -40.12837 -37.13855 -36.12053 -34.84538 -34.28782 -33.46367 -30.84019 -28.49472 -27.94758 -27.30351 -25.21729 -23.98093 -22.11969 -21.44880 -19.39877 -18.04724 -17.82519 -16.99653 -16.86426 -16.31166 -16.10876 -15.47404 -14.89716 -14.79418 -14.40166 -14.33478 -14.02297 -13.58475 -13.43806 -13.23263 -13.12115 -13.03400 -12.83164 -12.73341 -12.43575 -12.24483 -12.00748 -11.97821 -11.93142 -11.65004 -11.17134 -10.96687 -10.24808 -9.39064 -9.17520 -9.02337 -8.88535 -6.67554 -0.25979 0.26844 0.73958 1.12804 1.37506 1.47593 1.51958 1.55334 2.15153 2.51756 2.75687 3.38871 3.71127 3.74576 3.87062 3.98577 4.27557 4.30248 4.42324 4.43399 4.61390 4.64703 4.76925 4.80067 4.93350 4.96633 4.98942 5.06901 5.15887 5.25139 5.32442 5.40869 5.48420 5.58729 5.69070 5.94517 6.15427 6.50284 6.55544 7.18738 7.68152 8.13750 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.005178 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.135887 B = 5406.387451 C = 6534.332278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.080 4.080 3 C -0.102 4.102 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.044 4.044 7 Cl -0.050 7.050 8 C -0.044 4.044 9 C 0.119 3.881 10 C -0.095 4.095 11 N -0.453 5.453 12 C -0.021 4.021 13 C 0.199 3.801 14 C -0.447 4.447 15 H 0.082 0.918 16 C 0.040 3.960 17 N -0.810 5.810 18 Si 0.998 3.002 19 H -0.260 1.260 20 H -0.257 1.257 21 H -0.256 1.256 22 N -0.506 5.506 23 C -0.107 4.107 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.168 0.832 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.300 0.700 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 12.272 1.786 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.089 4.089 5 C -0.170 4.170 6 C -0.072 4.072 7 Cl -0.020 7.020 8 C -0.047 4.047 9 C -0.026 4.026 10 C -0.252 4.252 11 N -0.165 5.165 12 C -0.190 4.190 13 C 0.071 3.929 14 C -0.480 4.480 15 H 0.100 0.900 16 C -0.178 4.178 17 N -0.436 5.436 18 Si 0.817 3.183 19 H -0.184 1.184 20 H -0.181 1.181 21 H -0.180 1.180 22 N -0.225 5.225 23 C -0.126 4.126 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.186 0.814 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.180 0.820 32 H 0.166 0.834 33 H 0.111 0.889 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.692 12.044 1.639 14.943 hybrid contribution 1.171 -0.772 -0.080 1.405 sum -7.521 11.272 1.559 13.640 Atomic orbital electron populations 1.20848 0.87728 1.04237 1.03640 1.20253 0.98249 0.91695 0.97868 1.21322 0.91733 0.99279 0.99670 1.20088 0.94805 0.93966 1.00041 1.20887 1.00091 0.92481 1.03528 1.21270 0.85822 0.94395 1.05672 1.98375 1.09064 1.98326 1.96264 1.18668 0.93767 0.89690 1.02537 1.20958 0.91647 0.93585 0.96381 1.23131 1.00427 0.88084 1.13586 1.67854 1.10010 1.30084 1.08573 1.23673 0.89377 0.99787 1.06123 1.19762 0.95767 0.88170 0.89215 1.19533 0.89681 1.03647 1.35161 0.89978 1.26938 1.06532 0.93130 0.91232 1.69755 1.41523 1.11462 1.20835 0.84956 0.74213 0.79189 0.79968 1.18440 1.18095 1.18025 1.69661 1.06525 1.28051 1.18258 1.21265 0.90883 0.99951 1.00527 0.89705 0.89277 0.90876 0.81447 0.89933 0.92198 0.88376 0.81970 0.83386 0.88882 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.23 0.71 -0.87 16 2 C -0.08 -1.88 5.87 -19.90 -0.12 -2.00 16 3 C -0.10 -2.26 9.34 22.31 0.21 -2.05 16 4 C -0.09 -2.48 5.88 -19.87 -0.12 -2.59 16 5 C -0.11 -2.46 9.61 71.24 0.68 -1.78 16 6 C -0.04 -1.65 6.34 22.56 0.14 -1.50 16 7 Cl -0.05 -2.07 24.03 -2.72 -0.07 -2.14 16 8 C -0.04 -1.78 5.88 -20.02 -0.12 -1.90 16 9 C 0.12 5.83 6.73 42.15 0.28 6.11 16 10 C -0.09 -4.55 10.62 85.08 0.90 -3.65 16 11 N -0.45 -24.25 10.47 -192.04 -2.01 -26.26 16 12 C -0.02 -1.18 9.88 85.32 0.84 -0.34 16 13 C 0.20 11.39 6.41 40.23 0.26 11.65 16 14 C -0.45 -24.56 9.29 23.47 0.22 -24.34 16 15 H 0.08 4.47 7.91 -2.91 -0.02 4.44 16 16 C 0.04 1.99 5.14 85.29 0.44 2.43 16 17 N -0.81 -41.32 10.96 21.84 0.24 -41.08 16 18 Si 1.00 37.00 29.59 68.60 2.03 39.03 16 19 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 22 N -0.51 -27.56 6.97 -177.66 -1.24 -28.80 16 23 C -0.11 -3.32 9.08 22.49 0.20 -3.11 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.48 6.91 -2.38 -0.02 1.46 16 30 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.16 6.45 6.19 -2.91 -0.02 6.43 16 32 H 0.15 8.43 6.17 -2.91 -0.02 8.42 16 33 H 0.30 13.51 8.29 -92.71 -0.77 12.74 16 34 H 0.14 3.96 6.19 -2.91 -0.02 3.94 16 Total: -1.00 -67.54 303.66 4.64 -62.90 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.14 Total: 20.29 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 4.55 Total: -23.94 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -3.01 Total: -96.14 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.07 Total: -2.14 kcal Total: -67.54 4.64 -62.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236546526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.535 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds