Wall clock time and date at job start Tue Mar 31 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99783 * 2 1 4 4 C 1.38572 * 120.02003 * 0.25563 * 3 2 1 5 5 C 1.39524 * 119.80083 * 180.25159 * 4 3 2 6 6 C 1.47951 * 120.08485 * 179.76933 * 5 4 3 7 7 C 1.39959 * 119.88435 * 179.72239 * 6 5 4 8 8 C 1.36237 * 120.12149 * 180.02562 * 7 6 5 9 9 C 1.40939 * 119.87734 * 359.97438 * 8 7 6 10 10 C 1.41003 * 120.11448 * 180.02562 * 9 8 7 11 11 H 1.08009 * 119.99980 * 150.18166 * 10 9 8 12 12 C 1.39989 * 120.00216 * 329.90581 * 10 9 8 13 13 N 1.30809 * 120.00062 * 161.79147 * 12 10 9 14 14 Si 1.86798 * 119.99807 * 341.79427 * 12 10 9 15 15 H 1.48505 * 109.47022 * 95.40895 * 14 12 10 16 16 H 1.48499 * 109.47107 * 215.40319 * 14 12 10 17 17 H 1.48499 * 109.47072 * 335.40550 * 14 12 10 18 18 C 1.40938 * 119.76788 * 0.27320 * 9 8 7 19 19 C 1.36235 * 119.87837 * 359.46406 * 18 9 8 20 20 C 1.39683 * 119.83183 * 359.49678 * 5 4 3 21 21 C 1.37972 * 120.02418 * 0.25157 * 20 5 4 22 22 C 1.38446 * 120.20058 * 359.97438 * 21 20 5 23 23 F 1.35107 * 119.91063 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47447 * 59.99569 * 1 2 3 25 25 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47083 * 300.00389 * 1 2 3 27 27 H 1.07997 * 120.09398 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.94183 * 0.02562 * 7 6 5 29 29 H 1.07999 * 120.06254 * 179.97438 * 8 7 6 30 30 H 0.96999 * 119.99927 * 180.02562 * 13 12 10 31 31 H 1.07999 * 120.06033 * 179.70419 * 18 9 8 32 32 H 1.08007 * 119.93767 * 180.27433 * 19 18 9 33 33 H 1.08000 * 119.99403 * 180.27395 * 20 5 4 34 34 H 1.08006 * 119.89596 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1972 2.6623 0.0054 5 6 1.5161 4.0205 0.0000 6 6 0.4394 5.0352 0.0005 7 6 0.7642 6.3966 0.0010 8 6 -0.2234 7.3351 0.0020 9 6 -1.5742 6.9328 0.0020 10 6 -2.6004 7.8998 0.0025 11 1 -3.5500 7.6798 -0.4626 12 6 -2.3904 9.1430 0.6109 13 7 -3.1681 10.1536 0.3193 14 14 -0.9995 9.3587 1.8390 15 1 0.1941 9.9045 1.1442 16 1 -1.4236 10.2993 2.9070 17 1 -0.6633 8.0440 2.4420 18 6 -1.8957 5.5606 0.0068 19 6 -0.9003 4.6303 0.0003 20 6 2.8546 4.4200 -0.0001 21 6 3.8578 3.4727 -0.0001 22 6 3.5426 2.1246 0.0005 23 9 4.5296 1.2020 -0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.1638 2.3485 0.0099 28 1 1.7996 6.7038 0.0006 29 1 0.0282 8.3853 0.0028 30 1 -3.0223 11.0151 0.7405 31 1 -2.9291 5.2470 0.0116 32 1 -1.1456 3.5785 -0.0005 33 1 3.1045 5.4707 0.0003 34 1 4.8920 3.7839 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238960878.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:59 Heat of formation + Delta-G solvation = -9.765279 kcal Electronic energy + Delta-G solvation = -19134.061890 eV Core-core repulsion = 16036.679336 eV Total energy + Delta-G solvation = -3097.382554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.63578 -39.11988 -37.47795 -34.01979 -31.83524 -31.54619 -30.00484 -29.08901 -28.76595 -25.14329 -23.38729 -22.38577 -21.04723 -20.35607 -17.96432 -17.69102 -16.81169 -16.11921 -15.93851 -15.43363 -15.00325 -14.38029 -14.17214 -13.99564 -13.77977 -13.65416 -13.10244 -12.99021 -12.77947 -12.68179 -12.60078 -12.37320 -11.96884 -11.52547 -11.17306 -11.03203 -10.82801 -10.50337 -10.29136 -10.06927 -9.80924 -9.67098 -9.35868 -8.82786 -8.03058 -7.55744 -7.25076 -7.20258 -4.69656 1.10153 1.32601 1.47801 2.35028 2.45901 2.58692 2.95052 3.07336 3.15683 3.76500 3.80662 4.40561 4.42714 4.87994 4.96349 4.98834 5.21146 5.23543 5.36870 5.41468 5.58762 5.68971 5.81487 5.96718 6.14333 6.20883 6.35898 6.38910 6.48625 6.62143 6.80789 6.90528 7.01989 7.23727 7.43724 7.60228 7.65374 7.86475 8.06473 8.39600 8.50650 9.75057 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.003975 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.505166 B = 7042.328084 C = 7830.257794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.115 6.115 3 C -0.106 4.106 4 C -0.135 4.135 5 C 0.034 3.966 6 C -0.212 4.212 7 C -0.045 4.045 8 C -0.242 4.242 9 C 0.099 3.901 10 C -0.425 4.425 11 H 0.095 0.905 12 C 0.081 3.919 13 N -0.789 5.789 14 Si 0.915 3.085 15 H -0.267 1.267 16 H -0.287 1.287 17 H -0.241 1.241 18 C -0.212 4.212 19 C -0.054 4.054 20 C -0.123 4.123 21 C -0.121 4.121 22 C 0.068 3.932 23 F -0.141 7.141 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.291 0.709 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -10.851 0.797 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.126 5.874 3 C -0.219 4.219 4 C -0.158 4.158 5 C 0.032 3.968 6 C -0.213 4.213 7 C -0.063 4.063 8 C -0.261 4.261 9 C 0.095 3.905 10 C -0.451 4.451 11 H 0.113 0.887 12 C -0.141 4.141 13 N -0.411 5.411 14 Si 0.741 3.259 15 H -0.192 1.192 16 H -0.215 1.215 17 H -0.164 1.164 18 C -0.231 4.231 19 C -0.073 4.073 20 C -0.143 4.143 21 C -0.141 4.141 22 C 0.044 3.956 23 F -0.120 7.120 24 H 0.105 0.895 25 H 0.125 0.875 26 H 0.105 0.895 27 H 0.149 0.851 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.150 0.850 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.815 -11.669 0.800 14.067 hybrid contribution -0.214 1.322 0.451 1.413 sum 7.601 -10.346 1.250 12.899 Atomic orbital electron populations 1.23697 0.94711 1.06915 1.06110 1.85412 1.06384 1.02661 1.92904 1.21586 0.94884 0.97440 1.07999 1.21069 0.97783 0.92063 1.04886 1.18886 0.92969 0.91994 0.92922 1.17948 0.91336 0.91473 1.20586 1.20453 0.97551 0.92206 0.96137 1.20732 0.93304 0.97850 1.14218 1.17826 0.92110 0.92615 0.87933 1.19675 1.00939 0.95419 1.29082 0.88674 1.26331 0.96823 0.94378 0.96551 1.69677 1.35329 1.01777 1.34278 0.86227 0.79900 0.80191 0.79587 1.19248 1.21467 1.16418 1.20711 0.97577 0.92772 1.12078 1.20444 0.92225 0.97428 0.97158 1.21124 0.91508 0.99467 1.02235 1.20879 1.00473 0.90445 1.02349 1.16992 0.83002 0.86342 1.09306 1.91452 1.60486 1.65623 1.94405 0.89509 0.87465 0.89522 0.85059 0.88252 0.87908 0.89857 0.87863 0.88678 0.84956 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.15 101.05 0.92 -0.52 16 2 S -0.11 -1.53 22.16 -107.50 -2.38 -3.91 16 3 C -0.11 -1.65 6.11 -39.05 -0.24 -1.89 16 4 C -0.13 -2.14 8.74 -38.98 -0.34 -2.48 16 5 C 0.03 0.60 5.88 -104.90 -0.62 -0.02 16 6 C -0.21 -4.15 5.90 -104.63 -0.62 -4.76 16 7 C -0.05 -0.91 9.36 -39.66 -0.37 -1.28 16 8 C -0.24 -5.41 7.11 -39.28 -0.28 -5.69 16 9 C 0.10 2.32 5.10 -106.80 -0.54 1.78 16 10 C -0.42 -10.61 9.55 -37.88 -0.36 -10.97 16 11 H 0.10 2.47 8.06 -52.48 -0.42 2.05 16 12 C 0.08 1.96 5.40 -17.33 -0.09 1.87 16 13 N -0.79 -19.45 13.93 55.55 0.77 -18.68 16 14 Si 0.92 19.32 24.52 -169.99 -4.17 15.15 16 15 H -0.27 -5.44 6.71 56.52 0.38 -5.06 16 16 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.24 -5.26 6.87 56.52 0.39 -4.87 16 18 C -0.21 -4.56 9.73 -39.28 -0.38 -4.94 16 19 C -0.05 -1.06 9.36 -39.66 -0.37 -1.43 16 20 C -0.12 -1.91 9.42 -39.14 -0.37 -2.28 16 21 C -0.12 -1.75 10.00 -39.60 -0.40 -2.14 16 22 C 0.07 1.07 7.28 -39.10 -0.28 0.79 16 23 F -0.14 -2.22 16.75 2.25 0.04 -2.19 16 24 H 0.09 0.84 7.76 -51.92 -0.40 0.44 16 25 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.09 0.84 7.73 -51.92 -0.40 0.44 16 27 H 0.13 1.90 3.99 -52.49 -0.21 1.69 16 28 H 0.10 1.73 6.17 -52.48 -0.32 1.40 16 29 H 0.10 2.28 4.75 -52.49 -0.25 2.03 16 30 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 31 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.10 1.58 6.17 -52.48 -0.32 1.26 16 33 H 0.13 1.85 6.17 -52.49 -0.32 1.52 16 34 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -25.70 299.45 -8.66 -34.37 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.10 Total: 4.73 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -4.34 Total: -33.98 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.77 Total: -18.68 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.17 Total: 15.15 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.38 Total: -3.91 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.70 -8.66 -34.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238960878.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.600 kcal (2) G-P(sol) polarization free energy of solvation -25.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds