Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38449 * 119.91169 * 2 1 4 4 C 1.38333 * 120.31996 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.93636 * 180.02562 * 4 3 2 6 6 C 1.38088 * 120.13554 * 359.78943 * 4 3 2 7 7 Cl 1.73601 * 120.09370 * 180.22648 * 6 4 3 8 8 C 1.39773 * 119.81441 * 0.48874 * 6 4 3 9 9 C 1.47896 * 120.15547 * 179.76381 * 8 6 4 10 10 C 1.40441 * 120.79678 * 309.72692 * 9 8 6 11 11 N 1.31579 * 119.09363 * 179.97438 * 10 9 8 12 12 C 1.33652 * 120.83329 * 359.97438 * 11 10 9 13 13 C 1.41068 * 119.13137 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00615 * 0.02562 * 13 12 11 15 15 C 1.40145 * 119.99822 * 180.02562 * 13 12 11 16 16 N 1.30655 * 119.99972 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99827 * 179.72754 * 15 13 12 18 18 H 1.48498 * 109.47200 * 59.99878 * 17 15 13 19 19 H 1.48498 * 109.46671 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47156 * 299.99893 * 17 15 13 21 21 N 1.33654 * 121.73494 * 0.26475 * 12 11 10 22 22 C 1.31583 * 120.83047 * 359.46727 * 21 12 11 23 23 C 1.37887 * 119.90823 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47012 * 269.97484 * 1 2 3 25 25 H 1.09002 * 109.47158 * 29.97529 * 1 2 3 26 26 H 1.09002 * 109.47050 * 149.97824 * 1 2 3 27 27 H 1.08002 * 119.83866 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46864 * 89.99750 * 5 4 3 29 29 H 1.08996 * 109.47187 * 210.00330 * 5 4 3 30 30 H 1.09000 * 109.46600 * 330.00589 * 5 4 3 31 31 H 1.08005 * 120.45540 * 359.97438 * 10 9 8 32 32 H 0.97000 * 120.00273 * 179.97438 * 16 15 13 33 33 H 1.07997 * 120.45440 * 180.26103 * 22 21 12 34 34 H 1.08000 * 120.07045 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.2001 0.0000 4 6 3.5807 1.2099 0.0005 5 6 4.3235 2.5212 0.0011 6 6 4.2825 0.0207 0.0055 7 17 6.0184 0.0343 0.0121 8 6 3.5912 -1.1942 -0.0004 9 6 4.3353 -2.4723 -0.0005 10 6 5.3672 -2.7036 -0.9246 11 7 6.0075 -3.8527 -0.8943 12 6 5.6869 -4.7922 0.0006 13 6 6.3965 -6.0114 0.0005 14 1 7.1876 -6.1758 -0.7162 15 6 6.0751 -7.0093 0.9305 16 7 5.1178 -6.8106 1.7972 17 14 7.0097 -8.6267 0.9255 18 1 8.4521 -8.3657 1.1635 19 1 6.4825 -9.5062 1.9996 20 1 6.8379 -9.2936 -0.3901 21 7 4.7078 -4.6092 0.8918 22 6 4.0276 -3.4833 0.9247 23 6 2.1946 -1.1952 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6534 2.1330 0.0004 28 1 4.5021 2.8371 1.0289 29 1 5.2771 2.3989 -0.5124 30 1 3.7282 3.2761 -0.5127 31 1 5.6317 -1.9485 -1.6502 32 1 4.8950 -7.5014 2.4407 33 1 3.2405 -3.3404 1.6502 34 1 1.6542 -2.1303 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236548753.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = 30.088831 kcal Electronic energy + Delta-G solvation = -19439.241191 eV Core-core repulsion = 16361.463096 eV Total energy + Delta-G solvation = -3077.778095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08804 -40.07353 -37.35979 -35.91007 -34.39067 -34.04504 -33.72678 -31.08881 -28.46460 -27.72298 -27.45468 -24.64788 -24.33012 -21.83720 -21.52025 -19.84199 -18.01946 -17.64668 -17.12802 -16.61108 -16.27594 -16.02047 -15.11768 -14.84250 -14.54434 -14.48707 -14.23630 -14.03865 -13.98773 -13.47873 -13.23478 -13.08130 -12.96010 -12.81174 -12.74028 -12.48203 -12.27018 -12.00858 -11.94481 -11.60975 -11.30821 -11.14235 -10.99109 -10.23329 -9.46374 -9.38571 -9.05118 -8.48675 -6.77723 0.06477 0.31691 0.84888 1.04754 1.35158 1.38806 1.52505 1.53172 2.17541 2.62297 2.77557 3.78846 3.85072 3.88253 3.92462 3.98861 4.02182 4.30894 4.39472 4.42717 4.64876 4.70621 4.76507 4.81298 4.90412 4.93329 5.04402 5.07318 5.18970 5.28441 5.33265 5.45726 5.55282 5.65895 5.76933 6.01538 6.08559 6.45891 6.54730 7.11471 8.15167 8.29502 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.004386 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.236163 B = 6382.527057 C = 7202.263622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 C -0.125 4.125 4 C -0.072 4.072 5 C -0.114 4.114 6 C -0.068 4.068 7 Cl -0.082 7.082 8 C 0.011 3.989 9 C -0.313 4.313 10 C 0.189 3.811 11 N -0.620 5.620 12 C 0.357 3.643 13 C -0.424 4.424 14 H 0.092 0.908 15 C 0.023 3.977 16 N -0.737 5.737 17 Si 1.002 2.998 18 H -0.258 1.258 19 H -0.260 1.260 20 H -0.257 1.257 21 N -0.537 5.537 22 C 0.168 3.832 23 C -0.132 4.132 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.161 0.839 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.288 0.712 33 H 0.148 0.852 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.647 13.479 -0.759 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.143 4.143 4 C -0.073 4.073 5 C -0.171 4.171 6 C -0.095 4.095 7 Cl -0.053 7.053 8 C 0.008 3.992 9 C -0.323 4.323 10 C 0.016 3.984 11 N -0.339 5.339 12 C 0.122 3.878 13 C -0.458 4.458 14 H 0.110 0.890 15 C -0.202 4.202 16 N -0.358 5.358 17 Si 0.820 3.180 18 H -0.182 1.182 19 H -0.183 1.183 20 H -0.181 1.181 21 N -0.254 5.254 22 C -0.007 4.007 23 C -0.150 4.150 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.179 0.821 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.054 12.385 -0.567 14.265 hybrid contribution 0.286 -0.028 0.048 0.291 sum -6.768 12.357 -0.519 14.099 Atomic orbital electron populations 1.20848 0.88511 1.03888 1.03415 1.20227 0.97864 0.92071 0.96965 1.21172 0.91919 0.98789 1.02388 1.19982 0.94497 0.94025 0.98800 1.20892 1.00181 0.92554 1.03439 1.21145 0.83776 0.94558 1.10015 1.98325 1.11366 1.98624 1.97023 1.18493 0.93166 0.90101 0.97414 1.19818 1.07254 0.97929 1.07264 1.22947 0.88679 0.92808 0.93938 1.68652 1.32878 1.04009 1.28401 1.20333 0.89236 0.92806 0.85395 1.19731 1.15082 0.96502 1.14476 0.89018 1.27132 0.95751 1.04097 0.93191 1.70167 1.21202 1.33985 1.10450 0.84977 0.78742 0.74678 0.79610 1.18222 1.18329 1.18068 1.69309 1.09664 1.21348 1.25072 1.23385 0.95146 0.88239 0.93896 1.21203 0.91709 0.98909 1.03198 0.89924 0.89367 0.91388 0.82147 0.90096 0.91748 0.88738 0.83809 0.90119 0.83491 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.08 16 2 C -0.07 -1.70 5.87 -19.90 -0.12 -1.82 16 3 C -0.12 -2.72 9.35 22.34 0.21 -2.52 16 4 C -0.07 -1.87 5.88 -19.88 -0.12 -1.99 16 5 C -0.11 -2.22 9.61 71.24 0.68 -1.54 16 6 C -0.07 -2.28 6.30 22.61 0.14 -2.14 16 7 Cl -0.08 -2.86 24.42 -2.72 -0.07 -2.93 16 8 C 0.01 0.39 5.52 -20.00 -0.11 0.28 16 9 C -0.31 -14.20 5.14 -19.64 -0.10 -14.30 16 10 C 0.19 9.19 9.51 85.27 0.81 10.00 16 11 N -0.62 -34.60 10.34 -193.17 -2.00 -36.60 16 12 C 0.36 21.01 7.35 134.90 0.99 22.01 16 13 C -0.42 -23.97 9.35 23.43 0.22 -23.75 16 14 H 0.09 4.99 7.85 -2.91 -0.02 4.97 16 15 C 0.02 1.17 5.50 85.33 0.47 1.64 16 16 N -0.74 -38.98 11.40 21.85 0.25 -38.73 16 17 Si 1.00 37.56 29.56 68.60 2.03 39.58 16 18 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 19 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 20 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 21 N -0.54 -30.65 7.83 -193.16 -1.51 -32.16 16 22 C 0.17 8.28 10.85 85.27 0.93 9.21 16 23 C -0.13 -4.12 9.20 22.53 0.21 -3.91 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 26 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 27 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.37 6.91 -2.39 -0.02 1.35 16 30 H 0.09 1.31 8.08 -2.39 -0.02 1.29 16 31 H 0.14 6.32 7.26 -2.91 -0.02 6.30 16 32 H 0.29 13.50 8.29 -92.71 -0.77 12.73 16 33 H 0.15 6.42 8.06 -2.91 -0.02 6.39 16 34 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -67.27 309.32 4.75 -62.52 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.12 Total: 18.22 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.93 Total: -9.91 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -3.26 Total: -107.49 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -0.07 Total: -2.93 kcal Total: -67.27 4.75 -62.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236548753.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.607 kcal (2) G-P(sol) polarization free energy of solvation -67.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds