Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38449 * 119.91169 * 2 1 4 4 C 1.38333 * 120.31996 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.93636 * 180.02562 * 4 3 2 6 6 C 1.38088 * 120.13554 * 359.78943 * 4 3 2 7 7 Cl 1.73601 * 120.09370 * 180.22648 * 6 4 3 8 8 C 1.39773 * 119.81441 * 0.48874 * 6 4 3 9 9 C 1.47896 * 120.15547 * 179.76381 * 8 6 4 10 10 C 1.40441 * 120.79678 * 309.72692 * 9 8 6 11 11 N 1.31579 * 119.09363 * 179.97438 * 10 9 8 12 12 C 1.33652 * 120.83329 * 359.97438 * 11 10 9 13 13 C 1.41068 * 119.13137 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00615 * 0.02562 * 13 12 11 15 15 C 1.40145 * 119.99822 * 180.02562 * 13 12 11 16 16 N 1.30655 * 119.99972 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99827 * 179.72754 * 15 13 12 18 18 H 1.48498 * 109.47200 * 59.99878 * 17 15 13 19 19 H 1.48498 * 109.46671 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47156 * 299.99893 * 17 15 13 21 21 N 1.33654 * 121.73494 * 0.26475 * 12 11 10 22 22 C 1.31583 * 120.83047 * 359.46727 * 21 12 11 23 23 C 1.37887 * 119.90823 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47012 * 269.97484 * 1 2 3 25 25 H 1.09002 * 109.47158 * 29.97529 * 1 2 3 26 26 H 1.09002 * 109.47050 * 149.97824 * 1 2 3 27 27 H 1.08002 * 119.83866 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46864 * 89.99750 * 5 4 3 29 29 H 1.08996 * 109.47187 * 210.00330 * 5 4 3 30 30 H 1.09000 * 109.46600 * 330.00589 * 5 4 3 31 31 H 1.08005 * 120.45540 * 359.97438 * 10 9 8 32 32 H 0.97000 * 120.00273 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.45440 * 180.26103 * 22 21 12 34 34 H 1.08000 * 120.07045 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.2001 0.0000 4 6 3.5807 1.2099 0.0005 5 6 4.3235 2.5212 0.0011 6 6 4.2825 0.0207 0.0055 7 17 6.0184 0.0343 0.0121 8 6 3.5912 -1.1942 -0.0004 9 6 4.3353 -2.4723 -0.0005 10 6 5.3672 -2.7036 -0.9246 11 7 6.0075 -3.8527 -0.8943 12 6 5.6869 -4.7922 0.0006 13 6 6.3965 -6.0114 0.0005 14 1 7.1876 -6.1758 -0.7162 15 6 6.0751 -7.0093 0.9305 16 7 5.1178 -6.8106 1.7972 17 14 7.0097 -8.6267 0.9255 18 1 8.4521 -8.3657 1.1635 19 1 6.4825 -9.5062 1.9996 20 1 6.8379 -9.2936 -0.3901 21 7 4.7078 -4.6092 0.8918 22 6 4.0276 -3.4833 0.9247 23 6 2.1946 -1.1952 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6534 2.1330 0.0004 28 1 4.5021 2.8371 1.0289 29 1 5.2771 2.3989 -0.5124 30 1 3.7282 3.2761 -0.5127 31 1 5.6317 -1.9485 -1.6502 32 1 4.8950 -7.5014 2.4407 33 1 3.2405 -3.3404 1.6502 34 1 1.6542 -2.1303 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236548753.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = 45.079362 kcal Electronic energy + Delta-G solvation = -19438.591153 eV Core-core repulsion = 16361.463096 eV Total energy + Delta-G solvation = -3077.128057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.51870 -38.51656 -36.03967 -34.11452 -33.20314 -32.61965 -31.80464 -29.43112 -27.27833 -26.37257 -26.10958 -22.80391 -22.61534 -20.38772 -20.32346 -17.95105 -16.41649 -16.18303 -15.54932 -15.04680 -14.76613 -14.45776 -14.02174 -13.33960 -13.21344 -13.05482 -12.93144 -12.80741 -12.55350 -12.18270 -11.99778 -11.90458 -11.42029 -11.34356 -11.31951 -11.13148 -10.80693 -10.74884 -10.39505 -10.23214 -9.57260 -9.18006 -9.17745 -8.72115 -8.19268 -7.65954 -7.30333 -6.64267 -4.81832 1.42672 1.52928 2.55501 2.66545 2.97763 2.99077 3.02033 3.06839 3.79421 3.92314 4.54572 4.87537 5.02583 5.10514 5.38469 5.41727 5.62327 5.66603 5.69106 5.77929 5.80264 5.85238 5.87140 5.90442 5.92898 6.18330 6.27221 6.37731 6.56964 6.63298 6.78475 6.86637 7.00541 7.17216 7.26878 7.57701 8.04847 8.39118 8.46929 9.03198 9.99867 10.18950 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.004386 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.236163 B = 6382.527057 C = 7202.263622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.071 4.071 5 C -0.115 4.115 6 C -0.054 4.054 7 Cl -0.070 7.070 8 C 0.047 3.953 9 C -0.338 4.338 10 C 0.202 3.798 11 N -0.594 5.594 12 C 0.384 3.616 13 C -0.382 4.382 14 H 0.095 0.905 15 C 0.062 3.938 16 N -0.700 5.700 17 Si 0.921 3.079 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.261 1.261 21 N -0.509 5.509 22 C 0.186 3.814 23 C -0.124 4.124 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.279 0.721 33 H 0.128 0.872 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 11.482 -0.886 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.158 4.158 4 C -0.072 4.072 5 C -0.172 4.172 6 C -0.081 4.081 7 Cl -0.041 7.041 8 C 0.044 3.956 9 C -0.348 4.348 10 C 0.027 3.973 11 N -0.312 5.312 12 C 0.151 3.849 13 C -0.416 4.416 14 H 0.113 0.887 15 C -0.166 4.166 16 N -0.320 5.320 17 Si 0.745 3.255 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.186 1.186 21 N -0.225 5.225 22 C 0.009 3.991 23 C -0.143 4.143 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.324 10.320 -0.689 11.632 hybrid contribution -0.053 0.262 0.116 0.292 sum -5.377 10.582 -0.573 11.883 Atomic orbital electron populations 1.20766 0.91355 1.02526 1.02160 1.19829 0.95862 0.93004 0.98970 1.20658 0.92411 0.97405 1.05335 1.19568 0.93635 0.93871 1.00131 1.20820 1.00343 0.93558 1.02457 1.20979 0.84218 0.93916 1.08997 1.98331 1.10269 1.98595 1.96903 1.18571 0.92135 0.91224 0.93666 1.19596 1.08665 0.96997 1.09537 1.22610 0.88227 0.93265 0.93215 1.68666 1.31562 1.03012 1.27952 1.19940 0.88409 0.91918 0.84617 1.19427 1.14025 0.95373 1.12759 0.88691 1.26201 0.95085 1.00880 0.94427 1.70110 1.19825 1.32339 1.09730 0.86148 0.80429 0.79790 0.79178 1.18584 1.19951 1.18569 1.69353 1.08961 1.19625 1.24514 1.22967 0.94837 0.88256 0.93004 1.21127 0.92680 0.97541 1.02903 0.91284 0.91829 0.91526 0.86136 0.91135 0.91031 0.91626 0.85433 0.90996 0.85442 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.08 -1.05 5.87 -104.67 -0.61 -1.66 16 3 C -0.14 -1.84 9.35 -39.47 -0.37 -2.21 16 4 C -0.07 -1.03 5.88 -104.64 -0.62 -1.65 16 5 C -0.12 -1.32 9.61 36.01 0.35 -0.98 16 6 C -0.05 -0.93 6.30 -39.06 -0.25 -1.18 16 7 Cl -0.07 -1.22 24.42 -51.86 -1.27 -2.49 16 8 C 0.05 0.87 5.52 -104.84 -0.58 0.29 16 9 C -0.34 -7.46 5.14 -104.28 -0.54 -8.00 16 10 C 0.20 4.73 9.51 -16.83 -0.16 4.57 16 11 N -0.59 -15.79 10.34 -12.41 -0.13 -15.92 16 12 C 0.38 10.75 7.35 -158.16 -1.16 9.59 16 13 C -0.38 -10.30 9.35 -37.79 -0.35 -10.65 16 14 H 0.10 2.45 7.85 -52.49 -0.41 2.03 16 15 C 0.06 1.54 5.50 -17.34 -0.10 1.45 16 16 N -0.70 -17.92 11.40 55.56 0.63 -17.29 16 17 Si 0.92 18.01 29.56 -169.99 -5.02 12.99 16 18 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 21 N -0.51 -13.87 7.83 -12.41 -0.10 -13.97 16 22 C 0.19 4.43 10.85 -16.82 -0.18 4.24 16 23 C -0.12 -2.02 9.20 -39.18 -0.36 -2.38 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.84 6.91 -51.93 -0.36 0.49 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.13 2.72 7.26 -52.48 -0.38 2.34 16 32 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 33 H 0.13 2.70 8.06 -52.49 -0.42 2.28 16 34 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -29.26 309.32 -9.45 -38.71 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.66 Total: 2.65 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -4.57 Total: -9.35 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.41 Total: -47.17 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.99 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.27 Total: -2.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.26 -9.45 -38.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236548753.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.786 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds